Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00404 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99825 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47100 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47054 * 119.99878 * 8 6 4 11 11 H 1.48500 * 109.47134 * 240.00287 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47256 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47097 * 305.00145 * 19 18 17 21 21 O 1.42898 * 109.46579 * 65.00317 * 19 18 17 22 22 C 1.50700 * 109.47185 * 185.00010 * 19 18 17 23 23 C 1.38275 * 119.98388 * 29.72699 * 22 19 18 24 24 C 1.38225 * 120.04755 * 179.72326 * 23 22 19 25 25 C 1.38228 * 120.02319 * 0.55170 * 24 23 22 26 26 C 1.38431 * 119.97328 * 359.72271 * 25 24 23 27 27 F 1.35102 * 120.02478 * 180.02562 * 26 25 24 28 28 C 1.38163 * 119.98845 * 210.00178 * 22 19 18 29 29 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 30 30 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 31 31 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 32 32 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 33 33 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 34 34 H 0.96997 * 120.00581 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 36 36 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 37 37 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 38 38 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 39 39 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 40 40 H 1.00896 * 111.00229 * 56.04575 * 17 16 13 41 41 H 1.08998 * 109.47006 * 300.00352 * 18 17 16 42 42 H 1.09003 * 109.46947 * 60.00060 * 18 17 16 43 43 H 1.09002 * 109.46829 * 59.99856 * 20 19 18 44 44 H 1.08999 * 109.46605 * 179.97438 * 20 19 18 45 45 H 1.09002 * 109.47251 * 299.99691 * 20 19 18 46 46 H 0.96691 * 114.00469 * 60.00133 * 21 19 18 47 47 H 1.07998 * 119.97604 * 359.97438 * 23 22 19 48 48 H 1.07993 * 119.98919 * 180.27529 * 24 23 22 49 49 H 1.07992 * 120.00822 * 179.70358 * 25 24 23 50 50 H 1.08000 * 120.01697 * 0.02622 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5829 4.1867 3.1383 9 1 0.8138 3.2448 3.9906 10 1 2.8244 4.5931 3.8445 11 1 0.7563 5.3883 2.8589 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 6 1.7496 -6.6765 -3.0435 20 6 2.1551 -7.2242 -1.6736 21 8 0.3265 -6.7116 -3.1684 22 6 2.3699 -7.5217 -4.1261 23 6 3.6164 -7.1960 -4.6282 24 6 4.1890 -7.9736 -5.6171 25 6 3.5110 -9.0713 -6.1133 26 6 2.2606 -9.3949 -5.6153 27 9 1.5972 -10.4678 -6.0992 28 6 1.6903 -8.6184 -4.6205 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8526 31 1 -0.3634 0.4513 -0.9232 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9274 -0.8308 34 1 2.9883 4.9172 0.7779 35 1 3.0796 -0.6611 -1.1758 36 1 1.5609 -0.3872 -2.0628 37 1 3.1652 -2.6772 0.2784 38 1 1.8158 -2.6057 -3.0860 39 1 3.2695 -3.0086 -2.1411 40 1 0.7234 -4.4873 -2.0029 41 1 1.8739 -4.8134 -4.1183 42 1 3.3280 -5.2165 -3.1741 43 1 1.7065 -6.6128 -0.8906 44 1 1.8067 -8.2524 -1.5759 45 1 3.2406 -7.1974 -1.5784 46 1 -0.0024 -6.3782 -4.0143 47 1 4.1447 -6.3358 -4.2445 48 1 5.1645 -7.7210 -6.0054 49 1 3.9565 -9.6758 -6.8893 50 1 0.7146 -8.8698 -4.2317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647562558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -138.585555 kcal Electronic energy + Delta-G solvation = -29136.263285 eV Core-core repulsion = 24883.831201 eV Total energy + Delta-G solvation = -4252.432084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.93612 -40.97847 -39.51266 -38.38930 -37.16260 -35.61587 -34.60143 -33.36711 -31.77921 -31.09948 -30.15162 -29.04307 -27.82216 -26.45797 -24.97481 -23.94233 -23.38640 -22.66891 -21.78495 -21.20919 -18.93859 -18.55285 -17.99229 -17.35569 -17.20314 -17.02996 -16.83734 -16.71949 -16.64679 -16.22411 -15.97286 -15.74176 -15.47038 -15.35486 -14.87560 -14.71245 -14.59663 -14.16701 -13.85093 -13.83648 -13.67220 -13.22594 -13.18360 -13.15708 -12.98511 -12.79949 -12.74173 -12.63008 -12.56726 -12.52512 -12.37214 -12.32721 -11.98863 -11.70439 -11.59145 -11.36827 -11.10713 -10.62195 -10.57447 -9.98516 -9.70325 -9.29035 -8.94187 -8.20715 -6.30261 0.10963 0.20238 1.41026 1.41886 1.55786 2.40573 2.55484 2.80330 3.11656 3.19212 3.32439 3.43350 3.68298 3.74393 3.81061 3.95160 3.99238 4.07574 4.11555 4.18344 4.22409 4.35427 4.41941 4.46502 4.55639 4.65670 4.70686 4.73438 4.76552 4.79546 4.81385 4.95831 5.05098 5.07745 5.09033 5.14339 5.16925 5.19736 5.32387 5.33048 5.41978 5.45506 5.65555 5.89087 6.01204 6.07034 6.33261 6.42021 6.65693 6.75626 6.86347 7.09637 7.39547 8.90351 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033414 B = 0.001623 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.767133 B =17243.384116 C =17562.414229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.023 3.977 13 C 0.130 3.870 14 H 0.087 0.913 15 O -0.553 6.553 16 C 0.039 3.961 17 N -0.676 5.676 18 C 0.039 3.961 19 C 0.183 3.817 20 C -0.124 4.124 21 O -0.563 6.563 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.087 4.087 25 C -0.157 4.157 26 C 0.075 3.925 27 F -0.152 7.152 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.010 0.990 32 H 0.005 0.995 33 H -0.039 1.039 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.378 0.622 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.345 0.655 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.386 0.614 47 H 0.150 0.850 48 H 0.161 0.839 49 H 0.150 0.850 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -26.730 -15.576 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.106 4.106 13 C 0.070 3.930 14 H 0.105 0.895 15 O -0.358 6.358 16 C -0.091 4.091 17 N -0.308 5.308 18 C -0.090 4.090 19 C 0.142 3.858 20 C -0.181 4.181 21 O -0.370 6.370 22 C -0.090 4.090 23 C -0.142 4.142 24 C -0.105 4.105 25 C -0.175 4.175 26 C 0.056 3.944 27 F -0.131 7.131 28 C -0.165 4.165 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.024 0.976 33 H -0.022 1.022 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.226 0.774 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.236 0.764 47 H 0.167 0.833 48 H 0.179 0.821 49 H 0.168 0.832 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.107 -27.387 -14.029 30.843 hybrid contribution -0.613 1.630 -1.764 2.478 sum 1.494 -25.757 -15.793 30.250 Atomic orbital electron populations 1.22211 0.87976 1.01001 0.99531 1.61920 1.07860 1.14800 1.41707 1.19405 0.93718 0.83986 0.94837 1.21510 1.34667 0.97492 1.02425 0.92157 1.25901 0.95045 0.98051 1.00683 1.70078 1.39424 1.11887 1.36116 0.85336 0.78101 0.78141 0.79046 1.18947 1.20295 1.20371 1.22852 1.00376 0.95480 0.91866 1.21706 0.97988 0.88769 0.84555 0.89515 1.86561 1.25933 1.84864 1.38477 1.22532 1.01439 0.88366 0.96717 1.60279 1.17118 1.09454 1.43939 1.22696 1.01775 0.92397 0.92167 1.19962 0.80297 0.92067 0.93523 1.21600 1.01839 1.00321 0.94376 1.86591 1.20235 1.87603 1.42554 1.20378 0.95683 0.95754 0.97173 1.21497 0.94768 1.00835 0.97050 1.21376 1.00692 0.92970 0.95445 1.21473 0.93530 1.00066 1.02449 1.17973 0.92801 0.86435 0.97230 1.91477 1.80735 1.53711 1.87152 1.20993 1.01971 0.96012 0.97476 0.90627 0.92805 0.97113 0.97643 1.02176 0.92688 0.91216 0.95136 0.77423 0.93893 0.89752 0.83647 0.94084 0.88801 0.91105 0.93192 0.90465 0.76438 0.83276 0.82114 0.83241 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.78 16 2 N -0.54 -23.22 4.62 -927.04 -4.28 -27.50 16 3 C 0.21 11.07 4.72 85.56 0.40 11.47 16 4 C -0.52 -30.04 8.46 25.60 0.22 -29.83 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.06 5.46 84.66 0.46 0.52 16 7 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 8 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.02 0.77 4.62 86.30 0.40 1.17 16 13 C 0.13 3.37 3.02 30.60 0.09 3.47 16 14 H 0.09 2.34 6.55 -2.39 -0.02 2.32 16 15 O -0.55 -16.31 13.15 -148.98 -1.96 -18.27 16 16 C 0.04 0.74 5.32 86.30 0.46 1.19 16 17 N -0.68 -11.54 5.47 -513.88 -2.81 -14.35 16 18 C 0.04 0.50 4.32 86.30 0.37 0.87 16 19 C 0.18 2.49 1.00 -11.54 -0.01 2.48 16 20 C -0.12 -2.02 8.61 71.98 0.62 -1.40 16 21 O -0.56 -8.31 11.48 -148.98 -1.71 -10.02 16 22 C -0.09 -1.15 4.81 -19.87 -0.10 -1.25 16 23 C -0.12 -1.25 9.14 22.28 0.20 -1.05 16 24 C -0.09 -0.77 10.04 22.26 0.22 -0.55 16 25 C -0.16 -1.82 10.03 22.31 0.22 -1.59 16 26 C 0.07 1.18 7.30 22.37 0.16 1.34 16 27 F -0.15 -2.83 17.27 44.97 0.78 -2.05 16 28 C -0.15 -2.22 9.33 22.31 0.21 -2.01 16 29 H 0.08 2.52 6.47 -2.39 -0.02 2.50 16 30 H 0.05 2.31 6.76 -2.38 -0.02 2.30 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 33 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.07 2.28 7.93 -2.39 -0.02 2.26 16 36 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.38 9.24 9.04 -74.06 -0.67 8.58 16 38 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.34 6.28 8.29 -89.70 -0.74 5.54 16 41 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 1.03 6.21 -2.39 -0.01 1.02 16 43 H 0.07 1.39 7.47 -2.39 -0.02 1.38 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.39 3.45 9.04 -74.06 -0.67 2.78 16 47 H 0.15 1.02 6.04 -2.91 -0.02 1.00 16 48 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 49 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 50 H 0.14 2.13 7.48 -2.91 -0.02 2.11 16 Total: -1.00 -69.86 407.33 -3.68 -73.54 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.11 Total: 20.28 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.11 Total: -12.38 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -6.81 Total: -97.81 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -3.67 Total: -28.29 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.86 -3.68 -73.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647562558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.048 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds