Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47070 * 2 1 4 4 S 1.81401 * 109.46884 * 119.99534 * 2 1 3 5 5 C 1.81397 * 102.99935 * 175.00322 * 4 2 1 6 6 C 1.50703 * 109.47617 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00496 * 179.97438 * 6 5 4 9 9 C 1.46927 * 120.62682 * 355.03398 * 8 6 5 10 10 C 1.53195 * 108.77012 * 126.37173 * 9 8 6 11 11 C 1.53040 * 109.34045 * 54.61653 * 10 9 8 12 12 C 1.53035 * 109.54047 * 298.68107 * 11 10 9 13 13 C 1.46925 * 120.62945 * 175.01181 * 8 6 5 14 14 H 1.09001 * 109.58418 * 113.84148 * 13 8 6 15 15 C 1.52999 * 109.58573 * 353.56199 * 13 8 6 16 16 H 1.08996 * 109.87407 * 320.13668 * 15 13 8 17 17 C 1.54326 * 109.88402 * 81.31879 * 15 13 8 18 18 C 1.55151 * 102.94273 * 141.60632 * 17 15 13 19 19 C 1.54906 * 101.58408 * 324.49690 * 18 17 15 20 20 N 1.47030 * 109.87895 * 199.12193 * 15 13 8 21 21 C 1.36933 * 125.64641 * 61.68071 * 20 15 13 22 22 H 1.08002 * 120.00367 * 18.67371 * 21 20 15 23 23 C 1.38816 * 119.99958 * 198.68122 * 21 20 15 24 24 N 1.31624 * 119.99938 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00079 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47081 * 59.99726 * 25 23 21 27 27 H 1.48501 * 109.46799 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47153 * 299.99239 * 25 23 21 29 29 H 1.09004 * 109.47495 * 300.00433 * 1 2 3 30 30 H 1.08996 * 109.47132 * 60.00531 * 1 2 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47256 * 239.99561 * 2 1 3 33 33 H 1.08997 * 109.47696 * 59.99363 * 3 2 1 34 34 H 1.09004 * 109.47416 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47133 * 299.99737 * 3 2 1 36 36 H 1.09000 * 109.47636 * 59.99922 * 5 4 2 37 37 H 1.08997 * 109.47196 * 299.99998 * 5 4 2 38 38 H 1.09001 * 109.58948 * 6.58324 * 9 8 6 39 39 H 1.09002 * 109.58625 * 246.15190 * 9 8 6 40 40 H 1.09004 * 109.49237 * 174.58768 * 10 9 8 41 41 H 1.09003 * 109.49980 * 294.64449 * 10 9 8 42 42 H 1.08998 * 109.46049 * 58.67040 * 11 10 9 43 43 H 1.09001 * 109.45685 * 178.62714 * 11 10 9 44 44 H 1.08998 * 109.47050 * 301.36690 * 12 11 10 45 45 H 1.08996 * 109.52799 * 181.30272 * 12 11 10 46 46 H 1.09004 * 110.71638 * 259.97145 * 17 15 13 47 47 H 1.08990 * 110.71856 * 23.24218 * 17 15 13 48 48 H 1.09000 * 111.00513 * 206.41588 * 18 17 15 49 49 H 1.09011 * 111.00406 * 82.57244 * 18 17 15 50 50 H 1.09000 * 110.36368 * 278.17267 * 19 18 17 51 51 H 1.09006 * 110.36938 * 155.85215 * 19 18 17 52 52 H 0.96998 * 120.00015 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8550 1.4812 5 6 3.9307 -0.8873 1.2292 6 6 4.5893 -1.5783 2.3953 7 8 3.9136 -2.0063 3.3069 8 7 5.9292 -1.7205 2.4252 9 6 6.7517 -1.3054 1.2807 10 6 7.8395 -0.3476 1.7769 11 6 8.6261 -1.0158 2.9069 12 6 7.6846 -1.3243 4.0732 13 6 6.5951 -2.2931 3.6030 14 1 7.0460 -3.2497 3.3388 15 6 5.5713 -2.5001 4.7210 16 1 4.8805 -1.6575 4.7514 17 6 4.7940 -3.8122 4.4846 18 6 4.6326 -4.3835 5.9180 19 6 5.9705 -3.9602 6.5741 20 7 6.2610 -2.6282 6.0132 21 6 7.0430 -1.6688 6.5989 22 1 6.9622 -0.6392 6.2829 23 6 7.9398 -2.0195 7.5987 24 7 8.0381 -3.2742 7.9841 25 14 9.0071 -0.7109 8.3973 26 1 8.1410 0.3129 9.0352 27 1 9.8720 -1.3389 9.4282 28 1 9.8565 -0.0663 7.3637 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 4.3053 0.1334 1.1525 37 1 4.1590 -1.4281 0.3108 38 1 6.1262 -0.7987 0.5457 39 1 7.2155 -2.1814 0.8271 40 1 8.5149 -0.1075 0.9558 41 1 7.3772 0.5675 2.1471 42 1 9.0682 -1.9431 2.5426 43 1 9.4163 -0.3453 3.2450 44 1 7.2238 -0.4003 4.4223 45 1 8.2494 -1.7791 4.8869 46 1 3.8204 -3.6086 4.0387 47 1 5.3703 -4.4946 3.8601 48 1 4.5338 -5.4689 5.8972 49 1 3.7851 -3.9255 6.4281 50 1 6.7610 -4.6631 6.3113 51 1 5.8598 -3.8999 7.6569 52 1 8.6645 -3.5193 8.6830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661978619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 15.032565 kcal Electronic energy + Delta-G solvation = -29855.376616 eV Core-core repulsion = 26175.819090 eV Total energy + Delta-G solvation = -3679.557527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.39726 -37.26192 -36.70739 -34.98844 -32.74533 -32.47098 -31.53054 -29.77490 -28.78430 -27.46939 -26.90976 -24.57435 -24.40673 -22.44654 -22.11700 -20.87370 -19.79233 -19.32004 -18.84392 -17.20845 -16.57376 -16.09332 -15.71145 -15.58148 -14.99657 -14.69135 -14.38999 -14.33177 -13.92987 -13.89769 -13.76024 -13.61707 -13.11718 -12.94515 -12.60910 -12.51908 -12.45515 -12.15869 -11.85632 -11.73263 -11.60158 -11.54522 -11.36454 -11.32700 -10.95468 -10.86406 -10.79387 -10.65130 -10.52190 -10.11232 -10.03096 -9.91816 -9.76456 -9.61837 -9.37819 -9.21581 -8.69533 -8.32490 -8.09351 -7.66431 -6.53795 -5.67854 -3.01023 1.42139 2.46267 2.84896 3.29913 3.41567 3.47347 3.47412 4.49968 4.53872 4.55739 4.61220 4.86687 4.91242 4.97296 5.06581 5.09867 5.22198 5.28493 5.39438 5.44258 5.46296 5.52496 5.54239 5.62091 5.66797 5.78073 5.85366 5.86453 5.86925 5.97384 6.05600 6.17811 6.18764 6.26401 6.33733 6.40126 6.60483 6.69654 6.71720 6.85975 6.99749 7.05654 7.20918 7.43958 7.60428 7.66401 7.72286 7.80463 7.90015 8.37241 8.59365 9.29195 9.90993 10.65225 11.44211 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.003603 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.768854 B = 7768.857170 C = 8562.025321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.177 6.177 5 C -0.126 4.126 6 C 0.514 3.486 7 O -0.490 6.490 8 N -0.601 5.601 9 C 0.108 3.892 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.122 4.122 13 C 0.140 3.860 14 H 0.057 0.943 15 C 0.166 3.834 16 H 0.068 0.932 17 C -0.114 4.114 18 C -0.151 4.151 19 C 0.176 3.824 20 N -0.597 5.597 21 C -0.218 4.218 22 H 0.073 0.927 23 C -0.005 4.005 24 N -0.913 5.913 25 Si 0.900 3.100 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.024 0.976 51 H 0.058 0.942 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 5.854 -19.672 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.049 5.951 5 C -0.277 4.277 6 C 0.301 3.699 7 O -0.366 6.366 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.172 4.172 11 C -0.163 4.163 12 C -0.160 4.160 13 C 0.037 3.963 14 H 0.075 0.925 15 C 0.059 3.941 16 H 0.085 0.915 17 C -0.151 4.151 18 C -0.190 4.190 19 C 0.051 3.949 20 N -0.322 5.322 21 C -0.347 4.347 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.559 5.559 25 Si 0.730 3.270 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.076 0.924 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.149 5.199 -18.127 20.543 hybrid contribution 1.760 1.206 -0.877 2.307 sum -6.389 6.405 -19.004 21.047 Atomic orbital electron populations 1.21553 0.91747 1.02989 1.02617 1.23233 1.00047 0.98838 0.99207 1.22098 1.00991 0.94721 1.02860 1.87571 1.01883 1.76282 1.29351 1.23644 0.97070 1.04781 1.02241 1.19573 0.82565 0.80542 0.87261 1.90778 1.63376 1.46598 1.35849 1.48277 1.04956 1.62464 1.17892 1.21693 0.93395 0.98243 0.88249 1.21920 0.97475 0.98707 0.99057 1.21657 0.98451 0.99940 0.96202 1.22331 0.96428 0.99691 0.97553 1.22278 0.95057 0.94923 0.84086 0.92461 1.21554 0.90736 0.97653 0.84139 0.91487 1.22845 1.00861 0.95349 0.96071 1.23017 1.00393 0.98350 0.97226 1.21314 0.90119 0.86226 0.97270 1.44730 1.57054 1.14275 1.16106 1.18902 1.12210 0.88286 1.15297 0.90938 1.24939 0.98917 0.95943 1.00420 1.69943 1.38791 1.15232 1.31971 0.86381 0.80597 0.80950 0.79036 1.21199 1.21715 1.21051 0.91591 0.91367 0.91622 0.89856 0.91208 0.92714 0.92022 0.87917 0.88166 0.90823 0.91595 0.91631 0.91789 0.92569 0.92245 0.92270 0.86462 0.89250 0.94038 0.93154 0.92663 0.95790 0.92363 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.20 37.16 0.34 -0.65 16 2 C -0.08 -0.73 3.38 -26.73 -0.09 -0.82 16 3 C -0.15 -1.12 9.10 37.16 0.34 -0.78 16 4 S -0.18 -2.24 20.29 -107.50 -2.18 -4.42 16 5 C -0.13 -1.46 4.47 36.01 0.16 -1.30 16 6 C 0.51 8.11 7.43 -10.98 -0.08 8.03 16 7 O -0.49 -9.45 8.72 5.55 0.05 -9.40 16 8 N -0.60 -9.21 2.97 -165.22 -0.49 -9.70 16 9 C 0.11 1.22 6.35 -3.71 -0.02 1.20 16 10 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 11 C -0.12 -1.86 5.89 -26.69 -0.16 -2.01 16 12 C -0.12 -2.35 3.77 -26.62 -0.10 -2.45 16 13 C 0.14 2.67 2.76 -67.60 -0.19 2.48 16 14 H 0.06 1.15 7.64 -51.93 -0.40 0.75 16 15 C 0.17 3.67 2.37 -66.95 -0.16 3.51 16 16 H 0.07 1.64 5.78 -52.04 -0.30 1.34 16 17 C -0.11 -2.36 5.56 -24.90 -0.14 -2.50 16 18 C -0.15 -3.25 7.08 -24.59 -0.17 -3.42 16 19 C 0.18 4.46 5.36 -2.53 -0.01 4.45 16 20 N -0.60 -15.28 3.03 -162.57 -0.49 -15.77 16 21 C -0.22 -5.87 6.61 -15.06 -0.10 -5.97 16 22 H 0.07 1.92 6.33 -52.49 -0.33 1.59 16 23 C -0.01 -0.14 5.46 -17.43 -0.10 -0.23 16 24 N -0.91 -26.58 10.75 55.49 0.60 -25.99 16 25 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.41 6.92 -51.93 -0.36 0.05 16 35 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.10 1.03 6.90 -51.92 -0.36 0.67 16 37 H 0.10 0.94 7.74 -51.93 -0.40 0.54 16 38 H 0.07 0.63 5.93 -51.93 -0.31 0.33 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.22 6.90 -51.93 -0.36 0.86 16 45 H 0.12 2.73 5.81 -51.93 -0.30 2.43 16 46 H 0.09 1.87 5.58 -52.20 -0.29 1.58 16 47 H 0.04 0.83 7.54 -51.93 -0.39 0.44 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 50 H 0.02 0.65 7.97 -51.93 -0.41 0.24 16 51 H 0.06 1.63 7.23 -51.93 -0.38 1.25 16 52 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -30.45 389.92 -11.53 -41.98 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.22 Total: 2.87 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.64 Total: -2.19 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.39 Total: -51.46 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.05 Total: -9.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.18 Total: -4.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.45 -11.53 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.013 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds