Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47115 * 2 1 4 4 S 1.81398 * 109.47032 * 119.99672 * 2 1 3 5 5 C 1.81400 * 102.99845 * 65.00105 * 4 2 1 6 6 C 1.50706 * 109.47153 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99655 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99875 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.62821 * 2.39915 * 8 6 5 10 10 C 1.53196 * 108.77297 * 126.39203 * 9 8 6 11 11 C 1.53045 * 109.31290 * 54.63110 * 10 9 8 12 12 C 1.53040 * 109.53824 * 298.63319 * 11 10 9 13 13 C 1.46928 * 120.62707 * 182.39918 * 8 6 5 14 14 H 1.08996 * 109.70521 * 113.75530 * 13 8 6 15 15 C 1.53004 * 109.58780 * 353.39469 * 13 8 6 16 16 H 1.08999 * 109.99633 * 53.30550 * 15 13 8 17 17 C 1.54320 * 109.88078 * 292.21079 * 15 13 8 18 18 C 1.55161 * 102.94087 * 218.38995 * 17 15 13 19 19 C 1.54912 * 101.58041 * 35.50015 * 18 17 15 20 20 N 1.47020 * 109.88045 * 174.39832 * 15 13 8 21 21 C 1.36937 * 125.65283 * 298.62854 * 20 15 13 22 22 H 1.08006 * 119.99532 * 345.25627 * 21 20 15 23 23 C 1.38803 * 120.00353 * 165.26023 * 21 20 15 24 24 N 1.31621 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 89.99874 * 25 23 21 27 27 H 1.48505 * 109.47190 * 209.99927 * 25 23 21 28 28 H 1.48495 * 109.47227 * 329.99914 * 25 23 21 29 29 H 1.08989 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46859 * 300.00261 * 1 2 3 31 31 H 1.08994 * 109.46594 * 60.00083 * 1 2 3 32 32 H 1.09003 * 109.47178 * 239.99905 * 2 1 3 33 33 H 1.08999 * 109.47060 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47003 * 300.00060 * 3 2 1 35 35 H 1.09003 * 109.47175 * 59.99903 * 3 2 1 36 36 H 1.08996 * 109.47292 * 60.00157 * 5 4 2 37 37 H 1.09002 * 109.47007 * 299.99935 * 5 4 2 38 38 H 1.08997 * 109.59363 * 6.60528 * 9 8 6 39 39 H 1.09006 * 109.70133 * 246.24211 * 9 8 6 40 40 H 1.09002 * 109.49550 * 294.67967 * 10 9 8 41 41 H 1.08998 * 109.52588 * 174.59737 * 10 9 8 42 42 H 1.08999 * 109.45802 * 178.61526 * 11 10 9 43 43 H 1.09002 * 109.45767 * 58.65518 * 11 10 9 44 44 H 1.08999 * 109.49860 * 301.41798 * 12 11 10 45 45 H 1.08997 * 109.52568 * 181.32942 * 12 11 10 46 46 H 1.09001 * 110.71971 * 100.02943 * 17 15 13 47 47 H 1.08993 * 110.87574 * 336.82090 * 17 15 13 48 48 H 1.09009 * 111.00453 * 277.43184 * 18 17 15 49 49 H 1.08999 * 111.00911 * 153.57486 * 18 17 15 50 50 H 1.09001 * 110.36662 * 204.15427 * 19 18 17 51 51 H 1.09002 * 110.45587 * 81.87829 * 19 18 17 52 52 H 0.96998 * 120.00201 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 -2.5592 1.2291 6 6 1.9984 -3.4105 2.3952 7 8 2.6272 -2.9161 3.3068 8 7 1.6850 -4.7210 2.4255 9 6 0.9685 -5.3454 1.3050 10 6 1.7631 -6.5663 0.8308 11 6 2.0113 -7.5007 2.0171 12 6 2.8359 -6.7708 3.0798 13 6 2.0534 -5.5522 3.5797 14 1 1.1527 -5.8833 4.0966 15 6 2.9263 -4.7403 4.5388 16 1 2.4277 -3.8058 4.7960 17 6 4.2912 -4.4438 3.8827 18 6 5.2841 -4.5864 5.0665 19 6 4.6407 -5.7409 5.8746 20 7 3.1878 -5.5195 5.7578 21 6 2.2388 -5.9700 6.6361 22 1 1.2364 -5.5694 6.6003 23 6 2.5649 -6.9414 7.5724 24 7 3.7864 -7.4299 7.6157 25 14 1.2704 -7.5555 8.7710 26 1 0.5599 -8.7177 8.1795 27 1 1.9253 -7.9683 10.0383 28 1 0.2970 -6.4688 9.0479 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0002 -2.9547 0.3107 37 1 0.4792 -2.5720 1.1524 38 1 0.8745 -4.6306 0.4875 39 1 -0.0229 -5.6592 1.6320 40 1 2.7180 -6.2409 0.4180 41 1 1.1963 -7.0944 0.0641 42 1 2.5552 -8.3821 1.6775 43 1 1.0563 -7.8060 2.4449 44 1 3.7807 -6.4435 2.6458 45 1 3.0326 -7.4440 3.9142 46 1 4.3138 -3.4310 3.4804 47 1 4.5138 -5.1720 3.1029 48 1 5.3226 -3.6707 5.6567 49 1 6.2771 -4.8633 4.7125 50 1 4.9493 -5.6910 6.9188 51 1 4.9133 -6.7048 5.4448 52 1 4.0144 -8.1085 8.2702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661978620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = 16.136918 kcal Electronic energy + Delta-G solvation = -29788.119852 eV Core-core repulsion = 26108.610213 eV Total energy + Delta-G solvation = -3679.509638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52450 -37.30856 -36.69158 -35.00171 -32.86132 -32.42065 -31.38159 -29.62451 -29.10123 -27.48835 -26.84274 -24.65072 -24.22486 -22.79728 -22.13925 -20.94012 -20.05493 -19.63999 -18.24045 -17.21947 -16.62805 -15.93296 -15.70836 -15.56895 -15.02835 -14.76471 -14.53628 -14.40920 -14.10792 -13.93274 -13.74428 -13.53103 -13.39952 -13.06759 -12.89099 -12.64570 -12.52663 -12.02343 -11.81753 -11.70234 -11.57617 -11.49443 -11.39470 -11.21904 -11.10945 -10.90806 -10.78846 -10.63832 -10.51900 -10.26425 -9.99486 -9.95545 -9.78460 -9.56393 -9.45508 -9.35817 -8.67781 -8.43636 -8.02583 -7.68061 -6.57105 -5.63293 -2.97034 1.40333 2.44544 2.82957 3.26180 3.43586 3.49843 3.51403 4.48427 4.52054 4.58383 4.59833 4.79278 4.88211 4.95778 5.00033 5.06921 5.13036 5.27080 5.37675 5.41643 5.44978 5.48760 5.53176 5.53882 5.55308 5.72938 5.83475 5.84133 5.85461 5.91545 5.99435 6.06901 6.11735 6.18367 6.22734 6.40459 6.48624 6.59839 6.68645 6.81218 6.91115 7.03249 7.12132 7.15328 7.59555 7.68436 7.72957 7.79200 7.94265 8.39023 8.55759 9.33189 9.95718 10.67306 11.48329 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003434 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.569684 B = 8150.878589 C = 8687.481893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.131 4.131 4 S -0.177 6.177 5 C -0.125 4.125 6 C 0.512 3.488 7 O -0.487 6.487 8 N -0.600 5.600 9 C 0.107 3.893 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.125 4.125 13 C 0.138 3.862 14 H 0.072 0.928 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.125 4.125 18 C -0.151 4.151 19 C 0.176 3.824 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.917 5.917 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.065 0.935 51 H 0.020 0.980 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 9.301 -20.488 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.213 4.213 3 C -0.189 4.189 4 S 0.050 5.950 5 C -0.277 4.277 6 C 0.299 3.701 7 O -0.362 6.362 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.170 4.170 11 C -0.158 4.158 12 C -0.163 4.163 13 C 0.034 3.966 14 H 0.090 0.910 15 C 0.058 3.942 16 H 0.093 0.907 17 C -0.162 4.162 18 C -0.189 4.189 19 C 0.051 3.949 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.038 0.962 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.455 9.837 -18.929 21.792 hybrid contribution -1.547 -1.340 -0.631 2.142 sum -6.003 8.497 -19.560 22.154 Atomic orbital electron populations 1.22096 0.93492 1.02208 1.02859 1.23241 0.98840 1.00042 0.99222 1.21556 1.01882 0.92871 1.02611 1.87598 1.74377 1.03756 1.29313 1.23629 1.05016 0.96821 1.02202 1.19510 0.80902 0.82448 0.87285 1.90769 1.37061 1.72428 1.35934 1.48192 1.57220 1.07956 1.20135 1.21695 0.95627 0.95362 0.88985 1.21899 1.00493 0.96328 0.98303 1.21546 1.00731 0.97769 0.95745 1.21981 0.98199 0.97338 0.98804 1.22206 0.98960 0.91076 0.84330 0.90981 1.21688 0.93649 0.93324 0.85581 0.90732 1.23054 0.94993 1.01190 0.96940 1.23010 0.97194 1.00613 0.98129 1.21355 0.82984 0.92139 0.98440 1.44722 1.02596 1.63247 1.21451 1.18955 0.91745 1.14951 1.09384 0.91146 1.24856 0.96710 0.98305 1.00337 1.69954 1.17361 1.31506 1.37614 0.86235 0.80870 0.78753 0.80652 1.21753 1.21810 1.20748 0.92721 0.91217 0.92021 0.89832 0.91599 0.91357 0.91599 0.88086 0.87943 0.90719 0.91473 0.91767 0.91357 0.92254 0.92080 0.91710 0.89336 0.89789 0.92931 0.92682 0.93253 0.91678 0.96184 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.10 37.16 0.34 -0.73 16 2 C -0.08 -0.71 3.38 -26.73 -0.09 -0.80 16 3 C -0.13 -0.98 9.20 37.16 0.34 -0.64 16 4 S -0.18 -2.20 20.29 -107.50 -2.18 -4.38 16 5 C -0.13 -1.41 4.48 36.01 0.16 -1.25 16 6 C 0.51 7.91 7.25 -10.98 -0.08 7.83 16 7 O -0.49 -9.35 8.78 5.56 0.05 -9.30 16 8 N -0.60 -8.94 2.95 -165.21 -0.49 -9.42 16 9 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 10 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 11 C -0.12 -1.64 5.88 -26.69 -0.16 -1.79 16 12 C -0.13 -2.21 4.96 -26.61 -0.13 -2.35 16 13 C 0.14 2.60 2.70 -67.59 -0.18 2.42 16 14 H 0.07 1.51 7.82 -51.93 -0.41 1.10 16 15 C 0.16 3.64 2.29 -66.95 -0.15 3.48 16 16 H 0.08 1.85 5.81 -52.40 -0.30 1.54 16 17 C -0.12 -2.54 5.10 -24.90 -0.13 -2.66 16 18 C -0.15 -3.24 7.09 -24.58 -0.17 -3.41 16 19 C 0.18 4.47 5.41 -2.53 -0.01 4.46 16 20 N -0.60 -15.44 2.78 -162.57 -0.45 -15.89 16 21 C -0.22 -6.20 9.69 -15.06 -0.15 -6.35 16 22 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 23 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 24 N -0.92 -27.11 10.57 55.49 0.59 -26.53 16 25 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H 0.05 0.38 6.92 -51.93 -0.36 0.02 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.93 7.59 -51.93 -0.39 0.53 16 37 H 0.10 0.96 7.03 -51.92 -0.37 0.60 16 38 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.15 5.52 -51.93 -0.29 0.87 16 45 H 0.09 1.91 7.98 -51.93 -0.41 1.49 16 46 H 0.08 1.74 5.62 -51.87 -0.29 1.45 16 47 H 0.05 1.02 5.20 -51.93 -0.27 0.75 16 48 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.06 1.85 6.93 -51.93 -0.36 1.49 16 51 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 52 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -31.43 393.05 -11.50 -42.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.22 Total: 1.81 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.69 Total: -2.48 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.35 Total: -51.84 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.05 Total: -9.30 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.18 Total: -4.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.43 -11.50 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.071 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds