Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47115 * 2 1 4 4 S 1.81398 * 109.47032 * 119.99672 * 2 1 3 5 5 C 1.81400 * 102.99845 * 65.00105 * 4 2 1 6 6 C 1.50706 * 109.47153 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99655 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99875 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.62821 * 2.39915 * 8 6 5 10 10 C 1.53196 * 108.77297 * 126.39203 * 9 8 6 11 11 C 1.53045 * 109.31290 * 54.63110 * 10 9 8 12 12 C 1.53040 * 109.53824 * 298.63319 * 11 10 9 13 13 C 1.46928 * 120.62707 * 182.39918 * 8 6 5 14 14 H 1.08996 * 109.70521 * 113.75530 * 13 8 6 15 15 C 1.53004 * 109.58780 * 353.39469 * 13 8 6 16 16 H 1.08999 * 109.99633 * 53.30550 * 15 13 8 17 17 C 1.54320 * 109.88078 * 292.21079 * 15 13 8 18 18 C 1.55161 * 102.94087 * 218.38995 * 17 15 13 19 19 C 1.54912 * 101.58041 * 35.50015 * 18 17 15 20 20 N 1.47020 * 109.88045 * 174.39832 * 15 13 8 21 21 C 1.36937 * 125.65283 * 298.62854 * 20 15 13 22 22 H 1.08006 * 119.99532 * 345.25627 * 21 20 15 23 23 C 1.38803 * 120.00353 * 165.26023 * 21 20 15 24 24 N 1.31621 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 89.99874 * 25 23 21 27 27 H 1.48505 * 109.47190 * 209.99927 * 25 23 21 28 28 H 1.48495 * 109.47227 * 329.99914 * 25 23 21 29 29 H 1.08989 * 109.46943 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46859 * 300.00261 * 1 2 3 31 31 H 1.08994 * 109.46594 * 60.00083 * 1 2 3 32 32 H 1.09003 * 109.47178 * 239.99905 * 2 1 3 33 33 H 1.08999 * 109.47060 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47003 * 300.00060 * 3 2 1 35 35 H 1.09003 * 109.47175 * 59.99903 * 3 2 1 36 36 H 1.08996 * 109.47292 * 60.00157 * 5 4 2 37 37 H 1.09002 * 109.47007 * 299.99935 * 5 4 2 38 38 H 1.08997 * 109.59363 * 6.60528 * 9 8 6 39 39 H 1.09006 * 109.70133 * 246.24211 * 9 8 6 40 40 H 1.09002 * 109.49550 * 294.67967 * 10 9 8 41 41 H 1.08998 * 109.52588 * 174.59737 * 10 9 8 42 42 H 1.08999 * 109.45802 * 178.61526 * 11 10 9 43 43 H 1.09002 * 109.45767 * 58.65518 * 11 10 9 44 44 H 1.08999 * 109.49860 * 301.41798 * 12 11 10 45 45 H 1.08997 * 109.52568 * 181.32942 * 12 11 10 46 46 H 1.09001 * 110.71971 * 100.02943 * 17 15 13 47 47 H 1.08993 * 110.87574 * 336.82090 * 17 15 13 48 48 H 1.09009 * 111.00453 * 277.43184 * 18 17 15 49 49 H 1.08999 * 111.00911 * 153.57486 * 18 17 15 50 50 H 1.09001 * 110.36662 * 204.15427 * 19 18 17 51 51 H 1.09002 * 110.45587 * 81.87829 * 19 18 17 52 52 H 0.96998 * 120.00201 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 -2.5592 1.2291 6 6 1.9984 -3.4105 2.3952 7 8 2.6272 -2.9161 3.3068 8 7 1.6850 -4.7210 2.4255 9 6 0.9685 -5.3454 1.3050 10 6 1.7631 -6.5663 0.8308 11 6 2.0113 -7.5007 2.0171 12 6 2.8359 -6.7708 3.0798 13 6 2.0534 -5.5522 3.5797 14 1 1.1527 -5.8833 4.0966 15 6 2.9263 -4.7403 4.5388 16 1 2.4277 -3.8058 4.7960 17 6 4.2912 -4.4438 3.8827 18 6 5.2841 -4.5864 5.0665 19 6 4.6407 -5.7409 5.8746 20 7 3.1878 -5.5195 5.7578 21 6 2.2388 -5.9700 6.6361 22 1 1.2364 -5.5694 6.6003 23 6 2.5649 -6.9414 7.5724 24 7 3.7864 -7.4299 7.6157 25 14 1.2704 -7.5555 8.7710 26 1 0.5599 -8.7177 8.1795 27 1 1.9253 -7.9683 10.0383 28 1 0.2970 -6.4688 9.0479 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0002 -2.9547 0.3107 37 1 0.4792 -2.5720 1.1524 38 1 0.8745 -4.6306 0.4875 39 1 -0.0229 -5.6592 1.6320 40 1 2.7180 -6.2409 0.4180 41 1 1.1963 -7.0944 0.0641 42 1 2.5552 -8.3821 1.6775 43 1 1.0563 -7.8060 2.4449 44 1 3.7807 -6.4435 2.6458 45 1 3.0326 -7.4440 3.9142 46 1 4.3138 -3.4310 3.4804 47 1 4.5138 -5.1720 3.1029 48 1 5.3226 -3.6707 5.6567 49 1 6.2771 -4.8633 4.7125 50 1 4.9493 -5.6910 6.9188 51 1 4.9133 -6.7048 5.4448 52 1 4.0144 -8.1085 8.2702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661978620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -0.887086 kcal Electronic energy + Delta-G solvation = -29788.858068 eV Core-core repulsion = 26108.610213 eV Total energy + Delta-G solvation = -3680.247855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86690 -38.87277 -38.09155 -35.59711 -34.61791 -33.89967 -32.80540 -31.21507 -30.54559 -28.54082 -27.97005 -26.52909 -25.64189 -24.18975 -22.83364 -22.30139 -21.64733 -21.29185 -19.54125 -19.01101 -17.62743 -17.47744 -16.92012 -16.65151 -16.52665 -16.32262 -15.78851 -15.70191 -15.19424 -15.18125 -14.95553 -14.71373 -14.40497 -14.24182 -14.09917 -13.89978 -13.81643 -13.51856 -13.09874 -13.02123 -12.92178 -12.77402 -12.70032 -12.52906 -12.35413 -12.17069 -12.06078 -12.03478 -11.95266 -11.92860 -11.66988 -11.57490 -11.34782 -11.17956 -11.04014 -10.66661 -10.55314 -10.07894 -9.38515 -8.66390 -8.60899 -7.82497 -5.18486 0.56675 1.42881 1.44726 1.53542 1.66619 1.67517 2.08682 2.51402 3.32600 3.52416 3.78589 3.90736 3.92496 3.93903 3.99032 4.01782 4.11127 4.14599 4.21872 4.25457 4.33636 4.38418 4.39894 4.46909 4.56208 4.68365 4.76660 4.80280 4.83112 4.86056 4.89739 4.89953 4.99963 5.01886 5.06020 5.10052 5.22962 5.28276 5.29025 5.29799 5.31206 5.34839 5.48220 5.54010 5.62612 5.69908 5.77785 5.88186 6.26391 6.55722 7.13566 7.31480 7.84676 8.54345 9.28303 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003434 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.569684 B = 8150.878589 C = 8687.481893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.132 4.132 4 S -0.258 6.258 5 C -0.102 4.102 6 C 0.504 3.496 7 O -0.533 6.533 8 N -0.599 5.599 9 C 0.100 3.900 10 C -0.123 4.123 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.151 3.849 14 H 0.044 0.956 15 C 0.165 3.835 16 H 0.048 0.952 17 C -0.106 4.106 18 C -0.142 4.142 19 C 0.186 3.814 20 N -0.613 5.613 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.059 4.059 24 N -0.946 5.946 25 Si 0.970 3.030 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.027 0.973 51 H -0.002 1.002 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 9.789 -24.545 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.190 4.190 4 S -0.033 6.033 5 C -0.253 4.253 6 C 0.293 3.707 7 O -0.411 6.411 8 N -0.333 5.333 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.046 3.954 14 H 0.062 0.938 15 C 0.059 3.941 16 H 0.065 0.935 17 C -0.143 4.143 18 C -0.180 4.180 19 C 0.061 3.939 20 N -0.338 5.338 21 C -0.360 4.360 22 H 0.085 0.915 23 C -0.253 4.253 24 N -0.594 5.594 25 Si 0.799 3.201 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.045 0.955 51 H 0.016 0.984 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.323 10.340 -23.049 26.041 hybrid contribution -1.003 -1.395 0.599 1.820 sum -7.326 8.945 -22.449 25.252 Atomic orbital electron populations 1.22090 0.92384 1.02802 1.03241 1.23289 0.99499 0.99603 0.96835 1.21596 1.01509 0.92654 1.03243 1.87963 1.75662 1.06176 1.33449 1.23468 1.06419 0.94560 1.00823 1.20279 0.79960 0.82531 0.87973 1.90741 1.39183 1.73213 1.37941 1.48178 1.57355 1.07777 1.19989 1.22081 0.95357 0.96326 0.88419 1.21879 1.01335 0.95569 0.97337 1.21525 0.99680 0.98530 0.95742 1.21789 0.98832 0.96224 0.98396 1.21563 0.97059 0.91412 0.85411 0.93826 1.21645 0.95131 0.92009 0.85289 0.93454 1.22918 0.93281 1.01734 0.96357 1.22920 0.98606 0.98529 0.97953 1.21084 0.83487 0.92716 0.96603 1.44935 1.02508 1.63316 1.23085 1.19186 0.92001 1.14909 1.09938 0.91544 1.25616 0.98675 0.98735 1.02238 1.70155 1.19058 1.31955 1.38278 0.85205 0.78478 0.78313 0.78134 1.20927 1.22091 1.19929 0.92045 0.92494 0.89913 0.88116 0.92312 0.88863 0.92679 0.84916 0.85437 0.86639 0.90648 0.91365 0.87697 0.91258 0.92517 0.91827 0.94318 0.89364 0.91779 0.93264 0.90590 0.95455 0.98422 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.10 71.98 0.66 -0.95 16 2 C -0.06 -0.88 3.38 30.60 0.10 -0.77 16 3 C -0.13 -1.68 9.20 71.98 0.66 -1.02 16 4 S -0.26 -6.08 20.29 -56.49 -1.15 -7.22 16 5 C -0.10 -1.95 4.48 71.24 0.32 -1.63 16 6 C 0.50 14.83 7.25 87.66 0.64 15.47 16 7 O -0.53 -20.70 8.78 -3.03 -0.03 -20.72 16 8 N -0.60 -16.84 2.95 -794.99 -2.34 -19.19 16 9 C 0.10 1.73 6.34 86.36 0.55 2.28 16 10 C -0.12 -2.09 6.08 30.67 0.19 -1.91 16 11 C -0.12 -2.99 5.88 30.62 0.18 -2.81 16 12 C -0.11 -4.10 4.96 30.67 0.15 -3.95 16 13 C 0.15 5.79 2.70 44.98 0.12 5.91 16 14 H 0.04 1.91 7.82 -2.39 -0.02 1.89 16 15 C 0.16 7.60 2.29 45.34 0.10 7.70 16 16 H 0.05 2.48 5.81 -15.30 -0.09 2.39 16 17 C -0.11 -4.38 5.10 31.78 0.16 -4.21 16 18 C -0.14 -6.26 7.09 31.99 0.23 -6.03 16 19 C 0.19 10.06 5.41 86.86 0.47 10.53 16 20 N -0.61 -33.63 2.78 -668.26 -1.86 -35.49 16 21 C -0.23 -13.59 9.69 84.03 0.81 -12.77 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 24 N -0.95 -58.73 10.57 21.65 0.23 -58.51 16 25 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 26 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 29 H 0.06 0.60 6.92 -2.39 -0.02 0.58 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 1.73 7.59 -2.39 -0.02 1.71 16 37 H 0.13 1.82 7.03 -2.39 -0.02 1.81 16 38 H 0.12 1.13 5.95 -2.39 -0.01 1.11 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 2.26 5.52 -2.39 -0.01 2.25 16 45 H 0.04 1.76 7.98 -2.39 -0.02 1.74 16 46 H 0.09 3.68 5.62 -6.98 -0.04 3.64 16 47 H 0.06 2.48 5.20 -2.39 -0.01 2.47 16 48 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 49 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 50 H 0.03 1.65 6.93 -2.39 -0.02 1.63 16 51 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 16 52 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -75.53 393.05 3.47 -72.06 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.78 Total: 16.75 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.80 Total: 2.80 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -3.97 Total: -113.19 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.03 Total: -20.72 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -1.15 Total: -7.22 kcal Total: -75.53 3.47 -72.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.171 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds