Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46885 * 2 1 4 4 S 1.81395 * 109.47222 * 120.00211 * 2 1 3 5 5 C 1.81402 * 103.00004 * 174.99951 * 4 2 1 6 6 C 1.50700 * 109.47197 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00136 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00274 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63037 * 6.55101 * 8 6 5 10 10 C 1.53194 * 108.77695 * 233.58487 * 9 8 6 11 11 C 1.53041 * 109.31165 * 305.36514 * 10 9 8 12 12 C 1.53033 * 109.53903 * 61.36220 * 11 10 9 13 13 C 1.46925 * 120.63411 * 186.52486 * 8 6 5 14 14 H 1.08999 * 109.70478 * 246.27227 * 13 8 6 15 15 C 1.52999 * 109.58686 * 6.62614 * 13 8 6 16 16 H 1.09004 * 109.87806 * 302.22434 * 15 13 8 17 17 C 1.54324 * 109.88147 * 63.23584 * 15 13 8 18 18 C 1.55165 * 102.94263 * 141.76603 * 17 15 13 19 19 C 1.54909 * 101.61613 * 324.48208 * 18 17 15 20 20 N 1.47019 * 110.01454 * 181.12326 * 15 13 8 21 21 C 1.36936 * 125.64643 * 61.53324 * 20 15 13 22 22 H 1.07993 * 120.00242 * 329.43927 * 21 20 15 23 23 C 1.38814 * 120.00167 * 149.43605 * 21 20 15 24 24 N 1.31620 * 120.00389 * 155.70616 * 23 21 20 25 25 Si 1.86800 * 119.99914 * 335.71373 * 23 21 20 26 26 H 1.48508 * 109.47257 * 88.78042 * 25 23 21 27 27 H 1.48500 * 109.47453 * 208.77835 * 25 23 21 28 28 H 1.48496 * 109.47143 * 328.78357 * 25 23 21 29 29 H 1.09000 * 109.46858 * 299.99865 * 1 2 3 30 30 H 1.09000 * 109.47413 * 60.00162 * 1 2 3 31 31 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46858 * 240.00135 * 2 1 3 33 33 H 1.09000 * 109.47262 * 60.00383 * 3 2 1 34 34 H 1.09010 * 109.47075 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47370 * 299.99930 * 3 2 1 36 36 H 1.08998 * 109.46828 * 60.00225 * 5 4 2 37 37 H 1.08997 * 109.47042 * 299.99770 * 5 4 2 38 38 H 1.08995 * 109.59047 * 113.79777 * 9 8 6 39 39 H 1.09004 * 109.58676 * 353.37225 * 9 8 6 40 40 H 1.08993 * 109.49907 * 185.40868 * 10 9 8 41 41 H 1.09007 * 109.49591 * 65.31474 * 10 9 8 42 42 H 1.08996 * 109.45570 * 301.33941 * 11 10 9 43 43 H 1.09000 * 109.44544 * 181.37920 * 11 10 9 44 44 H 1.09000 * 109.49773 * 178.68588 * 12 11 10 45 45 H 1.09002 * 109.52437 * 58.60254 * 12 11 10 46 46 H 1.09000 * 110.71878 * 23.40666 * 17 15 13 47 47 H 1.08997 * 110.72488 * 260.12735 * 17 15 13 48 48 H 1.08998 * 111.00511 * 82.57348 * 18 17 15 49 49 H 1.08997 * 111.00270 * 206.39222 * 18 17 15 50 50 H 1.08997 * 110.36824 * 155.86590 * 19 18 17 51 51 H 1.09005 * 110.36950 * 278.19094 * 19 18 17 52 52 H 0.96996 * 120.00008 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 3.9308 -0.8875 1.2289 6 6 4.5896 -1.5774 2.3955 7 8 3.9139 -2.0057 3.3071 8 7 5.9294 -1.7195 2.4254 9 6 6.7725 -1.0844 1.4035 10 6 7.6713 -2.1523 0.7722 11 6 8.4531 -2.8716 1.8739 12 6 7.4758 -3.5641 2.8263 13 6 6.5748 -2.5121 3.4808 14 1 7.1756 -1.8600 4.1148 15 6 5.5059 -3.2069 4.3268 16 1 4.8305 -2.4651 4.7529 17 6 4.7105 -4.2009 3.4545 18 6 4.4802 -5.3983 4.4141 19 6 5.7997 -5.4059 5.2256 20 7 6.1409 -3.9816 5.4029 21 6 6.9206 -3.4666 6.4038 22 1 7.5155 -2.5833 6.2247 23 6 6.9465 -4.0799 7.6489 24 7 7.9882 -3.9237 8.4380 25 14 5.5028 -5.1272 8.2043 26 1 5.7067 -6.5286 7.7569 27 1 5.4050 -5.0899 9.6856 28 1 4.2491 -4.5960 7.6118 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 4.3053 0.1333 1.1523 37 1 4.1591 -1.4282 0.3104 38 1 7.3898 -0.3143 1.8660 39 1 6.1415 -0.6372 0.6354 40 1 8.3685 -1.6789 0.0811 41 1 7.0563 -2.8728 0.2328 42 1 9.0488 -2.1468 2.4287 43 1 9.1115 -3.6154 1.4251 44 1 8.0339 -4.0955 3.5972 45 1 6.8626 -4.2716 2.2681 46 1 5.2964 -4.5082 2.5882 47 1 3.7600 -3.7670 3.1443 48 1 3.6233 -5.2193 5.0635 49 1 4.3586 -6.3274 3.8574 50 1 5.6472 -5.8836 6.1934 51 1 6.5847 -5.9176 4.6686 52 1 8.0064 -4.3526 9.3078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661978621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 19.581799 kcal Electronic energy + Delta-G solvation = -29854.018809 eV Core-core repulsion = 26174.658552 eV Total energy + Delta-G solvation = -3679.360257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66303 -37.49813 -36.92206 -35.03266 -32.89893 -32.45803 -31.66228 -29.87230 -29.55851 -27.57239 -27.24715 -24.74589 -24.10716 -22.90164 -22.17231 -21.10163 -20.49140 -19.75886 -18.40122 -17.22366 -16.69229 -16.14492 -15.87735 -15.66347 -15.32596 -14.94912 -14.69085 -14.48444 -14.20464 -13.97756 -13.74252 -13.59688 -13.44606 -13.17518 -12.97966 -12.84590 -12.58656 -12.45250 -12.15897 -11.82337 -11.74241 -11.60307 -11.48555 -11.36921 -11.35542 -11.05918 -11.01064 -10.76185 -10.59589 -10.47536 -10.24825 -9.85824 -9.81232 -9.74115 -9.62855 -9.46565 -8.72059 -8.36213 -8.15017 -7.72373 -6.72510 -5.89952 -3.20715 1.35784 2.40172 2.74321 3.17467 3.41996 3.57087 3.67415 4.44305 4.46707 4.55748 4.65815 4.73526 4.82364 4.91037 4.93474 5.01917 5.05459 5.18022 5.24527 5.32523 5.34785 5.39288 5.42354 5.46440 5.48193 5.50531 5.66529 5.71732 5.80630 5.81487 5.82857 5.85077 5.90288 5.96807 6.09964 6.20389 6.32539 6.35001 6.37577 6.55595 6.65811 6.73445 6.79786 6.94220 6.98252 7.06799 7.44724 7.61144 7.98722 8.36907 8.48546 8.99294 9.80169 10.39861 11.26779 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003791 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.221839 B = 7383.240432 C = 8586.994437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.177 6.177 5 C -0.126 4.126 6 C 0.516 3.484 7 O -0.488 6.488 8 N -0.601 5.601 9 C 0.108 3.892 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.141 3.859 14 H 0.075 0.925 15 C 0.160 3.840 16 H 0.084 0.916 17 C -0.129 4.129 18 C -0.138 4.138 19 C 0.116 3.884 20 N -0.602 5.602 21 C -0.239 4.239 22 H 0.082 0.918 23 C 0.030 3.970 24 N -0.905 5.905 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.305 1.305 28 H -0.271 1.271 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.026 0.974 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 7.930 -22.942 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.049 5.951 5 C -0.277 4.277 6 C 0.302 3.698 7 O -0.363 6.363 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.158 4.158 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.093 0.907 15 C 0.054 3.946 16 H 0.101 0.899 17 C -0.166 4.166 18 C -0.176 4.176 19 C -0.009 4.009 20 N -0.329 5.329 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.170 4.170 24 N -0.548 5.548 25 Si 0.711 3.289 26 H -0.214 1.214 27 H -0.233 1.233 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.044 0.956 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.228 7.308 -21.348 24.017 hybrid contribution 0.330 -0.115 -0.777 0.852 sum -7.899 7.193 -22.125 24.569 Atomic orbital electron populations 1.21558 0.91716 1.03033 1.02640 1.23238 1.00078 0.98819 0.99158 1.22099 1.00957 0.94711 1.02898 1.87616 1.01737 1.76343 1.29390 1.23619 0.97170 1.04804 1.02103 1.19499 0.82421 0.80779 0.87110 1.90756 1.63298 1.46390 1.35872 1.48105 1.04864 1.51572 1.29034 1.21714 0.93813 0.95392 0.90683 1.21908 0.98638 0.98318 0.98217 1.21545 0.97982 0.99651 0.96649 1.21941 0.97345 0.97984 0.98957 1.21994 0.95692 0.91906 0.86713 0.90736 1.21619 0.90377 0.94178 0.88462 0.89859 1.23135 1.01040 0.95399 0.97029 1.22779 0.98666 0.97692 0.98472 1.21950 0.93564 0.87892 0.97456 1.44903 1.58781 1.00640 1.28526 1.18492 1.17006 1.12936 0.88258 0.89998 1.25235 0.97065 0.98792 0.95875 1.69874 1.27464 1.46258 1.11180 0.86959 0.86084 0.79722 0.76177 1.21382 1.23350 1.19587 0.91585 0.91326 0.91601 0.89803 0.91202 0.92720 0.91982 0.87876 0.87948 0.91251 0.90588 0.91240 0.91784 0.91876 0.92151 0.89391 0.91867 0.92674 0.89154 0.91972 0.92417 0.93820 0.95644 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.08 -0.68 3.38 -26.73 -0.09 -0.77 16 3 C -0.15 -1.02 9.10 37.16 0.34 -0.68 16 4 S -0.18 -2.14 20.29 -107.50 -2.18 -4.33 16 5 C -0.13 -1.35 4.48 36.01 0.16 -1.19 16 6 C 0.52 7.66 6.87 -10.99 -0.08 7.58 16 7 O -0.49 -9.18 9.12 5.55 0.05 -9.13 16 8 N -0.60 -8.51 2.93 -165.23 -0.48 -8.99 16 9 C 0.11 1.08 6.35 -3.71 -0.02 1.06 16 10 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 11 C -0.12 -1.50 5.88 -26.69 -0.16 -1.65 16 12 C -0.12 -2.00 4.96 -26.62 -0.13 -2.14 16 13 C 0.14 2.52 2.67 -67.60 -0.18 2.34 16 14 H 0.07 1.51 7.56 -51.93 -0.39 1.12 16 15 C 0.16 3.40 2.29 -66.95 -0.15 3.25 16 16 H 0.08 2.04 5.89 -52.13 -0.31 1.74 16 17 C -0.13 -2.43 4.90 -24.89 -0.12 -2.56 16 18 C -0.14 -2.74 7.08 -24.58 -0.17 -2.91 16 19 C 0.12 2.68 6.32 -2.47 -0.02 2.66 16 20 N -0.60 -14.93 2.21 -162.49 -0.36 -15.29 16 21 C -0.24 -6.84 10.12 -15.06 -0.15 -6.99 16 22 H 0.08 2.47 7.58 -52.49 -0.40 2.07 16 23 C 0.03 0.89 5.40 -17.43 -0.09 0.80 16 24 N -0.91 -28.25 13.97 55.49 0.78 -27.48 16 25 Si 0.88 23.64 25.27 -169.99 -4.30 19.34 16 26 H -0.29 -7.43 6.42 56.52 0.36 -7.07 16 27 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 28 H -0.27 -7.37 7.11 56.52 0.40 -6.97 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.36 6.92 -51.92 -0.36 0.00 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.91 6.68 -51.93 -0.35 0.56 16 37 H 0.10 0.90 7.95 -51.93 -0.41 0.48 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.69 7.87 -51.93 -0.41 1.28 16 45 H 0.06 1.01 5.72 -51.93 -0.30 0.71 16 46 H 0.05 0.96 5.46 -51.93 -0.28 0.68 16 47 H 0.09 1.75 5.56 -52.08 -0.29 1.46 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.04 1.10 2.95 -51.93 -0.15 0.95 16 51 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -32.90 387.87 -10.39 -43.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -9.05 Total: 0.00 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.69 Total: -3.26 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.07 Total: -51.76 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.05 Total: -9.13 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.30 Total: 19.34 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.18 Total: -4.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.90 -10.39 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.875 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds