Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46885 * 2 1 4 4 S 1.81395 * 109.47222 * 120.00211 * 2 1 3 5 5 C 1.81402 * 103.00004 * 174.99951 * 4 2 1 6 6 C 1.50700 * 109.47197 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00136 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00274 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63037 * 6.55101 * 8 6 5 10 10 C 1.53194 * 108.77695 * 233.58487 * 9 8 6 11 11 C 1.53041 * 109.31165 * 305.36514 * 10 9 8 12 12 C 1.53033 * 109.53903 * 61.36220 * 11 10 9 13 13 C 1.46925 * 120.63411 * 186.52486 * 8 6 5 14 14 H 1.08999 * 109.70478 * 246.27227 * 13 8 6 15 15 C 1.52999 * 109.58686 * 6.62614 * 13 8 6 16 16 H 1.09004 * 109.87806 * 302.22434 * 15 13 8 17 17 C 1.54324 * 109.88147 * 63.23584 * 15 13 8 18 18 C 1.55165 * 102.94263 * 141.76603 * 17 15 13 19 19 C 1.54909 * 101.61613 * 324.48208 * 18 17 15 20 20 N 1.47019 * 110.01454 * 181.12326 * 15 13 8 21 21 C 1.36936 * 125.64643 * 61.53324 * 20 15 13 22 22 H 1.07993 * 120.00242 * 329.43927 * 21 20 15 23 23 C 1.38814 * 120.00167 * 149.43605 * 21 20 15 24 24 N 1.31620 * 120.00389 * 155.70616 * 23 21 20 25 25 Si 1.86800 * 119.99914 * 335.71373 * 23 21 20 26 26 H 1.48508 * 109.47257 * 88.78042 * 25 23 21 27 27 H 1.48500 * 109.47453 * 208.77835 * 25 23 21 28 28 H 1.48496 * 109.47143 * 328.78357 * 25 23 21 29 29 H 1.09000 * 109.46858 * 299.99865 * 1 2 3 30 30 H 1.09000 * 109.47413 * 60.00162 * 1 2 3 31 31 H 1.09005 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46858 * 240.00135 * 2 1 3 33 33 H 1.09000 * 109.47262 * 60.00383 * 3 2 1 34 34 H 1.09010 * 109.47075 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47370 * 299.99930 * 3 2 1 36 36 H 1.08998 * 109.46828 * 60.00225 * 5 4 2 37 37 H 1.08997 * 109.47042 * 299.99770 * 5 4 2 38 38 H 1.08995 * 109.59047 * 113.79777 * 9 8 6 39 39 H 1.09004 * 109.58676 * 353.37225 * 9 8 6 40 40 H 1.08993 * 109.49907 * 185.40868 * 10 9 8 41 41 H 1.09007 * 109.49591 * 65.31474 * 10 9 8 42 42 H 1.08996 * 109.45570 * 301.33941 * 11 10 9 43 43 H 1.09000 * 109.44544 * 181.37920 * 11 10 9 44 44 H 1.09000 * 109.49773 * 178.68588 * 12 11 10 45 45 H 1.09002 * 109.52437 * 58.60254 * 12 11 10 46 46 H 1.09000 * 110.71878 * 23.40666 * 17 15 13 47 47 H 1.08997 * 110.72488 * 260.12735 * 17 15 13 48 48 H 1.08998 * 111.00511 * 82.57348 * 18 17 15 49 49 H 1.08997 * 111.00270 * 206.39222 * 18 17 15 50 50 H 1.08997 * 110.36824 * 155.86590 * 19 18 17 51 51 H 1.09005 * 110.36950 * 278.19094 * 19 18 17 52 52 H 0.96996 * 120.00008 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 3.9308 -0.8875 1.2289 6 6 4.5896 -1.5774 2.3955 7 8 3.9139 -2.0057 3.3071 8 7 5.9294 -1.7195 2.4254 9 6 6.7725 -1.0844 1.4035 10 6 7.6713 -2.1523 0.7722 11 6 8.4531 -2.8716 1.8739 12 6 7.4758 -3.5641 2.8263 13 6 6.5748 -2.5121 3.4808 14 1 7.1756 -1.8600 4.1148 15 6 5.5059 -3.2069 4.3268 16 1 4.8305 -2.4651 4.7529 17 6 4.7105 -4.2009 3.4545 18 6 4.4802 -5.3983 4.4141 19 6 5.7997 -5.4059 5.2256 20 7 6.1409 -3.9816 5.4029 21 6 6.9206 -3.4666 6.4038 22 1 7.5155 -2.5833 6.2247 23 6 6.9465 -4.0799 7.6489 24 7 7.9882 -3.9237 8.4380 25 14 5.5028 -5.1272 8.2043 26 1 5.7067 -6.5286 7.7569 27 1 5.4050 -5.0899 9.6856 28 1 4.2491 -4.5960 7.6118 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 4.3053 0.1333 1.1523 37 1 4.1591 -1.4282 0.3104 38 1 7.3898 -0.3143 1.8660 39 1 6.1415 -0.6372 0.6354 40 1 8.3685 -1.6789 0.0811 41 1 7.0563 -2.8728 0.2328 42 1 9.0488 -2.1468 2.4287 43 1 9.1115 -3.6154 1.4251 44 1 8.0339 -4.0955 3.5972 45 1 6.8626 -4.2716 2.2681 46 1 5.2964 -4.5082 2.5882 47 1 3.7600 -3.7670 3.1443 48 1 3.6233 -5.2193 5.0635 49 1 4.3586 -6.3274 3.8574 50 1 5.6472 -5.8836 6.1934 51 1 6.5847 -5.9176 4.6686 52 1 8.0064 -4.3526 9.3078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661978621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 0.270677 kcal Electronic energy + Delta-G solvation = -29854.856202 eV Core-core repulsion = 26174.658552 eV Total energy + Delta-G solvation = -3680.197650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94925 -39.05115 -38.17081 -35.60462 -34.67640 -33.94611 -32.97562 -31.79771 -30.58615 -28.84145 -28.00178 -26.37376 -25.65820 -24.21796 -22.83828 -22.58924 -21.80003 -21.29161 -19.63271 -19.05413 -17.89914 -17.59012 -17.24924 -16.77474 -16.59926 -16.29975 -15.84452 -15.45566 -15.22339 -15.15607 -15.11106 -14.83861 -14.74909 -14.38639 -14.27145 -14.11478 -14.00711 -13.70310 -13.29419 -13.10360 -13.01312 -12.97330 -12.78519 -12.55835 -12.41756 -12.35758 -12.17901 -12.04559 -11.94557 -11.77511 -11.67302 -11.62707 -11.38162 -11.25559 -11.16032 -10.61044 -10.56465 -10.14367 -9.40764 -8.79039 -8.62192 -8.22573 -5.48375 0.55354 1.22976 1.34487 1.47677 1.62798 1.66355 2.05173 2.39738 3.01266 3.41584 3.54611 3.86200 3.89213 3.91976 3.94150 3.99731 4.05168 4.09208 4.12236 4.16396 4.25118 4.29428 4.39257 4.40679 4.43102 4.65982 4.68394 4.70832 4.76041 4.82494 4.84843 4.88265 4.89098 4.97798 4.99460 5.02420 5.09191 5.14905 5.22374 5.26756 5.28233 5.30565 5.31219 5.35843 5.51760 5.59318 5.78957 5.83740 6.13126 6.50487 6.84229 7.26959 7.57446 8.23201 8.98563 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.003791 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.221839 B = 7383.240432 C = 8586.994437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.147 4.147 4 S -0.260 6.260 5 C -0.102 4.102 6 C 0.508 3.492 7 O -0.536 6.536 8 N -0.599 5.599 9 C 0.100 3.900 10 C -0.123 4.123 11 C -0.118 4.118 12 C -0.114 4.114 13 C 0.151 3.849 14 H 0.036 0.964 15 C 0.159 3.841 16 H 0.046 0.954 17 C -0.109 4.109 18 C -0.131 4.131 19 C 0.109 3.891 20 N -0.617 5.617 21 C -0.224 4.224 22 H 0.051 0.949 23 C -0.024 4.024 24 N -0.948 5.948 25 Si 0.938 3.062 26 H -0.269 1.269 27 H -0.307 1.307 28 H -0.280 1.280 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.096 0.904 50 H 0.025 0.975 51 H 0.036 0.964 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 8.153 -27.679 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C -0.205 4.205 4 S -0.034 6.034 5 C -0.253 4.253 6 C 0.296 3.704 7 O -0.414 6.414 8 N -0.333 5.333 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.046 3.954 14 H 0.054 0.946 15 C 0.054 3.946 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.169 4.169 19 C -0.015 4.015 20 N -0.344 5.344 21 C -0.353 4.353 22 H 0.068 0.932 23 C -0.220 4.220 24 N -0.594 5.594 25 Si 0.769 3.231 26 H -0.197 1.197 27 H -0.236 1.236 28 H -0.205 1.205 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.042 0.958 51 H 0.054 0.946 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.036 7.542 -26.151 28.678 hybrid contribution 0.577 -0.057 0.622 0.850 sum -8.459 7.485 -25.529 27.916 Atomic orbital electron populations 1.21598 0.91421 1.02792 1.03229 1.23282 1.00089 0.98974 0.96815 1.22094 1.01448 0.93767 1.03238 1.87982 1.04106 1.77788 1.33499 1.23469 0.95110 1.05941 1.00767 1.20257 0.82238 0.80166 0.87748 1.90745 1.64282 1.48477 1.37855 1.48131 1.05315 1.51098 1.28787 1.22093 0.94174 0.95530 0.90395 1.21882 0.98804 0.98103 0.97313 1.21531 0.97489 0.99814 0.96773 1.21784 0.97467 0.97415 0.98550 1.21430 0.94530 0.91995 0.87454 0.94596 1.21630 0.90891 0.93846 0.88270 0.93638 1.22986 1.00898 0.93997 0.96788 1.22770 0.96028 0.99887 0.98247 1.22069 0.95679 0.86525 0.97198 1.45022 1.58510 1.02227 1.28600 1.18391 1.16189 1.11492 0.89260 0.93178 1.25757 0.98971 1.01074 0.96205 1.69969 1.29049 1.48593 1.11746 0.85980 0.82567 0.79203 0.75301 1.19651 1.23565 1.20529 0.92717 0.88870 0.92315 0.88055 0.92524 0.91967 0.89915 0.85363 0.84757 0.91126 0.86576 0.87886 0.90813 0.92955 0.90743 0.93464 0.91067 0.90610 0.89079 0.93394 0.88571 0.95764 0.94583 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.20 71.98 0.66 -0.97 16 2 C -0.06 -0.83 3.38 30.59 0.10 -0.73 16 3 C -0.15 -1.53 9.10 71.98 0.66 -0.88 16 4 S -0.26 -5.93 20.29 -56.49 -1.15 -7.08 16 5 C -0.10 -1.86 4.48 71.24 0.32 -1.54 16 6 C 0.51 14.39 6.87 87.66 0.60 14.99 16 7 O -0.54 -20.45 9.12 -3.05 -0.03 -20.48 16 8 N -0.60 -16.11 2.93 -795.05 -2.33 -18.45 16 9 C 0.10 1.64 6.35 86.36 0.55 2.19 16 10 C -0.12 -1.83 6.08 30.67 0.19 -1.65 16 11 C -0.12 -2.71 5.88 30.62 0.18 -2.53 16 12 C -0.11 -3.64 4.96 30.67 0.15 -3.49 16 13 C 0.15 5.54 2.67 44.97 0.12 5.66 16 14 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 15 C 0.16 6.98 2.29 45.34 0.10 7.09 16 16 H 0.05 2.38 5.89 -7.28 -0.04 2.34 16 17 C -0.11 -4.05 4.90 31.79 0.16 -3.89 16 18 C -0.13 -5.06 7.08 31.99 0.23 -4.83 16 19 C 0.11 5.06 6.32 86.83 0.55 5.61 16 20 N -0.62 -31.76 2.21 -668.00 -1.48 -33.24 16 21 C -0.22 -13.54 10.12 84.03 0.85 -12.69 16 22 H 0.05 3.28 7.58 -2.91 -0.02 3.26 16 23 C -0.02 -1.51 5.40 84.86 0.46 -1.05 16 24 N -0.95 -61.74 13.97 21.65 0.30 -61.44 16 25 Si 0.94 50.76 25.27 68.60 1.73 52.50 16 26 H -0.27 -13.71 6.42 99.48 0.64 -13.08 16 27 H -0.31 -16.54 7.11 99.48 0.71 -15.84 16 28 H -0.28 -15.34 7.11 99.48 0.71 -14.64 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.56 6.92 -2.38 -0.02 0.54 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.13 1.69 6.68 -2.39 -0.02 1.68 16 37 H 0.13 1.62 7.95 -2.39 -0.02 1.60 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.03 5.93 -2.39 -0.01 1.02 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.88 7.87 -2.39 -0.02 1.86 16 45 H 0.07 2.13 5.72 -2.39 -0.01 2.12 16 46 H 0.08 2.47 5.46 -2.39 -0.01 2.46 16 47 H 0.09 3.48 5.56 -6.54 -0.04 3.44 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 50 H 0.02 1.23 2.95 -2.39 -0.01 1.22 16 51 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 52 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -78.67 387.87 3.70 -74.97 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.77 Total: 11.93 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.87 Total: 1.29 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.51 Total: -113.13 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.03 Total: -20.48 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.73 Total: 52.50 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -1.15 Total: -7.08 kcal Total: -78.67 3.70 -74.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.243 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds