Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 S 1.81398 * 109.47365 * 120.00211 * 2 1 3 5 5 C 1.81401 * 102.99960 * 64.99959 * 4 2 1 6 6 C 1.50697 * 109.47312 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99765 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00328 * 179.97438 * 6 5 4 9 9 C 1.46922 * 120.63124 * 5.62607 * 8 6 5 10 10 C 1.53200 * 108.77635 * 233.62726 * 9 8 6 11 11 C 1.53044 * 109.31047 * 305.36300 * 10 9 8 12 12 C 1.53047 * 109.53868 * 61.36158 * 11 10 9 13 13 C 1.46927 * 120.63371 * 185.63864 * 8 6 5 14 14 H 1.08999 * 109.59044 * 246.30532 * 13 8 6 15 15 C 1.53003 * 109.58520 * 6.58724 * 13 8 6 16 16 H 1.08995 * 109.99938 * 314.27984 * 15 13 8 17 17 C 1.54330 * 109.99161 * 193.24175 * 15 13 8 18 18 C 1.55159 * 103.02206 * 218.66639 * 17 15 13 19 19 C 1.54908 * 101.58112 * 35.30397 * 18 17 15 20 20 N 1.47025 * 109.88192 * 75.37715 * 15 13 8 21 21 C 1.36939 * 125.64460 * 298.39368 * 20 15 13 22 22 H 1.08002 * 119.99936 * 354.80559 * 21 20 15 23 23 C 1.38809 * 119.99731 * 174.53686 * 21 20 15 24 24 N 1.31614 * 120.00326 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99747 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46999 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47064 * 119.99488 * 25 23 21 28 28 H 1.48501 * 109.46905 * 239.99463 * 25 23 21 29 29 H 1.08995 * 109.47163 * 299.99764 * 1 2 3 30 30 H 1.09003 * 109.47169 * 60.00233 * 1 2 3 31 31 H 1.09007 * 109.46673 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47144 * 240.00079 * 2 1 3 33 33 H 1.09001 * 109.47140 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47005 * 299.99867 * 3 2 1 35 35 H 1.08995 * 109.47006 * 60.00140 * 3 2 1 36 36 H 1.09002 * 109.47282 * 60.00241 * 5 4 2 37 37 H 1.09002 * 109.47406 * 299.99983 * 5 4 2 38 38 H 1.08999 * 109.58555 * 353.40688 * 9 8 6 39 39 H 1.08998 * 109.59203 * 113.84004 * 9 8 6 40 40 H 1.08996 * 109.49669 * 65.31022 * 10 9 8 41 41 H 1.08991 * 109.49945 * 185.41171 * 10 9 8 42 42 H 1.08993 * 109.46004 * 181.38327 * 11 10 9 43 43 H 1.08999 * 109.45797 * 301.34692 * 11 10 9 44 44 H 1.08995 * 109.49381 * 178.68298 * 12 11 10 45 45 H 1.08998 * 109.49291 * 58.58759 * 12 11 10 46 46 H 1.08998 * 110.85006 * 100.20104 * 17 15 13 47 47 H 1.08997 * 110.66876 * 337.04832 * 17 15 13 48 48 H 1.09000 * 111.00668 * 277.23609 * 18 17 15 49 49 H 1.08998 * 111.00703 * 153.38035 * 18 17 15 50 50 H 1.09003 * 110.36751 * 204.15129 * 19 18 17 51 51 H 1.09007 * 110.45693 * 81.88238 * 19 18 17 52 52 H 0.97000 * 120.00248 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8552 1.4811 5 6 1.5665 -2.5593 1.2289 6 6 1.9975 -3.4104 2.3955 7 8 2.6257 -2.9159 3.3075 8 7 1.6840 -4.7208 2.4258 9 6 1.0313 -5.3612 1.2758 10 6 -0.2404 -6.0654 1.7597 11 6 0.1148 -7.0266 2.8965 12 6 0.7059 -6.2382 4.0675 13 6 1.9881 -5.5361 3.6097 14 1 2.7441 -6.2795 3.3570 15 6 2.5088 -4.6362 4.7322 16 1 3.2508 -3.9413 4.3390 17 6 3.1383 -5.4959 5.8486 18 6 2.6948 -4.7660 7.1440 19 6 1.2806 -4.2695 6.7526 20 7 1.3935 -3.8897 5.3327 21 6 0.5891 -2.9943 4.6796 22 1 0.8022 -2.7237 3.6559 23 6 -0.5032 -2.4388 5.3315 24 7 -0.7662 -2.7730 6.5770 25 14 -1.6009 -1.2179 4.4403 26 1 -1.0941 -1.0127 3.0596 27 1 -2.9874 -1.7470 4.3856 28 1 -1.5935 0.0769 5.1675 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0002 -2.9548 0.3104 37 1 0.4793 -2.5723 1.1522 38 1 0.7708 -4.6047 0.5356 39 1 1.7073 -6.0921 0.8322 40 1 -0.9525 -5.3231 2.1201 41 1 -0.6827 -6.6245 0.9353 42 1 -0.7843 -7.5471 3.2261 43 1 0.8457 -7.7535 2.5423 44 1 0.9368 -6.9205 4.8856 45 1 -0.0153 -5.4944 4.4061 46 1 4.2249 -5.5060 5.7645 47 1 2.7414 -6.5107 5.8227 48 1 3.3554 -3.9279 7.3660 49 1 2.6472 -5.4574 7.9853 50 1 1.0016 -3.4053 7.3555 51 1 0.5490 -5.0684 6.8746 52 1 -1.5297 -2.3850 7.0324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661978622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = 36.139548 kcal Electronic energy + Delta-G solvation = -31002.336555 eV Core-core repulsion = 27323.694296 eV Total energy + Delta-G solvation = -3678.642259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37779 -37.11431 -36.55996 -34.71103 -32.52134 -32.36663 -31.28975 -29.31393 -28.91202 -27.24835 -26.94349 -24.60937 -24.01904 -22.57017 -21.87249 -20.55976 -20.00164 -19.44757 -18.39584 -16.99863 -16.42562 -16.28710 -15.43358 -15.31073 -14.79164 -14.53782 -14.19252 -14.03247 -14.02261 -13.68213 -13.53843 -13.44735 -13.00636 -12.89313 -12.76393 -12.32873 -12.18955 -11.91114 -11.70511 -11.65022 -11.43027 -11.28513 -11.13202 -11.07432 -10.93105 -10.85096 -10.70958 -10.58968 -10.48797 -10.14559 -9.99867 -9.84055 -9.68013 -9.50791 -9.43845 -8.91697 -8.40851 -8.05134 -7.84715 -7.28641 -6.42039 -5.41483 -2.72874 1.74365 2.78794 3.19706 3.49518 3.55847 3.58822 3.59325 4.71652 4.76695 4.80084 4.87787 5.00687 5.13955 5.22412 5.23055 5.30791 5.41979 5.52172 5.54093 5.62657 5.66464 5.66922 5.70221 5.73538 5.76666 5.78537 5.83791 5.91052 6.01665 6.10104 6.11431 6.14566 6.19298 6.22465 6.32068 6.45474 6.46967 6.55922 6.62319 6.75724 6.85326 6.93872 7.11136 7.36003 7.63169 7.78115 7.92826 8.00754 8.10262 8.59271 8.91533 9.50819 10.13959 10.80988 11.67425 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.005671 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.371147 B = 4936.411842 C = 5693.372208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.129 4.129 4 S -0.167 6.167 5 C -0.130 4.130 6 C 0.540 3.460 7 O -0.471 6.471 8 N -0.599 5.599 9 C 0.111 3.889 10 C -0.134 4.134 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.145 3.855 14 H 0.051 0.949 15 C 0.122 3.878 16 H 0.112 0.888 17 C -0.130 4.130 18 C -0.146 4.146 19 C 0.164 3.836 20 N -0.577 5.577 21 C -0.187 4.187 22 H 0.092 0.908 23 C -0.025 4.025 24 N -0.930 5.930 25 Si 0.890 3.110 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.295 1.295 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.010 0.990 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -3.910 -14.286 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.215 4.215 3 C -0.188 4.188 4 S 0.059 5.941 5 C -0.281 4.281 6 C 0.326 3.674 7 O -0.346 6.346 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.164 4.164 13 C 0.040 3.960 14 H 0.069 0.931 15 C 0.015 3.985 16 H 0.129 0.871 17 C -0.169 4.169 18 C -0.184 4.184 19 C 0.039 3.961 20 N -0.300 5.300 21 C -0.316 4.316 22 H 0.109 0.891 23 C -0.218 4.218 24 N -0.582 5.582 25 Si 0.723 3.277 26 H -0.200 1.200 27 H -0.228 1.228 28 H -0.222 1.222 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.028 0.972 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.039 -3.066 -12.918 14.201 hybrid contribution -1.791 -0.200 -1.542 2.372 sum 3.248 -3.267 -14.460 15.176 Atomic orbital electron populations 1.22107 0.93589 1.02330 1.02723 1.23222 0.98905 1.00010 0.99386 1.21538 1.01623 0.93069 1.02549 1.87623 1.73377 1.04015 1.29047 1.23723 1.05376 0.97079 1.01963 1.19121 0.80361 0.81808 0.86061 1.90697 1.38555 1.71057 1.34267 1.47783 1.60557 1.08363 1.16630 1.21630 0.94250 0.97049 0.88396 1.21886 0.97532 0.99311 0.98479 1.21509 1.00192 0.97374 0.96314 1.21922 0.98907 0.99558 0.96033 1.22045 0.95655 0.92753 0.85507 0.93099 1.22420 0.93847 0.91934 0.90317 0.87123 1.22670 0.98690 0.98417 0.97135 1.22981 1.01111 0.98723 0.95631 1.21646 0.89225 0.98847 0.86407 1.44312 1.33589 1.46037 1.06038 1.19682 1.01361 1.13683 0.96846 0.89067 1.24733 0.99131 1.01287 0.96679 1.69903 1.30020 1.47694 1.10559 0.86285 0.80377 0.81673 0.79395 1.19972 1.22827 1.22221 0.91140 0.92238 0.92736 0.90086 0.91738 0.91557 0.91556 0.88563 0.87923 0.90830 0.92008 0.90982 0.91800 0.92487 0.93068 0.92317 0.87955 0.92910 0.92863 0.92586 0.93146 0.89355 0.97161 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.10 37.16 0.34 -1.51 16 2 C -0.09 -1.07 3.38 -26.73 -0.09 -1.16 16 3 C -0.13 -1.41 9.20 37.16 0.34 -1.07 16 4 S -0.17 -2.85 20.29 -107.50 -2.18 -5.03 16 5 C -0.13 -2.05 4.34 36.00 0.16 -1.90 16 6 C 0.54 10.27 4.77 -10.99 -0.05 10.21 16 7 O -0.47 -10.77 9.40 5.55 0.05 -10.72 16 8 N -0.60 -10.20 2.83 -165.22 -0.47 -10.67 16 9 C 0.11 1.43 6.35 -3.71 -0.02 1.40 16 10 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 11 C -0.12 -1.65 5.88 -26.68 -0.16 -1.81 16 12 C -0.13 -2.27 4.94 -26.61 -0.13 -2.40 16 13 C 0.15 2.62 2.52 -67.60 -0.17 2.45 16 14 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 15 C 0.12 2.58 2.32 -66.95 -0.16 2.42 16 16 H 0.11 2.62 4.88 -56.93 -0.28 2.34 16 17 C -0.13 -2.44 6.33 -24.89 -0.16 -2.59 16 18 C -0.15 -2.98 7.09 -24.58 -0.17 -3.15 16 19 C 0.16 4.09 5.67 -2.53 -0.01 4.08 16 20 N -0.58 -14.43 1.92 -162.57 -0.31 -14.74 16 21 C -0.19 -5.07 7.56 -15.06 -0.11 -5.19 16 22 H 0.09 2.39 3.42 -52.49 -0.18 2.21 16 23 C -0.02 -0.71 5.48 -17.43 -0.10 -0.81 16 24 N -0.93 -27.96 10.22 55.49 0.57 -27.40 16 25 Si 0.89 22.89 29.55 -169.99 -5.02 17.86 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.68 6.92 -51.93 -0.36 0.32 16 32 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.19 7.71 -51.92 -0.40 0.79 16 37 H 0.10 1.61 6.92 -51.92 -0.36 1.25 16 38 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.05 7.10 -51.93 -0.37 0.68 16 45 H 0.10 2.35 6.40 -51.93 -0.33 2.02 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 0.92 6.77 -51.93 -0.35 0.57 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 2.53 6.24 -51.93 -0.32 2.21 16 51 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 52 H 0.24 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -31.96 387.37 -11.35 -43.30 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -9.16 Total: 4.50 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.66 Total: -2.96 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.21 Total: -52.80 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.05 Total: -10.72 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.18 Total: -5.03 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.96 -11.35 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.444 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds