Wall clock time and date at job start Sat Apr 11 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46962 * 2 1 4 4 N 1.46896 * 109.47018 * 120.00026 * 2 1 3 5 5 C 1.48563 * 110.99855 * 175.09684 * 4 2 1 6 6 C 1.54378 * 104.59726 * 200.95948 * 5 4 2 7 7 C 1.54259 * 105.05840 * 23.85161 * 6 5 4 8 8 H 1.09006 * 110.32325 * 241.00576 * 7 6 5 9 9 C 1.52999 * 110.32540 * 118.89800 * 7 6 5 10 10 H 1.08999 * 109.69990 * 53.93623 * 9 7 6 11 11 C 1.53187 * 109.58393 * 293.58019 * 9 7 6 12 12 C 1.53044 * 109.31347 * 185.57670 * 11 9 7 13 13 C 1.53040 * 109.53829 * 61.35927 * 12 11 9 14 14 C 1.53192 * 109.31772 * 298.64066 * 13 12 11 15 15 N 1.46922 * 109.58873 * 174.28846 * 9 7 6 16 16 C 1.34784 * 120.63299 * 353.41907 * 15 9 7 17 17 O 1.21281 * 119.99699 * 3.58547 * 16 15 9 18 18 C 1.50698 * 120.00072 * 183.58296 * 16 15 9 19 19 S 1.80999 * 109.46880 * 184.91772 * 18 16 15 20 20 C 1.76198 * 99.99954 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99641 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00216 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99988 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00102 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47014 * 120.00215 * 24 22 20 27 27 H 1.48502 * 109.46633 * 239.99976 * 24 22 20 28 28 C 1.48724 * 111.01979 * 59.58888 * 4 2 1 29 29 H 1.08998 * 109.47724 * 60.00040 * 1 2 3 30 30 H 1.08999 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46949 * 300.00183 * 1 2 3 32 32 H 1.09003 * 109.46949 * 239.99817 * 2 1 3 33 33 H 1.09001 * 109.46929 * 185.03455 * 3 2 1 34 34 H 1.09003 * 109.47094 * 305.02954 * 3 2 1 35 35 H 1.08998 * 109.47736 * 65.03398 * 3 2 1 36 36 H 1.08997 * 110.41040 * 82.17966 * 5 4 2 37 37 H 1.08995 * 110.41297 * 319.73729 * 5 4 2 38 38 H 1.09000 * 110.32488 * 264.95944 * 6 5 4 39 39 H 1.08998 * 110.32442 * 142.74927 * 6 5 4 40 40 H 1.08999 * 109.49886 * 305.52168 * 11 9 7 41 41 H 1.08996 * 109.50233 * 65.59548 * 11 9 7 42 42 H 1.08994 * 109.46386 * 181.38354 * 12 11 9 43 43 H 1.09004 * 109.45793 * 301.34565 * 12 11 9 44 44 H 1.09002 * 109.49398 * 58.59108 * 13 12 11 45 45 H 1.09000 * 109.50073 * 178.64996 * 13 12 11 46 46 H 1.08991 * 109.58633 * 174.42109 * 14 13 12 47 47 H 1.08996 * 109.58079 * 294.84667 * 14 13 12 48 48 H 1.08996 * 109.47379 * 304.92215 * 18 16 15 49 49 H 1.09010 * 109.46673 * 64.92294 * 18 16 15 50 50 H 0.96999 * 119.99873 * 180.02562 * 23 22 20 51 51 H 1.08999 * 110.38647 * 40.24000 * 28 4 2 52 52 H 1.08997 * 110.50646 * 277.75123 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.5000 -0.8158 1.1759 6 6 3.8091 -1.9768 2.1453 7 6 2.5177 -2.8196 2.1859 8 1 2.1158 -2.8479 3.1988 9 6 2.7933 -4.2387 1.6847 10 1 3.6190 -4.6735 2.2479 11 6 3.1527 -4.1967 0.1961 12 6 3.2907 -5.6265 -0.3318 13 6 1.9564 -6.3600 -0.1775 14 6 1.5833 -6.4265 1.3068 15 7 1.5904 -5.0644 1.8576 16 6 0.5137 -4.5815 2.5088 17 8 0.5068 -3.4341 2.9016 18 6 -0.6817 -5.4672 2.7488 19 16 -2.0075 -4.4981 3.5097 20 6 -3.2419 -5.7447 3.6742 21 1 -3.0401 -6.7518 3.3403 22 6 -4.4739 -5.4321 4.2318 23 7 -4.7203 -4.2043 4.6373 24 14 -5.7823 -6.7539 4.4069 25 1 -5.2604 -8.0400 3.8790 26 1 -6.1358 -6.9136 5.8403 27 1 -6.9909 -6.3585 3.6400 28 6 1.5349 -2.0979 1.2392 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1262 1.4438 -0.0902 34 1 1.6049 1.9816 -0.8415 35 1 1.7522 1.9297 0.9316 36 1 3.9638 0.1061 1.5267 37 1 3.8454 -1.0576 0.1708 38 1 4.0401 -1.5900 3.1379 39 1 4.6393 -2.5740 1.7682 40 1 2.3659 -3.6803 -0.3537 41 1 4.0963 -3.6672 0.0645 42 1 3.5705 -5.5994 -1.3849 43 1 4.0605 -6.1502 0.2350 44 1 1.1809 -5.8232 -0.7238 45 1 2.0485 -7.3705 -0.5756 46 1 0.5888 -6.8591 1.4146 47 1 2.3105 -7.0397 1.8391 48 1 -1.0284 -5.8747 1.7992 49 1 -0.4009 -6.2840 3.4139 50 1 -5.5812 -3.9860 5.0274 51 1 1.5716 -2.5406 0.2438 52 1 0.5215 -2.1412 1.6382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670918004.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:56 Heat of formation + Delta-G solvation = -8.625694 kcal Electronic energy + Delta-G solvation = -29581.467650 eV Core-core repulsion = 25900.884225 eV Total energy + Delta-G solvation = -3680.583426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90649 -38.57782 -37.17899 -34.82952 -32.84948 -32.41952 -31.68314 -29.24597 -28.93732 -28.17542 -26.62614 -25.49198 -24.75892 -23.60004 -22.07925 -21.15018 -19.99800 -19.89986 -18.62979 -17.53011 -16.80675 -16.01130 -15.73313 -15.44295 -15.19513 -14.79860 -14.64763 -14.49255 -14.32896 -14.17639 -13.69771 -13.41418 -13.28742 -12.94513 -12.84014 -12.80558 -12.51495 -12.31119 -12.12706 -12.05091 -11.81976 -11.59288 -11.40216 -11.15070 -11.07965 -11.04399 -10.99515 -10.94659 -10.84240 -10.75349 -10.69887 -10.48666 -10.35562 -10.11881 -9.77344 -9.06434 -8.60922 -8.31613 -8.20182 -8.12942 -6.47777 -6.21014 -3.90794 2.94040 3.06448 3.21610 3.26615 3.31262 3.61539 4.08883 4.21067 4.57494 4.64214 4.65691 4.81074 4.86754 4.96839 4.99029 5.09095 5.14232 5.15297 5.16240 5.19547 5.33042 5.37999 5.42982 5.51985 5.56166 5.60771 5.64739 5.68000 5.70950 5.73682 5.80574 5.85045 5.86347 5.88688 5.93000 5.95663 5.96881 6.00345 6.06033 6.13501 6.15558 6.23274 6.28054 6.43123 6.54249 6.73438 6.93639 7.14870 7.30589 7.60314 7.64053 8.36013 8.66550 9.24690 10.86312 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003597 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.725176 B = 7783.271064 C = 9385.593445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.142 4.142 4 N -0.504 5.504 5 C 0.035 3.965 6 C -0.127 4.127 7 C -0.092 4.092 8 H 0.124 0.876 9 C 0.158 3.842 10 H 0.069 0.931 11 C -0.140 4.140 12 C -0.118 4.118 13 C -0.136 4.136 14 C 0.108 3.892 15 N -0.615 5.615 16 C 0.526 3.474 17 O -0.495 6.495 18 C -0.152 4.152 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.916 3.084 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.039 3.961 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.267 0.733 51 H 0.036 0.964 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.804 0.847 -11.618 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.199 4.199 4 N -0.229 5.229 5 C -0.093 4.093 6 C -0.166 4.166 7 C -0.111 4.111 8 H 0.142 0.858 9 C 0.055 3.945 10 H 0.087 0.913 11 C -0.178 4.178 12 C -0.155 4.155 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.351 5.351 16 C 0.315 3.685 17 O -0.370 6.370 18 C -0.303 4.303 19 S 0.169 5.831 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.087 4.087 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.077 0.923 51 H 0.054 0.946 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.422 3.011 -10.577 21.455 hybrid contribution -0.432 -2.820 -1.172 3.085 sum 17.990 0.191 -11.750 21.488 Atomic orbital electron populations 1.21844 0.93937 1.02573 1.01981 1.21751 0.96178 0.95060 0.91080 1.21814 1.00298 0.95611 1.02200 1.65554 1.05367 1.15572 1.36371 1.23041 0.90073 0.98593 0.97589 1.22502 0.97799 0.96475 0.99785 1.22565 0.93601 0.90931 1.03973 0.85798 1.21246 0.86757 0.91454 0.95087 0.91322 1.22195 1.02031 0.97013 0.96522 1.21500 0.97315 0.95821 1.00879 1.21922 0.97938 1.00978 0.96558 1.21706 1.03022 0.83396 0.93399 1.48082 1.14806 1.14892 1.57284 1.20263 0.82897 0.87859 0.77434 1.90612 1.79836 1.17068 1.49494 1.23606 0.98932 1.03108 1.04636 1.85349 1.05440 1.14175 1.78130 1.22900 1.00651 0.97298 1.47464 0.91022 1.24971 0.97733 0.96095 0.94695 1.70026 1.23506 1.18035 1.38644 0.86152 0.80659 0.80878 0.78022 1.19653 1.20568 1.20594 1.23847 1.01902 0.86095 0.96889 0.92744 0.92299 0.91471 0.94955 0.93234 0.92605 0.91648 0.90907 0.94792 0.91199 0.92020 0.90748 0.91232 0.92013 0.91973 0.91404 0.90876 0.89221 0.91670 0.89756 0.89442 0.92268 0.94643 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.04 37.16 0.34 -1.60 16 2 C 0.07 0.85 2.45 -67.72 -0.17 0.69 16 3 C -0.14 -1.50 9.05 37.15 0.34 -1.16 16 4 N -0.50 -7.05 5.20 -221.89 -1.15 -8.21 16 5 C 0.04 0.41 5.56 -2.18 -0.01 0.40 16 6 C -0.13 -1.45 6.21 -25.35 -0.16 -1.61 16 7 C -0.09 -1.28 2.22 -89.24 -0.20 -1.47 16 8 H 0.12 2.16 5.76 -52.96 -0.31 1.85 16 9 C 0.16 1.90 2.52 -67.60 -0.17 1.73 16 10 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.14 -1.41 4.82 -26.61 -0.13 -1.53 16 12 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 13 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C 0.11 1.17 6.33 -3.71 -0.02 1.14 16 15 N -0.61 -8.36 2.96 -165.23 -0.49 -8.85 16 16 C 0.53 9.36 7.31 -10.98 -0.08 9.28 16 17 O -0.49 -10.01 8.87 5.56 0.05 -9.96 16 18 C -0.15 -3.00 4.66 36.00 0.17 -2.84 16 19 S -0.06 -1.52 20.58 -107.50 -2.21 -3.74 16 20 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.04 0.59 3.68 -2.09 -0.01 0.58 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.03 0.40 7.97 -51.93 -0.41 -0.01 16 33 H 0.05 0.48 7.33 -51.93 -0.38 0.10 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 37 H 0.03 0.37 7.90 -51.93 -0.41 -0.04 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.59 6.85 -51.93 -0.36 0.23 16 40 H 0.07 0.87 5.48 -51.93 -0.28 0.59 16 41 H 0.07 0.63 7.09 -51.93 -0.37 0.26 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.01 5.86 -51.93 -0.30 0.70 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 1.56 7.27 -51.92 -0.38 1.18 16 49 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.04 0.52 4.92 -51.93 -0.26 0.27 16 52 H 0.12 2.20 5.23 -51.93 -0.27 1.93 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -31.34 392.76 -11.51 -42.86 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -9.11 Total: 2.64 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.22 Total: -11.72 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.91 Total: -42.28 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.05 Total: -9.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.34 -11.51 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670918004.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds