Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47289 * 2 1 4 4 N 1.46902 * 109.47233 * 119.99806 * 2 1 3 5 5 C 1.48720 * 111.01285 * 59.49236 * 4 2 1 6 6 C 1.54384 * 104.51799 * 158.96636 * 5 4 2 7 7 C 1.54258 * 105.14708 * 336.27036 * 6 5 4 8 8 H 1.09001 * 110.32540 * 118.84392 * 7 6 5 9 9 C 1.53001 * 110.32592 * 240.95019 * 7 6 5 10 10 H 1.09005 * 109.58364 * 302.63422 * 9 7 6 11 11 C 1.53193 * 109.58713 * 62.91414 * 9 7 6 12 12 C 1.53035 * 109.31424 * 174.42830 * 11 9 7 13 13 C 1.53046 * 109.53679 * 298.63554 * 12 11 9 14 14 C 1.53197 * 109.31220 * 61.36460 * 13 12 11 15 15 N 1.46921 * 109.59211 * 182.20775 * 9 7 6 16 16 C 1.34783 * 120.62831 * 6.57578 * 15 9 7 17 17 O 1.21277 * 120.00021 * 6.18104 * 16 15 9 18 18 C 1.50693 * 119.99891 * 186.17215 * 16 15 9 19 19 S 1.81001 * 109.47251 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00462 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00194 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99825 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99723 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46949 * 120.00241 * 24 22 20 27 27 H 1.48504 * 109.46675 * 239.99941 * 24 22 20 28 28 C 1.48559 * 111.00192 * 175.00099 * 4 2 1 29 29 H 1.09000 * 109.47082 * 300.00024 * 1 2 3 30 30 H 1.09002 * 109.46641 * 60.00157 * 1 2 3 31 31 H 1.08997 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47338 * 240.00199 * 2 1 3 33 33 H 1.08999 * 109.47050 * 300.00041 * 3 2 1 34 34 H 1.09005 * 109.46757 * 59.99316 * 3 2 1 35 35 H 1.09000 * 109.47770 * 179.97438 * 3 2 1 36 36 H 1.09003 * 110.38795 * 40.24805 * 5 4 2 37 37 H 1.08999 * 110.50964 * 277.75082 * 5 4 2 38 38 H 1.08992 * 110.32293 * 217.32547 * 6 5 4 39 39 H 1.08997 * 110.31858 * 95.21317 * 6 5 4 40 40 H 1.09003 * 109.49488 * 294.37670 * 11 9 7 41 41 H 1.09001 * 109.49742 * 54.47329 * 11 9 7 42 42 H 1.08996 * 109.46075 * 58.65193 * 12 11 9 43 43 H 1.08998 * 109.46145 * 178.61719 * 12 11 9 44 44 H 1.08995 * 109.49827 * 181.31621 * 13 12 11 45 45 H 1.09002 * 109.49827 * 301.38148 * 13 12 11 46 46 H 1.08994 * 109.58404 * 65.15623 * 14 13 12 47 47 H 1.08997 * 109.58422 * 185.43771 * 14 13 12 48 48 H 1.09002 * 109.47792 * 300.00360 * 18 16 15 49 49 H 1.09006 * 109.47268 * 60.00670 * 18 16 15 50 50 H 0.97001 * 119.99352 * 179.97438 * 23 22 20 51 51 H 1.09006 * 110.40915 * 82.18196 * 28 4 2 52 52 H 1.09003 * 110.40870 * 319.74067 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5330 -2.0972 1.2403 6 6 2.5155 -2.8198 2.1868 7 6 3.8080 -1.9787 2.1447 8 1 4.0403 -1.5917 3.1369 9 6 4.9723 -2.8196 1.6174 10 1 5.0988 -3.7024 2.2442 11 6 4.6832 -3.2505 0.1760 12 6 5.9078 -3.9712 -0.3922 13 6 7.1038 -3.0164 -0.4042 14 6 7.4204 -2.5829 1.0307 15 7 6.2047 -2.0198 1.6337 16 6 6.2195 -0.7926 2.1908 17 8 5.2434 -0.3837 2.7831 18 6 7.4491 0.0713 2.0779 19 16 7.1595 1.6462 2.9216 20 6 8.7101 2.4341 2.6397 21 1 9.4826 1.9227 2.0846 22 6 8.9388 3.7119 3.1311 23 7 7.9970 4.3353 3.8073 24 14 10.5825 4.5474 2.8316 25 1 11.4631 3.6418 2.0509 26 1 10.3672 5.8053 2.0723 27 1 11.2239 4.8590 4.1343 28 6 3.4998 -0.8178 1.1749 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.5684 -2.5404 0.2451 37 1 0.5199 -2.1388 1.6402 38 1 2.7102 -3.8311 1.8300 39 1 2.1144 -2.8470 3.1999 40 1 3.8261 -3.9238 0.1626 41 1 4.4651 -2.3710 -0.4298 42 1 6.1403 -4.8366 0.2284 43 1 5.6959 -4.3005 -1.4094 44 1 7.9696 -3.5230 -0.8305 45 1 6.8632 -2.1393 -1.0050 46 1 7.7491 -3.4463 1.6091 47 1 8.2079 -1.8294 1.0194 48 1 8.2948 -0.4380 2.5401 49 1 7.6674 0.2570 1.0262 50 1 8.1571 5.2281 4.1510 51 1 3.9652 0.1037 1.5248 52 1 3.8440 -1.0607 0.1696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670918005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -12.574008 kcal Electronic energy + Delta-G solvation = -29632.498055 eV Core-core repulsion = 25951.743418 eV Total energy + Delta-G solvation = -3680.754638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90751 -38.57777 -37.19009 -34.83030 -32.83499 -32.41899 -31.66449 -29.26599 -28.94857 -28.17810 -26.62615 -25.49521 -24.77465 -23.54087 -22.11320 -21.14453 -20.01319 -19.86011 -18.66858 -17.54923 -16.75098 -16.09864 -15.70454 -15.43298 -15.12594 -14.79877 -14.64283 -14.50172 -14.29732 -14.14970 -13.77806 -13.44054 -13.35025 -12.95483 -12.81685 -12.80884 -12.51247 -12.26784 -12.15855 -12.03559 -11.79407 -11.53612 -11.39440 -11.15723 -11.08018 -11.06081 -10.99453 -10.96081 -10.84993 -10.75741 -10.71874 -10.47956 -10.37331 -10.21565 -9.77566 -9.06493 -8.55652 -8.38200 -8.20105 -8.15102 -6.47886 -6.21031 -3.90827 2.94478 3.05593 3.21565 3.26563 3.31212 3.61114 4.07742 4.20986 4.56833 4.63770 4.66738 4.80075 4.86292 4.95773 4.98687 5.08635 5.14315 5.15649 5.16038 5.19669 5.32544 5.37828 5.42690 5.51905 5.54692 5.60889 5.63842 5.67726 5.70445 5.73354 5.80383 5.85767 5.87238 5.88776 5.91304 5.95464 5.97431 5.99716 6.05621 6.12921 6.14869 6.22309 6.26664 6.45118 6.55403 6.68091 6.93752 7.12950 7.29531 7.60282 7.64180 8.35969 8.65042 9.24669 10.86285 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003694 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.666627 B = 7577.462672 C = 9188.132387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 C -0.144 4.144 4 N -0.503 5.503 5 C 0.035 3.965 6 C -0.126 4.126 7 C -0.096 4.096 8 H 0.128 0.872 9 C 0.159 3.841 10 H 0.069 0.931 11 C -0.138 4.138 12 C -0.118 4.118 13 C -0.136 4.136 14 C 0.108 3.892 15 N -0.615 5.615 16 C 0.530 3.470 17 O -0.496 6.496 18 C -0.153 4.153 19 S -0.057 6.057 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.916 3.084 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.038 3.962 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.267 0.733 51 H 0.111 0.889 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -17.709 -9.839 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.202 4.202 4 N -0.228 5.228 5 C -0.093 4.093 6 C -0.165 4.165 7 C -0.115 4.115 8 H 0.146 0.854 9 C 0.055 3.945 10 H 0.087 0.913 11 C -0.176 4.176 12 C -0.155 4.155 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.352 5.352 16 C 0.318 3.682 17 O -0.371 6.371 18 C -0.303 4.303 19 S 0.170 5.830 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.089 4.089 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.077 0.923 51 H 0.129 0.871 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.483 -16.603 -8.414 21.362 hybrid contribution 2.565 -0.521 -1.829 3.193 sum -7.918 -17.125 -10.243 21.468 Atomic orbital electron populations 1.21847 0.94701 1.01474 1.02058 1.21760 0.95384 0.95869 0.91063 1.21814 1.01724 0.94768 1.01884 1.65533 1.07610 1.13065 1.36548 1.23070 0.99079 0.89410 0.97754 1.22499 0.95902 0.98137 0.99963 1.22595 0.91450 0.93549 1.03881 0.85424 1.21230 0.84197 0.93537 0.95526 0.91322 1.22161 0.97899 1.00783 0.96777 1.21500 0.95035 0.98095 1.00889 1.21927 0.98557 0.99952 0.96981 1.21695 0.87377 0.99289 0.93142 1.48078 1.10541 1.16843 1.59694 1.20249 0.89216 0.80526 0.78173 1.90605 1.34252 1.71953 1.40282 1.23603 0.98296 1.03072 1.05353 1.85361 1.21769 1.05930 1.69971 1.22903 1.00495 1.03720 1.41219 0.91029 1.24971 0.97739 0.96215 0.94564 1.70029 1.32593 1.13535 1.34039 0.86153 0.82228 0.79181 0.78155 1.19655 1.20582 1.20576 1.23735 0.87219 1.01161 0.96740 0.91718 0.92603 0.93069 0.94922 0.92754 0.91541 0.92222 0.94748 0.90817 0.91969 0.91194 0.91131 0.90956 0.91943 0.92003 0.90895 0.91417 0.91630 0.89243 0.89584 0.89621 0.92268 0.87128 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.04 37.16 0.34 -1.18 16 2 C 0.07 0.86 2.45 -67.71 -0.17 0.69 16 3 C -0.14 -1.95 9.16 37.16 0.34 -1.61 16 4 N -0.50 -7.08 5.20 -221.87 -1.15 -8.23 16 5 C 0.03 0.40 5.33 -2.09 -0.01 0.39 16 6 C -0.13 -1.44 6.18 -25.35 -0.16 -1.60 16 7 C -0.10 -1.34 2.23 -89.24 -0.20 -1.53 16 8 H 0.13 2.22 5.74 -52.90 -0.30 1.92 16 9 C 0.16 1.91 2.58 -67.60 -0.17 1.74 16 10 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.14 -1.38 4.83 -26.61 -0.13 -1.51 16 12 C -0.12 -1.00 5.88 -26.69 -0.16 -1.15 16 13 C -0.14 -1.23 6.08 -26.61 -0.16 -1.39 16 14 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 15 N -0.62 -8.40 2.95 -165.23 -0.49 -8.89 16 16 C 0.53 9.45 6.97 -10.99 -0.08 9.37 16 17 O -0.50 -10.11 9.29 5.56 0.05 -10.06 16 18 C -0.15 -3.02 4.52 36.00 0.16 -2.86 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.04 0.58 3.75 -2.18 -0.01 0.57 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.50 6.93 -51.93 -0.36 0.14 16 32 H 0.03 0.41 7.97 -51.92 -0.41 0.00 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.91 7.08 -51.93 -0.37 0.54 16 36 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 37 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 38 H 0.06 0.59 6.60 -51.93 -0.34 0.25 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.63 6.87 -51.93 -0.36 0.28 16 41 H 0.07 0.84 5.60 -51.93 -0.29 0.55 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.01 5.94 -51.93 -0.31 0.70 16 48 H 0.09 1.60 7.69 -51.91 -0.40 1.20 16 49 H 0.09 1.60 7.94 -51.91 -0.41 1.19 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.11 2.14 5.33 -51.93 -0.28 1.86 16 52 H 0.03 0.51 5.05 -51.93 -0.26 0.25 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -31.44 392.52 -11.50 -42.94 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -9.10 Total: 2.67 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.23 Total: -11.69 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.91 Total: -42.34 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.05 Total: -10.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.44 -11.50 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670918005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.364 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds