Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 N 1.46892 * 109.47232 * 120.00238 * 2 1 3 5 5 C 1.47884 * 111.02014 * 54.12093 * 4 2 1 6 6 C 1.54906 * 104.77927 * 146.32927 * 5 4 2 7 7 C 1.55134 * 101.68505 * 322.98247 * 6 5 4 8 8 H 1.09002 * 110.70763 * 277.07567 * 7 6 5 9 9 C 1.53001 * 110.70508 * 154.01723 * 7 6 5 10 10 H 1.08998 * 109.58781 * 284.02034 * 9 7 6 11 11 C 1.53194 * 109.58756 * 44.44874 * 9 7 6 12 12 C 1.53037 * 109.31315 * 174.42290 * 11 9 7 13 13 C 1.53039 * 109.53842 * 298.63301 * 12 11 9 14 14 C 1.53192 * 109.31270 * 61.36629 * 13 12 11 15 15 N 1.46927 * 108.77457 * 305.36478 * 14 13 12 16 16 C 1.34781 * 120.62933 * 233.59013 * 15 14 13 17 17 O 1.21282 * 119.99771 * 184.99063 * 16 15 14 18 18 C 1.50698 * 120.00280 * 4.98333 * 16 15 14 19 19 S 1.80990 * 109.47310 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00435 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99350 * 0.02562 * 20 19 18 22 22 C 1.38790 * 120.00307 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00081 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46804 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47225 * 119.99768 * 24 22 20 27 27 H 1.48500 * 109.47115 * 240.00008 * 24 22 20 28 28 C 1.47450 * 110.99840 * 174.99838 * 4 2 1 29 29 H 1.09009 * 109.46902 * 299.99784 * 1 2 3 30 30 H 1.09000 * 109.47398 * 59.99610 * 1 2 3 31 31 H 1.08996 * 109.47326 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46442 * 240.00338 * 2 1 3 33 33 H 1.09001 * 109.47214 * 60.00015 * 3 2 1 34 34 H 1.08999 * 109.47182 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47274 * 300.00466 * 3 2 1 36 36 H 1.09007 * 110.35692 * 27.51717 * 5 4 2 37 37 H 1.08999 * 110.41007 * 265.16894 * 5 4 2 38 38 H 1.09001 * 110.99047 * 204.87302 * 6 5 4 39 39 H 1.09002 * 110.99086 * 81.09187 * 6 5 4 40 40 H 1.09004 * 109.49290 * 294.37539 * 11 9 7 41 41 H 1.08997 * 109.49886 * 54.46579 * 11 9 7 42 42 H 1.09001 * 109.46162 * 178.61346 * 12 11 9 43 43 H 1.09003 * 109.44912 * 58.64433 * 12 11 9 44 44 H 1.09003 * 109.49453 * 301.41214 * 13 12 11 45 45 H 1.09002 * 109.52439 * 181.33398 * 13 12 11 46 46 H 1.09003 * 109.58621 * 185.58405 * 14 13 12 47 47 H 1.08993 * 109.70586 * 65.22288 * 14 13 12 48 48 H 1.08999 * 109.47171 * 300.00297 * 18 16 15 49 49 H 1.09007 * 109.46779 * 59.99915 * 18 16 15 50 50 H 0.97005 * 119.99555 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.88610 * 117.34009 * 28 4 2 52 52 H 1.08993 * 110.02083 * 356.22179 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4337 -2.0461 1.3067 6 6 2.5465 -2.9082 1.9533 7 6 3.8223 -2.3187 1.2965 8 1 3.9889 -2.7600 0.3138 9 6 5.0414 -2.5309 2.1963 10 1 5.0133 -1.8212 3.0231 11 6 5.0331 -3.9618 2.7434 12 6 6.3232 -4.2113 3.5278 13 6 7.5270 -4.0577 2.5954 14 6 7.5636 -2.6280 2.0466 15 7 6.2702 -2.3301 1.4163 16 6 6.2122 -1.8807 0.1470 17 8 5.1474 -1.5524 -0.3320 18 6 7.4703 -1.7859 -0.6771 19 16 7.0667 -1.1522 -2.3237 20 6 8.6717 -1.1449 -3.0508 21 1 9.5256 -1.4749 -2.4776 22 6 8.8387 -0.7151 -4.3598 23 7 7.7980 -0.3124 -5.0581 24 14 10.5402 -0.7080 -5.1308 25 1 11.5330 -1.2031 -4.1436 26 1 10.5463 -1.5906 -6.3249 27 1 10.8941 0.6761 -5.5364 28 6 3.4887 -0.8169 1.1748 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.1825 -2.4300 0.3179 37 1 0.5493 -2.0280 1.9436 38 1 2.4249 -3.9602 1.6953 39 1 2.5661 -2.7733 3.0348 40 1 4.1751 -4.0942 3.4026 41 1 4.9685 -4.6676 1.9153 42 1 6.3088 -5.2206 3.9390 43 1 6.3992 -3.4890 4.3407 44 1 7.4389 -4.7627 1.7686 45 1 8.4444 -4.2587 3.1487 46 1 8.3592 -2.5409 1.3066 47 1 7.7435 -1.9262 2.8609 48 1 8.1734 -1.1100 -0.1904 49 1 7.9204 -2.7746 -0.7681 50 1 7.9148 -0.0124 -5.9732 51 1 3.9210 -0.2719 2.0141 52 1 3.8808 -0.4247 0.2366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670918006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -18.448925 kcal Electronic energy + Delta-G solvation = -29345.841625 eV Core-core repulsion = 25664.832232 eV Total energy + Delta-G solvation = -3681.009393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74777 -38.62530 -37.21466 -34.71811 -32.86279 -32.44447 -31.70452 -29.49699 -28.73472 -28.17615 -26.60198 -25.51198 -24.79094 -23.18563 -22.12623 -20.79553 -20.34537 -19.63964 -19.03868 -17.62822 -16.75777 -16.16675 -15.60103 -15.37528 -15.24448 -14.82100 -14.52103 -14.29029 -14.11712 -14.09790 -13.73636 -13.33970 -13.25678 -13.13795 -12.91888 -12.58952 -12.50403 -12.35775 -12.11544 -12.01435 -11.88448 -11.56607 -11.41622 -11.17949 -11.09086 -11.03467 -10.98484 -10.84139 -10.76956 -10.73867 -10.65362 -10.57486 -10.53298 -10.01177 -9.79918 -9.08976 -8.78842 -8.38250 -8.23794 -7.93576 -6.50956 -6.23714 -3.93643 2.93742 3.02758 3.19894 3.25039 3.29640 3.59291 4.16702 4.18842 4.52336 4.58352 4.69470 4.84815 4.87200 5.00579 5.05093 5.11915 5.14960 5.18037 5.20894 5.31143 5.35767 5.39694 5.53122 5.57516 5.62063 5.65321 5.70548 5.75872 5.79610 5.81005 5.81783 5.85232 5.87249 5.90845 5.92900 5.97605 5.99927 6.04262 6.07708 6.12821 6.15083 6.24397 6.35615 6.45173 6.49600 6.70665 6.85050 7.26177 7.40378 7.57939 7.61943 8.33578 8.65242 9.22208 10.83711 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.003872 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.924295 B = 7229.105646 C = 9696.582616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.529 5.529 5 C 0.047 3.953 6 C -0.132 4.132 7 C -0.100 4.100 8 H 0.109 0.891 9 C 0.162 3.838 10 H 0.067 0.933 11 C -0.130 4.130 12 C -0.119 4.119 13 C -0.136 4.136 14 C 0.108 3.892 15 N -0.615 5.615 16 C 0.529 3.471 17 O -0.503 6.503 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.051 3.949 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.267 0.733 51 H 0.056 0.944 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -5.849 18.022 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.199 4.199 4 N -0.254 5.254 5 C -0.081 4.081 6 C -0.170 4.170 7 C -0.119 4.119 8 H 0.127 0.873 9 C 0.058 3.942 10 H 0.085 0.915 11 C -0.168 4.168 12 C -0.156 4.156 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.351 5.351 16 C 0.319 3.681 17 O -0.379 6.379 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.076 4.076 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.645 -4.963 17.552 20.633 hybrid contribution 2.738 -0.908 -0.563 2.939 sum -6.907 -5.871 16.990 19.257 Atomic orbital electron populations 1.21888 0.95031 1.01539 1.01759 1.21749 0.94789 0.95532 0.91624 1.21816 1.01727 0.95079 1.01321 1.63677 1.07057 1.16855 1.37860 1.22924 0.97423 0.88541 0.99215 1.22901 0.95317 0.98763 1.00065 1.22840 0.91718 0.97502 0.99855 0.87287 1.21166 0.83938 0.95832 0.93224 0.91486 1.22015 0.97877 0.96795 1.00114 1.21514 0.94579 1.01601 0.97942 1.21926 0.98604 0.97143 0.99746 1.21707 0.85713 0.95874 0.98240 1.48097 1.06595 1.67270 1.13120 1.20271 0.90891 0.76086 0.80898 1.90593 1.29464 1.46625 1.71235 1.23596 0.98243 1.04842 1.03564 1.85300 1.13264 1.83740 1.01050 1.22898 0.93700 1.50751 1.00897 0.90993 1.24972 0.97919 0.94545 0.96054 1.70027 1.29438 1.40771 1.10068 0.86143 0.82502 0.77974 0.79047 1.19621 1.20570 1.20554 1.23267 0.86338 0.94927 1.03061 0.92230 0.92480 0.92950 0.93616 0.92477 0.92175 0.92536 0.93834 0.91089 0.91419 0.91273 0.90752 0.91467 0.91858 0.91914 0.91346 0.90889 0.89297 0.91605 0.89602 0.89563 0.92267 0.92539 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.97 37.16 0.33 -1.32 16 2 C 0.07 1.00 2.24 -67.72 -0.15 0.85 16 3 C -0.14 -1.94 9.15 37.16 0.34 -1.60 16 4 N -0.53 -7.39 5.03 -223.26 -1.12 -8.51 16 5 C 0.05 0.57 5.33 -2.28 -0.01 0.56 16 6 C -0.13 -1.48 5.10 -24.60 -0.13 -1.61 16 7 C -0.10 -1.37 1.93 -88.80 -0.17 -1.54 16 8 H 0.11 1.87 5.89 -51.99 -0.31 1.56 16 9 C 0.16 1.96 2.62 -67.60 -0.18 1.78 16 10 H 0.07 0.80 7.63 -51.93 -0.40 0.40 16 11 C -0.13 -1.26 4.72 -26.61 -0.13 -1.39 16 12 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 13 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 14 C 0.11 1.17 6.35 -3.71 -0.02 1.15 16 15 N -0.61 -8.40 2.97 -165.22 -0.49 -8.89 16 16 C 0.53 9.42 7.46 -10.98 -0.08 9.34 16 17 O -0.50 -10.09 8.84 5.56 0.05 -10.04 16 18 C -0.15 -3.00 4.51 36.00 0.16 -2.84 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 24 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.05 0.77 4.94 -2.83 -0.01 0.76 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.57 6.74 -51.93 -0.35 0.22 16 32 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.92 6.82 -51.93 -0.35 0.57 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 40 H 0.07 0.63 6.86 -51.93 -0.36 0.27 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 1.60 7.74 -51.92 -0.40 1.20 16 49 H 0.09 1.62 7.90 -51.91 -0.41 1.21 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 51 H 0.06 0.87 7.50 -51.93 -0.39 0.48 16 52 H 0.10 1.83 4.15 -52.04 -0.22 1.62 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -31.17 395.68 -11.57 -42.73 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -9.30 Total: 2.60 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.17 Total: -11.12 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.88 Total: -42.58 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.17 -11.57 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670918006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.285 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds