Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46862 * 55.00856 * 3 2 1 5 5 C 1.52997 * 109.47482 * 295.00291 * 3 2 1 6 6 C 1.53006 * 109.47223 * 175.00003 * 3 2 1 7 7 N 1.46900 * 109.47303 * 185.00471 * 6 3 2 8 8 C 1.47218 * 111.00052 * 69.87359 * 7 6 3 9 9 C 1.53880 * 107.71573 * 123.33918 * 8 7 6 10 10 C 1.54372 * 104.29884 * 16.83094 * 9 8 7 11 11 H 1.09000 * 109.15974 * 89.12882 * 10 9 8 12 12 C 1.47498 * 110.99916 * 191.17997 * 7 6 3 13 13 H 1.09002 * 109.72938 * 100.18131 * 12 7 6 14 14 C 1.51007 * 108.94665 * 340.59217 * 12 7 6 15 15 C 1.53292 * 108.75418 * 185.22211 * 14 12 7 16 16 C 1.52982 * 107.94951 * 68.13480 * 15 14 12 17 17 N 1.44067 * 110.56977 * 209.32045 * 10 9 8 18 18 C 1.34780 * 116.74104 * 280.73438 * 17 10 9 19 19 O 1.21281 * 120.00230 * 359.97438 * 18 17 10 20 20 C 1.50703 * 120.00127 * 180.02562 * 18 17 10 21 21 S 1.80992 * 109.47193 * 179.97438 * 20 18 17 22 22 C 1.76200 * 100.00240 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99647 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00280 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99860 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47033 * 90.00085 * 26 24 22 28 28 H 1.48503 * 109.46803 * 209.99937 * 26 24 22 29 29 H 1.48495 * 109.47105 * 330.00205 * 26 24 22 30 30 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46593 * 299.99796 * 1 2 3 32 32 H 1.08998 * 109.46891 * 59.99794 * 1 2 3 33 33 H 1.09002 * 109.47097 * 240.00184 * 2 1 3 34 34 H 1.09006 * 109.47311 * 120.00941 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 37 37 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 38 38 H 1.09007 * 109.47135 * 305.00448 * 6 3 2 39 39 H 1.08996 * 109.46945 * 64.99955 * 6 3 2 40 40 H 1.09007 * 109.80927 * 242.88996 * 8 7 6 41 41 H 1.09003 * 109.81204 * 3.78526 * 8 7 6 42 42 H 1.08996 * 110.46441 * 135.53510 * 9 8 7 43 43 H 1.08999 * 110.46594 * 258.12791 * 9 8 7 44 44 H 1.09003 * 109.80636 * 65.33868 * 14 12 7 45 45 H 1.09001 * 109.45753 * 304.89771 * 14 12 7 46 46 H 1.09007 * 109.76355 * 308.52127 * 15 14 12 47 47 H 1.09001 * 109.76809 * 187.75435 * 15 14 12 48 48 H 1.08996 * 109.27104 * 188.44542 * 16 15 14 49 49 H 1.08995 * 109.26455 * 68.98041 * 16 15 14 50 50 H 1.09004 * 109.46911 * 299.99706 * 20 18 17 51 51 H 1.09007 * 109.47163 * 59.99607 * 20 18 17 52 52 H 0.96994 * 119.99968 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8274 0.2462 8 6 3.6660 3.4059 1.5460 9 6 4.9550 3.8750 2.2432 10 6 6.0029 3.9293 1.1109 11 1 5.9804 4.9167 0.6497 12 6 5.5112 2.8926 0.1025 13 1 5.7681 3.2114 -0.9077 14 6 6.0900 1.5208 0.3546 15 6 7.6196 1.6198 0.3336 16 6 8.0566 2.4272 1.5574 17 7 7.3229 3.6780 1.6303 18 6 7.9387 4.7072 2.2452 19 8 7.3802 5.7797 2.3389 20 6 9.3219 4.5258 2.8154 21 16 9.8719 6.0767 3.5692 22 6 11.4674 5.5914 4.1382 23 1 11.8169 4.5833 3.9706 24 6 12.2750 6.5047 4.8017 25 7 11.8489 7.7331 5.0063 26 14 13.9661 5.9899 5.4055 27 1 14.9710 6.2491 4.3433 28 1 14.3168 6.7698 6.6196 29 1 13.9550 4.5417 5.7335 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 2.0699 1.5875 -2.1491 37 1 1.9983 3.1544 -1.3070 38 1 3.8572 0.8798 1.0113 39 1 4.0030 0.9835 -0.7596 40 1 2.9992 4.2545 1.3924 41 1 3.1698 2.6509 2.1559 42 1 4.8140 4.8637 2.6798 43 1 5.2569 3.1592 3.0078 44 1 5.7581 0.8315 -0.4219 45 1 5.7608 1.1613 1.3295 46 1 7.9438 2.1250 -0.5763 47 1 8.0543 0.6212 0.3763 48 1 9.1233 2.6395 1.4860 49 1 7.8658 1.8452 2.4590 50 1 9.3031 3.7406 3.5713 51 1 10.0099 4.2459 2.0176 52 1 12.4131 8.3712 5.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672510242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -39.510222 kcal Electronic energy + Delta-G solvation = -28384.367731 eV Core-core repulsion = 24702.445052 eV Total energy + Delta-G solvation = -3681.922679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18171 -38.98256 -36.98989 -35.59569 -33.42555 -32.43364 -31.74113 -29.84523 -29.48827 -28.35823 -26.51950 -25.51377 -24.89882 -23.51360 -22.75300 -21.55844 -20.42181 -19.50558 -18.55766 -17.72826 -16.97311 -16.30045 -16.02505 -15.68651 -15.49605 -15.09924 -14.81147 -14.70693 -14.24063 -14.14715 -13.94368 -13.84572 -13.57699 -13.23509 -13.14201 -12.75221 -12.59150 -12.45193 -12.40511 -12.17240 -12.10934 -11.87525 -11.77327 -11.48540 -11.30575 -11.18189 -11.06964 -11.02830 -10.95266 -10.86808 -10.79793 -10.74684 -10.60614 -10.46975 -9.80833 -9.34506 -9.07123 -8.52103 -8.45580 -8.22476 -6.50584 -6.22108 -3.92690 2.89115 3.02988 3.21587 3.24202 3.29270 3.52790 3.77566 4.19212 4.23785 4.39539 4.55790 4.57540 4.61204 4.71736 4.78436 4.80139 4.91937 4.99660 5.05986 5.12875 5.13178 5.20225 5.23392 5.26067 5.32580 5.38561 5.40597 5.42181 5.48828 5.51761 5.60531 5.65270 5.66646 5.69184 5.73243 5.75189 5.78071 5.86305 5.88442 5.90608 5.96830 6.09740 6.11234 6.15273 6.16992 6.20606 6.68685 6.84141 6.92141 7.47606 7.58942 8.34528 8.55720 9.23115 10.85294 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002143 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.291472 B =13060.561120 C =13487.324574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.089 4.089 4 H 0.069 0.931 5 C -0.139 4.139 6 C 0.054 3.946 7 N -0.520 5.520 8 C 0.046 3.954 9 C -0.152 4.152 10 C 0.152 3.848 11 H 0.093 0.907 12 C 0.076 3.924 13 H 0.091 0.909 14 C -0.142 4.142 15 C -0.129 4.129 16 C 0.110 3.890 17 N -0.604 5.604 18 C 0.525 3.475 19 O -0.511 6.511 20 C -0.151 4.151 21 S -0.061 6.061 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -18.099 -11.961 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.108 4.108 4 H 0.088 0.912 5 C -0.196 4.196 6 C -0.074 4.074 7 N -0.243 5.243 8 C -0.082 4.082 9 C -0.191 4.191 10 C 0.047 3.953 11 H 0.111 0.889 12 C -0.033 4.033 13 H 0.109 0.891 14 C -0.180 4.180 15 C -0.168 4.168 16 C -0.013 4.013 17 N -0.340 5.340 18 C 0.312 3.688 19 O -0.385 6.385 20 C -0.301 4.301 21 S 0.165 5.835 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.696 -16.072 -12.167 28.183 hybrid contribution 2.164 -2.149 1.026 3.217 sum -17.532 -18.221 -11.141 27.631 Atomic orbital electron populations 1.21801 0.95782 1.01403 1.01992 1.21552 0.96049 0.96392 1.01779 1.21192 0.94517 0.95738 0.99339 0.91243 1.21752 1.00170 1.01572 0.96085 1.22417 0.95074 0.89097 1.00766 1.63479 1.10304 1.18719 1.31773 1.22698 0.97254 0.99557 0.88713 1.22999 0.94659 1.03032 0.98443 1.20769 0.81761 0.99408 0.93371 0.88892 1.21872 0.87229 0.94414 0.99754 0.89141 1.21888 0.96082 0.97621 1.02439 1.21840 0.95751 1.00619 0.98570 1.21348 0.96863 0.84939 0.98135 1.46904 1.15958 1.12112 1.58976 1.20462 0.87449 0.83379 0.77466 1.90691 1.66296 1.25596 1.55880 1.23598 0.95331 1.07818 1.03378 1.85402 1.18671 1.07790 1.71588 1.22856 1.01774 1.00455 1.43250 0.90973 1.24991 0.98801 0.94514 0.95277 1.70016 1.37110 1.03669 1.39435 0.86175 0.82406 0.78618 0.78340 1.20265 1.20746 1.19712 0.92983 0.92836 0.92389 0.92034 0.92309 0.93321 0.93305 0.91436 0.94421 0.90603 0.90309 0.92674 0.89706 0.91543 0.90688 0.91540 0.90866 0.90223 0.89617 0.92278 0.89342 0.89215 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.73 5.40 -26.73 -0.14 -0.88 16 3 C -0.09 -0.63 2.36 -90.62 -0.21 -0.84 16 4 H 0.07 0.54 7.04 -51.93 -0.37 0.18 16 5 C -0.14 -1.01 8.84 37.16 0.33 -0.68 16 6 C 0.05 0.42 2.86 -3.82 -0.01 0.41 16 7 N -0.52 -4.90 4.59 -226.68 -1.04 -5.94 16 8 C 0.05 0.46 6.15 -3.19 -0.02 0.44 16 9 C -0.15 -1.89 6.27 -25.55 -0.16 -2.05 16 10 C 0.15 1.99 2.69 -68.63 -0.18 1.81 16 11 H 0.09 1.43 7.50 -51.93 -0.39 1.04 16 12 C 0.08 0.77 3.18 -68.52 -0.22 0.55 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 14 C -0.14 -1.19 3.94 -27.58 -0.11 -1.29 16 15 C -0.13 -1.09 6.13 -26.59 -0.16 -1.26 16 16 C 0.11 1.23 5.70 -4.75 -0.03 1.20 16 17 N -0.60 -8.62 2.84 -168.22 -0.48 -9.09 16 18 C 0.52 9.95 7.41 -10.98 -0.08 9.87 16 19 O -0.51 -11.56 15.13 5.56 0.08 -11.48 16 20 C -0.15 -3.05 4.59 36.01 0.17 -2.89 16 21 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 22 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 23 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 26 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.33 6.57 -51.93 -0.34 -0.02 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 38 H 0.04 0.30 6.70 -51.93 -0.35 -0.05 16 39 H 0.08 0.56 6.64 -51.93 -0.34 0.22 16 40 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.05 0.51 6.93 -51.93 -0.36 0.15 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 44 H 0.07 0.54 6.42 -51.93 -0.33 0.20 16 45 H 0.07 0.60 7.10 -51.93 -0.37 0.23 16 46 H 0.07 0.64 8.12 -51.92 -0.42 0.21 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.97 6.07 -51.93 -0.32 0.66 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.67 8.02 -51.91 -0.42 1.26 16 51 H 0.09 1.68 7.19 -51.91 -0.37 1.30 16 52 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -32.48 401.67 -11.48 -43.95 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.31 Total: -1.50 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.28 Total: -9.05 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.78 Total: -40.44 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.48 -11.48 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.441 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds