Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46862 * 55.00856 * 3 2 1 5 5 C 1.52997 * 109.47482 * 295.00291 * 3 2 1 6 6 C 1.53006 * 109.47223 * 175.00003 * 3 2 1 7 7 N 1.46900 * 109.47303 * 185.00471 * 6 3 2 8 8 C 1.47218 * 111.00052 * 69.87359 * 7 6 3 9 9 C 1.53880 * 107.71573 * 123.33918 * 8 7 6 10 10 C 1.54372 * 104.29884 * 16.83094 * 9 8 7 11 11 H 1.09000 * 109.15974 * 89.12882 * 10 9 8 12 12 C 1.47498 * 110.99916 * 191.17997 * 7 6 3 13 13 H 1.09002 * 109.72938 * 100.18131 * 12 7 6 14 14 C 1.51007 * 108.94665 * 340.59217 * 12 7 6 15 15 C 1.53292 * 108.75418 * 185.22211 * 14 12 7 16 16 C 1.52982 * 107.94951 * 68.13480 * 15 14 12 17 17 N 1.44067 * 110.56977 * 209.32045 * 10 9 8 18 18 C 1.34780 * 116.74104 * 280.73438 * 17 10 9 19 19 O 1.21281 * 120.00230 * 359.97438 * 18 17 10 20 20 C 1.50703 * 120.00127 * 180.02562 * 18 17 10 21 21 S 1.80992 * 109.47193 * 179.97438 * 20 18 17 22 22 C 1.76200 * 100.00240 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99647 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00280 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99860 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47033 * 90.00085 * 26 24 22 28 28 H 1.48503 * 109.46803 * 209.99937 * 26 24 22 29 29 H 1.48495 * 109.47105 * 330.00205 * 26 24 22 30 30 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46593 * 299.99796 * 1 2 3 32 32 H 1.08998 * 109.46891 * 59.99794 * 1 2 3 33 33 H 1.09002 * 109.47097 * 240.00184 * 2 1 3 34 34 H 1.09006 * 109.47311 * 120.00941 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 37 37 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 38 38 H 1.09007 * 109.47135 * 305.00448 * 6 3 2 39 39 H 1.08996 * 109.46945 * 64.99955 * 6 3 2 40 40 H 1.09007 * 109.80927 * 242.88996 * 8 7 6 41 41 H 1.09003 * 109.81204 * 3.78526 * 8 7 6 42 42 H 1.08996 * 110.46441 * 135.53510 * 9 8 7 43 43 H 1.08999 * 110.46594 * 258.12791 * 9 8 7 44 44 H 1.09003 * 109.80636 * 65.33868 * 14 12 7 45 45 H 1.09001 * 109.45753 * 304.89771 * 14 12 7 46 46 H 1.09007 * 109.76355 * 308.52127 * 15 14 12 47 47 H 1.09001 * 109.76809 * 187.75435 * 15 14 12 48 48 H 1.08996 * 109.27104 * 188.44542 * 16 15 14 49 49 H 1.08995 * 109.26455 * 68.98041 * 16 15 14 50 50 H 1.09004 * 109.46911 * 299.99706 * 20 18 17 51 51 H 1.09007 * 109.47163 * 59.99607 * 20 18 17 52 52 H 0.96994 * 119.99968 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8274 0.2462 8 6 3.6660 3.4059 1.5460 9 6 4.9550 3.8750 2.2432 10 6 6.0029 3.9293 1.1109 11 1 5.9804 4.9167 0.6497 12 6 5.5112 2.8926 0.1025 13 1 5.7681 3.2114 -0.9077 14 6 6.0900 1.5208 0.3546 15 6 7.6196 1.6198 0.3336 16 6 8.0566 2.4272 1.5574 17 7 7.3229 3.6780 1.6303 18 6 7.9387 4.7072 2.2452 19 8 7.3802 5.7797 2.3389 20 6 9.3219 4.5258 2.8154 21 16 9.8719 6.0767 3.5692 22 6 11.4674 5.5914 4.1382 23 1 11.8169 4.5833 3.9706 24 6 12.2750 6.5047 4.8017 25 7 11.8489 7.7331 5.0063 26 14 13.9661 5.9899 5.4055 27 1 14.9710 6.2491 4.3433 28 1 14.3168 6.7698 6.6196 29 1 13.9550 4.5417 5.7335 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 0.5489 2.1253 -1.3968 36 1 2.0699 1.5875 -2.1491 37 1 1.9983 3.1544 -1.3070 38 1 3.8572 0.8798 1.0113 39 1 4.0030 0.9835 -0.7596 40 1 2.9992 4.2545 1.3924 41 1 3.1698 2.6509 2.1559 42 1 4.8140 4.8637 2.6798 43 1 5.2569 3.1592 3.0078 44 1 5.7581 0.8315 -0.4219 45 1 5.7608 1.1613 1.3295 46 1 7.9438 2.1250 -0.5763 47 1 8.0543 0.6212 0.3763 48 1 9.1233 2.6395 1.4860 49 1 7.8658 1.8452 2.4590 50 1 9.3031 3.7406 3.5713 51 1 10.0099 4.2459 2.0176 52 1 12.4131 8.3712 5.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672510242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -59.000810 kcal Electronic energy + Delta-G solvation = -28385.212906 eV Core-core repulsion = 24702.445052 eV Total energy + Delta-G solvation = -3682.767855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21574 -40.16171 -37.86227 -36.49076 -34.59965 -34.37875 -32.70726 -30.86694 -30.34914 -29.44439 -27.67989 -27.19575 -25.82023 -24.17272 -23.64475 -22.52175 -21.37263 -20.22066 -19.90750 -19.31481 -18.38123 -17.29218 -16.96596 -16.88704 -16.85198 -16.51547 -15.95519 -15.77512 -15.40148 -15.17737 -14.90432 -14.66994 -14.52130 -14.42935 -14.27101 -14.16334 -13.57454 -13.46993 -13.23876 -13.15051 -13.02197 -12.90360 -12.85797 -12.72352 -12.60038 -12.49179 -12.31747 -12.05990 -11.92842 -11.72450 -11.66866 -11.53449 -11.36103 -11.32441 -11.23788 -11.15022 -10.85232 -10.27342 -9.70847 -9.23642 -8.68850 -8.35382 -6.14032 1.23968 1.41932 1.44664 1.51602 1.55476 2.02466 2.26326 2.94148 2.98723 3.20434 3.39960 3.54950 3.74753 3.80815 3.89977 3.94989 4.00193 4.08069 4.10643 4.19332 4.23276 4.24695 4.37523 4.40485 4.47708 4.52168 4.60262 4.64430 4.68592 4.73385 4.82099 4.84074 4.87217 4.91123 4.95900 4.98870 5.05027 5.09944 5.14644 5.20362 5.25129 5.27876 5.33011 5.36919 5.40759 5.56574 5.63113 5.64596 5.99862 6.10322 6.18764 6.22308 7.05650 7.11441 8.73859 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002143 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.291472 B =13060.561120 C =13487.324574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.086 4.086 4 H 0.060 0.940 5 C -0.135 4.135 6 C 0.056 3.944 7 N -0.524 5.524 8 C 0.056 3.944 9 C -0.148 4.148 10 C 0.148 3.852 11 H 0.062 0.938 12 C 0.084 3.916 13 H 0.091 0.909 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.097 3.903 17 N -0.586 5.586 18 C 0.522 3.478 19 O -0.559 6.559 20 C -0.123 4.123 21 S -0.153 6.153 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.999 3.001 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.257 1.257 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.106 0.894 51 H 0.109 0.891 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 -21.967 -12.903 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.079 0.921 5 C -0.192 4.192 6 C -0.071 4.071 7 N -0.247 5.247 8 C -0.072 4.072 9 C -0.187 4.187 10 C 0.043 3.957 11 H 0.080 0.920 12 C -0.025 4.025 13 H 0.109 0.891 14 C -0.174 4.174 15 C -0.159 4.159 16 C -0.025 4.025 17 N -0.319 5.319 18 C 0.309 3.691 19 O -0.437 6.437 20 C -0.274 4.274 21 S 0.074 5.926 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.821 3.179 27 H -0.193 1.193 28 H -0.203 1.203 29 H -0.181 1.181 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.127 0.873 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.124 0.876 51 H 0.128 0.872 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.335 -19.999 -13.137 30.764 hybrid contribution 1.935 -0.986 1.256 2.508 sum -17.401 -20.986 -11.881 29.738 Atomic orbital electron populations 1.21803 0.95652 1.01767 1.01807 1.21517 0.96137 0.95509 1.02201 1.21159 0.94116 0.96401 0.98789 0.92124 1.21707 1.00459 1.00629 0.96427 1.22481 0.95398 0.87854 1.01414 1.63495 1.09863 1.20207 1.31122 1.22586 0.95724 0.99884 0.89023 1.22901 0.95990 1.01531 0.98317 1.20835 0.81270 0.99307 0.94328 0.92006 1.21791 0.87628 0.94666 0.98401 0.89149 1.21872 0.95883 0.96433 1.03204 1.21840 0.95802 1.01436 0.96834 1.21712 0.96579 0.83742 1.00461 1.46897 1.16139 1.12034 1.56880 1.20337 0.87070 0.83807 0.77866 1.90676 1.67176 1.27752 1.58103 1.23414 0.96407 1.03731 1.03820 1.85610 1.19928 1.14012 1.73028 1.23189 1.01734 1.01039 1.43317 0.89845 1.26146 1.03522 0.94338 0.95204 1.70186 1.39011 1.05140 1.40439 0.84945 0.76343 0.78853 0.77788 1.19260 1.20347 1.18085 0.92361 0.93216 0.92421 0.91401 0.92045 0.92908 0.92858 0.93065 0.93952 0.89498 0.90695 0.91294 0.92491 0.91673 0.88339 0.91613 0.90867 0.87347 0.89560 0.90984 0.87573 0.87249 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.12 -1.12 5.40 30.59 0.17 -0.95 16 3 C -0.09 -1.03 2.36 -10.79 -0.03 -1.06 16 4 H 0.06 0.85 7.04 -2.39 -0.02 0.83 16 5 C -0.13 -1.75 8.84 71.98 0.64 -1.11 16 6 C 0.06 0.71 2.86 86.31 0.25 0.95 16 7 N -0.52 -9.07 4.59 -871.08 -4.00 -13.07 16 8 C 0.06 1.09 6.15 86.54 0.53 1.62 16 9 C -0.15 -3.77 6.27 31.36 0.20 -3.58 16 10 C 0.15 3.90 2.69 45.83 0.12 4.02 16 11 H 0.06 2.03 7.50 -2.39 -0.02 2.01 16 12 C 0.08 1.55 3.18 44.07 0.14 1.69 16 13 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 14 C -0.14 -1.79 3.94 30.04 0.12 -1.67 16 15 C -0.12 -1.60 6.13 30.69 0.19 -1.41 16 16 C 0.10 1.92 5.70 86.62 0.49 2.41 16 17 N -0.59 -16.48 2.84 -804.52 -2.28 -18.76 16 18 C 0.52 20.24 7.41 87.66 0.65 20.89 16 19 O -0.56 -26.80 15.13 -3.03 -0.05 -26.85 16 20 C -0.12 -4.98 4.59 71.24 0.33 -4.65 16 21 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 22 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 23 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 24 C 0.01 0.72 5.49 84.86 0.47 1.19 16 25 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 26 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.05 0.63 6.57 -2.39 -0.02 0.61 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.83 7.75 -2.38 -0.02 0.82 16 38 H 0.04 0.53 6.70 -2.38 -0.02 0.51 16 39 H 0.09 0.95 6.64 -2.39 -0.02 0.93 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.07 1.16 6.93 -2.39 -0.02 1.15 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 44 H 0.10 0.93 6.42 -2.39 -0.02 0.92 16 45 H 0.07 0.94 7.10 -2.39 -0.02 0.92 16 46 H 0.07 1.02 8.12 -2.38 -0.02 1.00 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.73 6.07 -2.39 -0.01 1.72 16 49 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.11 3.91 8.02 -2.39 -0.02 3.89 16 51 H 0.11 3.99 7.19 -2.39 -0.02 3.97 16 52 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.08 401.67 1.30 -72.78 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.88 Total: 19.07 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 5.60 Total: -12.97 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -6.00 Total: -87.85 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -74.08 1.30 -72.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.780 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds