Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47707 * 2 1 4 4 H 1.09003 * 109.46691 * 54.99835 * 3 2 1 5 5 C 1.53000 * 109.47440 * 295.00258 * 3 2 1 6 6 C 1.53001 * 109.47134 * 174.99805 * 3 2 1 7 7 N 1.46896 * 109.47121 * 294.98077 * 6 3 2 8 8 C 1.49257 * 111.00200 * 299.49817 * 7 6 3 9 9 C 1.55131 * 106.79038 * 214.71974 * 8 7 6 10 10 C 1.52735 * 103.97167 * 356.88252 * 9 8 7 11 11 H 1.09005 * 111.23950 * 271.21202 * 10 9 8 12 12 C 1.46344 * 110.99641 * 184.28532 * 7 6 3 13 13 H 1.08994 * 109.71806 * 47.18048 * 12 7 6 14 14 C 1.51321 * 118.14406 * 280.45234 * 12 7 6 15 15 C 1.53848 * 107.27524 * 179.39562 * 14 12 7 16 16 C 1.52710 * 111.61427 * 57.28116 * 15 14 12 17 17 N 1.45502 * 117.30847 * 142.97417 * 10 9 8 18 18 C 1.34768 * 122.24901 * 7.73183 * 17 10 9 19 19 O 1.21280 * 120.00237 * 355.24331 * 18 17 10 20 20 C 1.50707 * 119.99935 * 175.24900 * 18 17 10 21 21 S 1.80996 * 109.47256 * 179.97438 * 20 18 17 22 22 C 1.76197 * 99.99917 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00288 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00096 * 179.72342 * 22 21 20 25 25 N 1.31638 * 119.99757 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00424 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47134 * 59.99924 * 26 24 22 28 28 H 1.48495 * 109.47367 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47002 * 300.00304 * 26 24 22 30 30 H 1.09007 * 109.47155 * 300.00129 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99459 * 1 2 3 32 32 H 1.08997 * 109.47723 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46641 * 239.99905 * 2 1 3 34 34 H 1.09004 * 109.46778 * 120.00541 * 2 1 3 35 35 H 1.09000 * 109.46906 * 305.80061 * 5 3 2 36 36 H 1.09005 * 109.47065 * 65.79031 * 5 3 2 37 37 H 1.08994 * 109.47248 * 185.79727 * 5 3 2 38 38 H 1.09007 * 109.46884 * 174.98319 * 6 3 2 39 39 H 1.08994 * 109.47235 * 54.98684 * 6 3 2 40 40 H 1.08995 * 109.99820 * 334.04957 * 8 7 6 41 41 H 1.08996 * 109.99421 * 95.34768 * 8 7 6 42 42 H 1.08994 * 110.55255 * 115.67049 * 9 8 7 43 43 H 1.09000 * 110.55081 * 238.35067 * 9 8 7 44 44 H 1.09005 * 109.89584 * 59.95823 * 14 12 7 45 45 H 1.09000 * 109.96021 * 298.87451 * 14 12 7 46 46 H 1.08996 * 109.05146 * 296.72737 * 15 14 12 47 47 H 1.08997 * 108.99120 * 177.78942 * 15 14 12 48 48 H 1.09000 * 109.16999 * 191.21569 * 16 15 14 49 49 H 1.08999 * 109.12850 * 71.97669 * 16 15 14 50 50 H 1.09001 * 109.47033 * 59.99437 * 20 18 17 51 51 H 1.09002 * 109.46967 * 299.99870 * 20 18 17 52 52 H 0.97004 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4441 0.1258 7 7 3.9490 0.8965 1.4336 8 6 3.3863 1.7196 2.5443 9 6 4.4321 1.7012 3.6899 10 6 5.5295 0.7734 3.1726 11 1 5.3284 -0.2639 3.4405 12 6 5.3969 0.9759 1.6307 13 1 5.7508 1.9706 1.3599 14 6 6.2657 -0.0722 0.9701 15 6 7.7264 0.2550 1.3254 16 6 7.9417 0.2977 2.8367 17 7 6.9048 1.1202 3.4972 18 6 7.2130 2.1198 4.3470 19 8 6.3345 2.8206 4.8030 20 6 8.6494 2.3669 4.7304 21 16 8.7362 3.7662 5.8750 22 6 10.4755 3.8297 6.1494 23 1 11.1259 3.1211 5.6583 24 6 11.0104 4.7944 6.9919 25 7 10.2183 5.6615 7.5863 26 14 12.8545 4.8622 7.2823 27 1 13.5510 5.0880 5.9904 28 1 13.1682 5.9740 8.2153 29 1 13.3102 3.5779 7.8724 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.9826 1.5311 -2.1516 36 1 0.5499 2.2175 -1.3489 37 1 2.0851 3.1183 -1.3527 38 1 3.9357 2.4652 0.0364 39 1 3.9954 0.8307 -0.6656 40 1 3.2235 2.7424 2.2048 41 1 2.4470 1.2876 2.8894 42 1 4.8258 2.7024 3.8647 43 1 3.9927 1.2992 4.6028 44 1 6.1305 -0.0385 -0.1110 45 1 6.0054 -1.0619 1.3456 46 1 7.9871 1.2246 0.9013 47 1 8.3755 -0.5075 0.8950 48 1 8.9231 0.7230 3.0465 49 1 7.8993 -0.7170 3.2323 50 1 9.2305 2.5926 3.8363 51 1 9.0550 1.4772 5.2122 52 1 10.5921 6.3355 8.1753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672510244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -35.156054 kcal Electronic energy + Delta-G solvation = -28459.480410 eV Core-core repulsion = 24777.746542 eV Total energy + Delta-G solvation = -3681.733869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86225 -38.67382 -37.03971 -35.57218 -32.98589 -32.43650 -31.68059 -29.95308 -29.15520 -28.61170 -25.83486 -25.52540 -24.78938 -23.55869 -22.07112 -21.77303 -20.54056 -19.73217 -18.92732 -17.52580 -16.40218 -16.25005 -15.59666 -15.55700 -15.40438 -14.86289 -14.81263 -14.73696 -14.47025 -14.13868 -13.92648 -13.68493 -13.61672 -13.24286 -12.95486 -12.65769 -12.59237 -12.45905 -12.24073 -12.16783 -11.98041 -11.85607 -11.59402 -11.44210 -11.21029 -11.04990 -11.04386 -11.04101 -10.88904 -10.79566 -10.75686 -10.71038 -10.66414 -10.52638 -9.82469 -9.06991 -8.90463 -8.58758 -8.39055 -8.24528 -6.51180 -6.22627 -3.93269 2.87350 3.00868 3.22422 3.23777 3.27901 3.53062 3.79639 4.19240 4.30023 4.48877 4.59689 4.69693 4.73105 4.81519 4.87824 4.98636 5.06585 5.12376 5.13593 5.17040 5.19510 5.25624 5.29244 5.31076 5.33801 5.39843 5.47395 5.49941 5.53381 5.59633 5.68916 5.71524 5.73779 5.78178 5.79789 5.82243 5.86475 5.86619 5.91692 5.94779 6.10568 6.12428 6.15940 6.22214 6.23705 6.33494 6.55585 6.92049 6.98638 7.57812 7.61131 8.33798 8.57579 9.22528 10.84681 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.002303 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.412313 B =12153.072975 C =12687.494079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.148 4.148 6 C 0.051 3.949 7 N -0.501 5.501 8 C 0.036 3.964 9 C -0.146 4.146 10 C 0.147 3.853 11 H 0.081 0.919 12 C 0.044 3.956 13 H 0.051 0.949 14 C -0.098 4.098 15 C -0.133 4.133 16 C 0.110 3.890 17 N -0.613 5.613 18 C 0.542 3.458 19 O -0.510 6.510 20 C -0.152 4.152 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 -13.668 -17.893 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.206 4.206 6 C -0.078 4.078 7 N -0.225 5.225 8 C -0.092 4.092 9 C -0.184 4.184 10 C 0.042 3.958 11 H 0.099 0.901 12 C -0.066 4.066 13 H 0.069 0.931 14 C -0.136 4.136 15 C -0.172 4.172 16 C -0.013 4.013 17 N -0.349 5.349 18 C 0.331 3.669 19 O -0.385 6.385 20 C -0.302 4.302 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.212 -12.989 -17.060 26.290 hybrid contribution 2.552 0.024 -0.532 2.607 sum -12.661 -12.965 -17.592 25.256 Atomic orbital electron populations 1.21836 0.96519 1.01262 1.01512 1.21477 0.94919 0.95883 1.02609 1.21195 0.94456 0.97034 0.98211 0.91067 1.21856 1.01374 1.00218 0.97127 1.22355 0.95716 0.97843 0.91846 1.64636 1.06527 1.49275 1.02058 1.23380 0.98652 0.95834 0.91298 1.22913 0.94023 1.04306 0.97155 1.21645 0.82084 0.98921 0.93106 0.90065 1.22734 0.88662 0.98529 0.96648 0.93139 1.21225 0.93389 0.98824 1.00171 1.21925 0.96786 1.02725 0.95729 1.21710 0.91916 0.95517 0.92168 1.47893 1.06205 1.34692 1.46125 1.20278 0.91048 0.78540 0.77065 1.90550 1.48732 1.46134 1.53119 1.23585 0.94942 1.06599 1.05112 1.85368 1.10046 1.33786 1.54116 1.22816 0.92034 1.20130 1.33409 0.91019 1.24992 0.99104 0.94603 0.94874 1.70011 1.35239 1.16689 1.28332 0.86229 0.83131 0.77914 0.78266 1.19952 1.20806 1.19921 0.92958 0.92969 0.93082 0.92568 0.90624 0.92725 0.92354 0.92911 0.94787 0.90814 0.93423 0.90404 0.86023 0.90915 0.91814 0.90912 0.91539 0.90225 0.89275 0.91452 0.89429 0.89270 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.11 -0.86 5.35 -26.74 -0.14 -1.01 16 3 C -0.09 -0.73 2.27 -90.62 -0.21 -0.93 16 4 H 0.07 0.63 6.91 -51.93 -0.36 0.27 16 5 C -0.15 -1.04 8.80 37.16 0.33 -0.72 16 6 C 0.05 0.47 4.18 -3.83 -0.02 0.45 16 7 N -0.50 -5.23 4.68 -222.71 -1.04 -6.28 16 8 C 0.04 0.41 5.40 -1.38 -0.01 0.40 16 9 C -0.15 -2.04 5.66 -25.74 -0.15 -2.18 16 10 C 0.15 1.92 3.25 -66.95 -0.22 1.70 16 11 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 12 C 0.04 0.50 1.69 -67.21 -0.11 0.39 16 13 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 14 C -0.10 -0.89 5.94 -27.14 -0.16 -1.05 16 15 C -0.13 -1.18 5.94 -26.44 -0.16 -1.33 16 16 C 0.11 1.19 6.31 -3.42 -0.02 1.16 16 17 N -0.61 -8.78 2.91 -164.14 -0.48 -9.26 16 18 C 0.54 10.15 7.74 -10.99 -0.09 10.06 16 19 O -0.51 -11.12 12.46 5.56 0.07 -11.05 16 20 C -0.15 -3.06 4.64 36.01 0.17 -2.89 16 21 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 23 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 26 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.05 0.34 6.70 -51.93 -0.35 -0.01 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.68 7.62 -51.93 -0.40 0.29 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.35 7.96 -51.93 -0.41 -0.07 16 39 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.05 0.55 7.59 -51.93 -0.39 0.16 16 41 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.12 2.11 5.21 -52.14 -0.27 1.84 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 45 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.97 6.20 -51.93 -0.32 0.65 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.64 7.57 -51.91 -0.39 1.25 16 51 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 52 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -31.87 404.90 -11.60 -43.47 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -9.53 Total: -0.58 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.22 Total: -9.54 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.79 Total: -40.88 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.87 -11.60 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.318 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds