Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47707 * 2 1 4 4 H 1.09003 * 109.46691 * 54.99835 * 3 2 1 5 5 C 1.53000 * 109.47440 * 295.00258 * 3 2 1 6 6 C 1.53001 * 109.47134 * 174.99805 * 3 2 1 7 7 N 1.46896 * 109.47121 * 294.98077 * 6 3 2 8 8 C 1.49257 * 111.00200 * 299.49817 * 7 6 3 9 9 C 1.55131 * 106.79038 * 214.71974 * 8 7 6 10 10 C 1.52735 * 103.97167 * 356.88252 * 9 8 7 11 11 H 1.09005 * 111.23950 * 271.21202 * 10 9 8 12 12 C 1.46344 * 110.99641 * 184.28532 * 7 6 3 13 13 H 1.08994 * 109.71806 * 47.18048 * 12 7 6 14 14 C 1.51321 * 118.14406 * 280.45234 * 12 7 6 15 15 C 1.53848 * 107.27524 * 179.39562 * 14 12 7 16 16 C 1.52710 * 111.61427 * 57.28116 * 15 14 12 17 17 N 1.45502 * 117.30847 * 142.97417 * 10 9 8 18 18 C 1.34768 * 122.24901 * 7.73183 * 17 10 9 19 19 O 1.21280 * 120.00237 * 355.24331 * 18 17 10 20 20 C 1.50707 * 119.99935 * 175.24900 * 18 17 10 21 21 S 1.80996 * 109.47256 * 179.97438 * 20 18 17 22 22 C 1.76197 * 99.99917 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00288 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00096 * 179.72342 * 22 21 20 25 25 N 1.31638 * 119.99757 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00424 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47134 * 59.99924 * 26 24 22 28 28 H 1.48495 * 109.47367 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47002 * 300.00304 * 26 24 22 30 30 H 1.09007 * 109.47155 * 300.00129 * 1 2 3 31 31 H 1.09004 * 109.46778 * 59.99459 * 1 2 3 32 32 H 1.08997 * 109.47723 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46641 * 239.99905 * 2 1 3 34 34 H 1.09004 * 109.46778 * 120.00541 * 2 1 3 35 35 H 1.09000 * 109.46906 * 305.80061 * 5 3 2 36 36 H 1.09005 * 109.47065 * 65.79031 * 5 3 2 37 37 H 1.08994 * 109.47248 * 185.79727 * 5 3 2 38 38 H 1.09007 * 109.46884 * 174.98319 * 6 3 2 39 39 H 1.08994 * 109.47235 * 54.98684 * 6 3 2 40 40 H 1.08995 * 109.99820 * 334.04957 * 8 7 6 41 41 H 1.08996 * 109.99421 * 95.34768 * 8 7 6 42 42 H 1.08994 * 110.55255 * 115.67049 * 9 8 7 43 43 H 1.09000 * 110.55081 * 238.35067 * 9 8 7 44 44 H 1.09005 * 109.89584 * 59.95823 * 14 12 7 45 45 H 1.09000 * 109.96021 * 298.87451 * 14 12 7 46 46 H 1.08996 * 109.05146 * 296.72737 * 15 14 12 47 47 H 1.08997 * 108.99120 * 177.78942 * 15 14 12 48 48 H 1.09000 * 109.16999 * 191.21569 * 16 15 14 49 49 H 1.08999 * 109.12850 * 71.97669 * 16 15 14 50 50 H 1.09001 * 109.47033 * 59.99437 * 20 18 17 51 51 H 1.09002 * 109.46967 * 299.99870 * 20 18 17 52 52 H 0.97004 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4441 0.1258 7 7 3.9490 0.8965 1.4336 8 6 3.3863 1.7196 2.5443 9 6 4.4321 1.7012 3.6899 10 6 5.5295 0.7734 3.1726 11 1 5.3284 -0.2639 3.4405 12 6 5.3969 0.9759 1.6307 13 1 5.7508 1.9706 1.3599 14 6 6.2657 -0.0722 0.9701 15 6 7.7264 0.2550 1.3254 16 6 7.9417 0.2977 2.8367 17 7 6.9048 1.1202 3.4972 18 6 7.2130 2.1198 4.3470 19 8 6.3345 2.8206 4.8030 20 6 8.6494 2.3669 4.7304 21 16 8.7362 3.7662 5.8750 22 6 10.4755 3.8297 6.1494 23 1 11.1259 3.1211 5.6583 24 6 11.0104 4.7944 6.9919 25 7 10.2183 5.6615 7.5863 26 14 12.8545 4.8622 7.2823 27 1 13.5510 5.0880 5.9904 28 1 13.1682 5.9740 8.2153 29 1 13.3102 3.5779 7.8724 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.9826 1.5311 -2.1516 36 1 0.5499 2.2175 -1.3489 37 1 2.0851 3.1183 -1.3527 38 1 3.9357 2.4652 0.0364 39 1 3.9954 0.8307 -0.6656 40 1 3.2235 2.7424 2.2048 41 1 2.4470 1.2876 2.8894 42 1 4.8258 2.7024 3.8647 43 1 3.9927 1.2992 4.6028 44 1 6.1305 -0.0385 -0.1110 45 1 6.0054 -1.0619 1.3456 46 1 7.9871 1.2246 0.9013 47 1 8.3755 -0.5075 0.8950 48 1 8.9231 0.7230 3.0465 49 1 7.8993 -0.7170 3.2323 50 1 9.2305 2.5926 3.8363 51 1 9.0550 1.4772 5.2122 52 1 10.5921 6.3355 8.1753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672510244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -53.868863 kcal Electronic energy + Delta-G solvation = -28460.291859 eV Core-core repulsion = 24777.746542 eV Total energy + Delta-G solvation = -3682.545317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95402 -39.83803 -37.99459 -36.45557 -34.59628 -33.99853 -32.69160 -30.87921 -30.11724 -29.76319 -27.68972 -26.56038 -25.86975 -24.26644 -22.95412 -22.80802 -21.44405 -20.65586 -20.23586 -19.35414 -17.59749 -17.41138 -16.88817 -16.77862 -16.53634 -16.36898 -15.90955 -15.70716 -15.55937 -15.24973 -14.89572 -14.77029 -14.64701 -14.50018 -14.23920 -13.79470 -13.54403 -13.51241 -13.24239 -13.15370 -12.91789 -12.87481 -12.86077 -12.66844 -12.64612 -12.51595 -12.20990 -12.00207 -11.93097 -11.83519 -11.72344 -11.60413 -11.41985 -11.33540 -11.28807 -11.13742 -10.29642 -10.27825 -9.64572 -9.43667 -8.68010 -8.35438 -6.13747 1.23888 1.43044 1.44340 1.54120 1.54907 2.03663 2.26691 2.86716 2.98510 3.20274 3.37909 3.60517 3.77487 3.90872 3.94981 4.00609 4.06635 4.12470 4.17700 4.20083 4.24224 4.28332 4.29986 4.43699 4.53846 4.54287 4.58441 4.65196 4.69295 4.77832 4.78502 4.82659 4.86527 4.88869 4.95526 5.01135 5.12503 5.15679 5.17402 5.19067 5.20211 5.25835 5.32303 5.38141 5.40320 5.52556 5.57319 5.63251 5.91157 6.06434 6.18448 6.34141 7.05551 7.16473 8.73451 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.002303 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.412313 B =12153.072975 C =12687.494079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.087 4.087 4 H 0.060 0.940 5 C -0.145 4.145 6 C 0.052 3.948 7 N -0.493 5.493 8 C 0.045 3.955 9 C -0.148 4.148 10 C 0.140 3.860 11 H 0.097 0.903 12 C 0.054 3.946 13 H 0.024 0.976 14 C -0.092 4.092 15 C -0.126 4.126 16 C 0.099 3.901 17 N -0.603 5.603 18 C 0.537 3.463 19 O -0.552 6.552 20 C -0.124 4.124 21 S -0.149 6.149 22 C -0.546 4.546 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.261 1.261 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.112 0.888 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -16.363 -20.143 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.106 4.106 4 H 0.079 0.921 5 C -0.203 4.203 6 C -0.076 4.076 7 N -0.217 5.217 8 C -0.083 4.083 9 C -0.186 4.186 10 C 0.036 3.964 11 H 0.115 0.885 12 C -0.056 4.056 13 H 0.042 0.958 14 C -0.130 4.130 15 C -0.165 4.165 16 C -0.022 4.022 17 N -0.337 5.337 18 C 0.325 3.675 19 O -0.430 6.430 20 C -0.275 4.275 21 S 0.078 5.922 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.186 1.186 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.130 0.870 48 H 0.107 0.893 49 H 0.110 0.890 50 H 0.122 0.878 51 H 0.124 0.876 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.213 -15.731 -19.356 28.708 hybrid contribution 2.142 0.796 0.100 2.287 sum -12.071 -14.935 -19.256 27.195 Atomic orbital electron populations 1.21819 0.95903 1.01640 1.01608 1.21415 0.95426 0.95233 1.02273 1.21164 0.93458 0.97479 0.98485 0.92119 1.21828 1.01796 0.99957 0.96681 1.22402 0.96645 0.97255 0.91270 1.64723 1.05918 1.48736 1.02313 1.23276 0.98338 0.95823 0.90845 1.22761 0.95298 1.02413 0.98098 1.21834 0.80964 0.99087 0.94509 0.88480 1.22697 0.89403 0.98214 0.95291 0.95783 1.21238 0.92676 0.98267 1.00836 1.21912 0.97289 1.03299 0.93981 1.22088 0.90677 0.95922 0.93516 1.47910 1.07879 1.33358 1.44524 1.20080 0.89941 0.79498 0.77954 1.90570 1.49357 1.48024 1.55089 1.23391 0.96714 1.03690 1.03707 1.85551 1.11090 1.38414 1.57147 1.23160 0.92062 1.20551 1.33642 0.89938 1.26140 1.04797 0.93931 0.94320 1.70184 1.37778 1.17587 1.29213 0.85008 0.76052 0.78363 0.78613 1.18608 1.20422 1.18586 0.93432 0.92324 0.92579 0.91967 0.91792 0.91897 0.91700 0.93372 0.96057 0.89605 0.94236 0.89165 0.89713 0.91500 0.90376 0.89679 0.92640 0.87001 0.89340 0.88994 0.87819 0.87607 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.16 16 2 C -0.11 -1.45 5.35 30.59 0.16 -1.28 16 3 C -0.09 -1.29 2.27 -10.79 -0.02 -1.32 16 4 H 0.06 1.04 6.91 -2.39 -0.02 1.02 16 5 C -0.14 -1.82 8.80 71.98 0.63 -1.18 16 6 C 0.05 0.90 4.18 86.30 0.36 1.26 16 7 N -0.49 -9.75 4.68 -858.53 -4.02 -13.77 16 8 C 0.05 1.03 5.40 86.57 0.47 1.50 16 9 C -0.15 -4.28 5.66 31.24 0.18 -4.11 16 10 C 0.14 3.55 3.25 46.16 0.15 3.70 16 11 H 0.10 2.22 8.06 -2.38 -0.02 2.20 16 12 C 0.05 1.15 1.69 45.54 0.08 1.23 16 13 H 0.02 0.65 7.91 -2.39 -0.02 0.63 16 14 C -0.09 -1.38 5.94 30.33 0.18 -1.20 16 15 C -0.13 -1.82 5.94 30.78 0.18 -1.64 16 16 C 0.10 1.88 6.31 86.01 0.54 2.42 16 17 N -0.60 -16.82 2.91 -791.63 -2.30 -19.13 16 18 C 0.54 20.55 7.74 87.66 0.68 21.23 16 19 O -0.55 -25.46 12.46 -3.03 -0.04 -25.50 16 20 C -0.12 -5.02 4.64 71.24 0.33 -4.69 16 21 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 22 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 23 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 24 C 0.01 0.74 5.49 84.86 0.47 1.20 16 25 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 26 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 29 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.64 6.70 -2.38 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 1.04 7.62 -2.38 -0.02 1.02 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.74 6.86 -2.38 -0.02 0.72 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.02 0.43 7.96 -2.38 -0.02 0.41 16 39 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 40 H 0.04 0.96 7.59 -2.39 -0.02 0.94 16 41 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 42 H 0.08 3.18 5.21 -5.63 -0.03 3.15 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 1.00 8.03 -2.38 -0.02 0.99 16 45 H 0.08 1.13 8.05 -2.39 -0.02 1.12 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.71 6.20 -2.39 -0.01 1.69 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.10 3.83 7.57 -2.40 -0.02 3.81 16 51 H 0.11 3.90 8.14 -2.39 -0.02 3.89 16 52 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -72.76 404.90 1.37 -71.39 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.85 Total: 21.53 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.73 Total: -14.66 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -6.04 Total: -88.84 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.04 Total: -25.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -72.76 1.37 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.521 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds