Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 H 1.09002 * 109.46651 * 55.00549 * 3 2 1 5 5 C 1.52995 * 109.47103 * 295.00259 * 3 2 1 6 6 C 1.53000 * 109.46623 * 175.00018 * 3 2 1 7 7 N 1.46899 * 109.46783 * 181.70220 * 6 3 2 8 8 C 1.46836 * 111.00123 * 51.74437 * 7 6 3 9 9 C 1.53225 * 109.43674 * 187.83204 * 8 7 6 10 10 C 1.52707 * 109.00942 * 303.22545 * 9 8 7 11 11 C 1.53418 * 113.71451 * 185.09860 * 10 9 8 12 12 N 1.47678 * 85.96399 * 137.83578 * 11 10 9 13 13 C 1.34786 * 134.45069 * 155.72852 * 12 11 10 14 14 O 1.21273 * 120.00010 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.99781 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47057 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99982 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00427 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99679 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99930 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46786 * 120.00156 * 21 19 17 24 24 H 1.48497 * 109.46886 * 239.99955 * 21 19 17 25 25 C 1.47676 * 91.09630 * 335.72689 * 12 11 10 26 26 C 1.52708 * 112.84788 * 53.66704 * 10 9 8 27 27 C 1.46829 * 111.00108 * 176.29724 * 7 6 3 28 28 H 1.09003 * 109.47083 * 299.99667 * 1 2 3 29 29 H 1.09002 * 109.47222 * 59.99248 * 1 2 3 30 30 H 1.08995 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47083 * 240.00333 * 2 1 3 32 32 H 1.08992 * 109.47125 * 120.00563 * 2 1 3 33 33 H 1.09003 * 109.46892 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47083 * 299.99698 * 5 3 2 35 35 H 1.08994 * 109.47661 * 60.00091 * 5 3 2 36 36 H 1.08994 * 109.47792 * 301.70393 * 6 3 2 37 37 H 1.09000 * 109.47238 * 61.70741 * 6 3 2 38 38 H 1.09001 * 109.47465 * 307.82382 * 8 7 6 39 39 H 1.08998 * 109.47724 * 67.84361 * 8 7 6 40 40 H 1.08996 * 109.54531 * 183.36791 * 9 8 7 41 41 H 1.08995 * 109.54490 * 63.08395 * 9 8 7 42 42 H 1.09004 * 113.79488 * 252.09525 * 11 10 9 43 43 H 1.08999 * 113.79872 * 23.57012 * 11 10 9 44 44 H 1.09007 * 109.47266 * 299.99945 * 15 13 12 45 45 H 1.08996 * 109.47449 * 59.99928 * 15 13 12 46 46 H 0.97009 * 119.99959 * 180.02562 * 20 19 17 47 47 H 1.08999 * 113.79237 * 270.00467 * 25 12 11 48 48 H 1.09007 * 113.79252 * 138.53054 * 25 12 11 49 49 H 1.08994 * 109.54952 * 186.46986 * 26 10 9 50 50 H 1.09003 * 109.54696 * 66.19484 * 26 10 9 51 51 H 1.08996 * 109.48039 * 292.16027 * 27 7 6 52 52 H 1.09004 * 109.47786 * 52.18414 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0511 2.8298 0.1667 8 6 3.3390 3.6075 1.1886 9 6 3.7305 5.0841 1.0704 10 6 5.2471 5.2084 1.1985 11 6 5.7478 6.6585 1.2193 12 7 6.6573 6.2190 2.2966 13 6 7.8387 6.6597 2.7729 14 8 8.3730 6.0836 3.6966 15 6 8.4955 7.8684 2.1575 16 16 10.0565 8.2060 3.0093 17 6 10.5939 9.6243 2.1125 18 1 9.9896 10.0149 1.3071 19 6 11.7933 10.2402 2.4419 20 7 12.5295 9.7645 3.4239 21 14 12.3634 11.7435 1.4907 22 1 11.3638 12.0752 0.4439 23 1 12.5059 12.8927 2.4204 24 1 13.6733 11.4578 0.8524 25 6 5.7539 5.1034 2.6429 26 6 6.0004 4.3126 0.2177 27 6 5.5039 2.8717 0.3754 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9989 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3969 36 1 3.8545 0.9303 1.0422 37 1 4.0007 0.9315 -0.7317 38 1 2.2641 3.5034 1.0409 39 1 3.6073 3.2385 2.1785 40 1 3.2494 5.6537 1.8655 41 1 3.4136 5.4689 0.1011 42 1 6.2610 6.9596 0.3060 43 1 4.9967 7.3785 1.5442 44 1 8.6916 7.6776 1.1023 45 1 7.8347 8.7298 2.2542 46 1 13.3676 10.1952 3.6544 47 1 5.0047 5.3604 3.3917 48 1 6.2720 4.1692 2.8604 49 1 7.0685 4.3558 0.4308 50 1 5.8166 4.6523 -0.8016 51 1 5.7375 2.5144 1.3783 52 1 5.9953 2.2354 -0.3608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672998851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -14.881318 kcal Electronic energy + Delta-G solvation = -27563.212642 eV Core-core repulsion = 23882.357952 eV Total energy + Delta-G solvation = -3680.854690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05483 -38.97230 -37.65032 -35.87591 -32.43427 -32.38726 -31.35871 -30.13358 -29.32383 -27.40620 -26.22979 -25.83312 -25.34821 -23.76553 -23.41076 -21.75357 -19.99650 -19.27451 -18.43439 -17.65913 -16.67909 -16.20678 -15.89349 -15.56156 -15.53206 -15.33741 -14.97213 -14.79924 -14.37965 -14.19452 -13.94162 -13.84243 -13.54964 -13.33509 -12.87365 -12.80267 -12.61982 -12.52623 -12.39040 -12.34871 -12.11370 -12.03456 -11.79456 -11.71049 -11.41953 -11.15204 -11.06620 -11.01954 -11.00271 -10.89452 -10.77578 -10.70749 -10.51847 -10.38120 -9.79777 -9.28346 -9.06801 -8.58728 -8.48889 -8.21831 -6.49354 -6.21038 -3.91514 2.81121 3.11334 3.21983 3.25585 3.31343 3.54020 3.58719 4.06301 4.21015 4.30921 4.48221 4.48797 4.52739 4.62398 4.72342 4.89319 4.92997 4.99009 5.06558 5.09828 5.13100 5.14200 5.20157 5.28015 5.33167 5.34350 5.34543 5.41785 5.45053 5.45654 5.51923 5.56382 5.56890 5.63280 5.66031 5.68161 5.69981 5.76045 5.78879 5.86746 5.91951 5.99754 6.00945 6.09066 6.11416 6.14153 6.17684 6.79678 6.82524 7.60631 7.90251 8.36255 8.60162 9.24297 10.86490 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.001824 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.368157 B =15344.997466 C =15584.772571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.095 4.095 4 H 0.072 0.928 5 C -0.140 4.140 6 C 0.060 3.940 7 N -0.534 5.534 8 C 0.051 3.949 9 C -0.099 4.099 10 C -0.092 4.092 11 C 0.111 3.889 12 N -0.648 5.648 13 C 0.554 3.446 14 O -0.518 6.518 15 C -0.144 4.144 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.116 3.884 26 C -0.089 4.089 27 C 0.058 3.942 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.034 0.966 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.865 -16.958 -9.808 32.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.091 0.909 5 C -0.197 4.197 6 C -0.068 4.068 7 N -0.259 5.259 8 C -0.077 4.077 9 C -0.137 4.137 10 C -0.093 4.093 11 C -0.012 4.012 12 N -0.387 5.387 13 C 0.344 3.656 14 O -0.393 6.393 15 C -0.295 4.295 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.007 4.007 26 C -0.127 4.127 27 C -0.069 4.069 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.053 0.947 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.764 -17.500 -8.689 31.544 hybrid contribution -0.019 1.322 -0.777 1.533 sum -24.784 -16.178 -9.467 31.074 Atomic orbital electron populations 1.21803 0.95754 1.01498 1.01950 1.21551 0.96047 0.96280 1.01922 1.21309 0.94517 0.96129 0.99377 0.90941 1.21767 1.00178 1.01516 0.96211 1.22158 0.95034 0.89068 1.00529 1.61854 1.04199 1.11739 1.48120 1.22208 0.99045 0.93578 0.92886 1.21500 0.93469 0.95888 1.02893 1.22138 0.95719 0.95754 0.95682 1.23192 0.91128 0.95813 0.91052 1.50035 1.19396 1.32190 1.37046 1.20038 0.78940 0.84496 0.82125 1.90703 1.62716 1.57624 1.28207 1.23464 1.04478 0.97224 1.04304 1.85397 1.14676 1.37866 1.45605 1.22904 1.09352 1.14735 1.21258 0.90887 1.24995 0.95471 0.97808 0.95313 1.70031 1.13101 1.39739 1.27413 0.86112 0.78611 0.81301 0.79449 1.19608 1.20561 1.20546 1.23121 0.90932 0.91041 0.95627 1.21303 0.99267 0.93154 0.98943 1.22072 0.87580 0.97326 0.99966 0.92858 0.92377 0.92926 0.91938 0.92237 0.91467 0.93035 0.93268 0.95108 0.90735 0.90016 0.94913 0.91033 0.90397 0.89899 0.89810 0.89410 0.89452 0.92243 0.90326 0.90590 0.90764 0.90387 0.94741 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.12 -0.62 5.40 -26.73 -0.14 -0.77 16 3 C -0.09 -0.54 1.90 -90.62 -0.17 -0.71 16 4 H 0.07 0.43 6.04 -51.93 -0.31 0.11 16 5 C -0.14 -0.82 8.73 37.16 0.32 -0.49 16 6 C 0.06 0.40 4.54 -3.82 -0.02 0.38 16 7 N -0.53 -3.96 4.03 -234.46 -0.95 -4.90 16 8 C 0.05 0.35 4.92 -3.74 -0.02 0.33 16 9 C -0.10 -0.68 5.29 -26.77 -0.14 -0.83 16 10 C -0.09 -0.82 0.79 -154.47 -0.12 -0.95 16 11 C 0.11 1.17 7.75 -3.19 -0.02 1.14 16 12 N -0.65 -9.62 3.46 -180.60 -0.63 -10.24 16 13 C 0.55 11.18 8.07 -10.98 -0.09 11.09 16 14 O -0.52 -12.60 16.59 5.56 0.09 -12.50 16 15 C -0.14 -3.07 5.90 36.00 0.21 -2.86 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 17 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.12 1.35 7.73 -3.18 -0.02 1.32 16 26 C -0.09 -0.82 5.22 -26.77 -0.14 -0.96 16 27 C 0.06 0.49 5.42 -3.75 -0.02 0.47 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.45 7.50 -51.93 -0.39 0.07 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.26 6.56 -51.93 -0.34 -0.08 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.50 5.58 -51.93 -0.29 0.21 16 39 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16 40 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 44 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 48 H 0.08 0.96 7.66 -51.92 -0.40 0.56 16 49 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.03 0.32 7.68 -51.93 -0.40 -0.08 16 52 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 414.80 15.07 6.25 6.25 Total: -1.00 -34.23 414.80 -11.15 -45.38 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -9.60 Total: -4.57 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.18 Total: -6.34 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.84 Total: -40.85 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.23 -11.15 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672998851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.496 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds