Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 H 1.09002 * 109.46651 * 55.00549 * 3 2 1 5 5 C 1.52995 * 109.47103 * 295.00259 * 3 2 1 6 6 C 1.53000 * 109.46623 * 175.00018 * 3 2 1 7 7 N 1.46899 * 109.46783 * 181.70220 * 6 3 2 8 8 C 1.46836 * 111.00123 * 51.74437 * 7 6 3 9 9 C 1.53225 * 109.43674 * 187.83204 * 8 7 6 10 10 C 1.52707 * 109.00942 * 303.22545 * 9 8 7 11 11 C 1.53418 * 113.71451 * 185.09860 * 10 9 8 12 12 N 1.47678 * 85.96399 * 137.83578 * 11 10 9 13 13 C 1.34786 * 134.45069 * 155.72852 * 12 11 10 14 14 O 1.21273 * 120.00010 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.99781 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47057 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99982 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00427 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99679 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99930 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46786 * 120.00156 * 21 19 17 24 24 H 1.48497 * 109.46886 * 239.99955 * 21 19 17 25 25 C 1.47676 * 91.09630 * 335.72689 * 12 11 10 26 26 C 1.52708 * 112.84788 * 53.66704 * 10 9 8 27 27 C 1.46829 * 111.00108 * 176.29724 * 7 6 3 28 28 H 1.09003 * 109.47083 * 299.99667 * 1 2 3 29 29 H 1.09002 * 109.47222 * 59.99248 * 1 2 3 30 30 H 1.08995 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47083 * 240.00333 * 2 1 3 32 32 H 1.08992 * 109.47125 * 120.00563 * 2 1 3 33 33 H 1.09003 * 109.46892 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47083 * 299.99698 * 5 3 2 35 35 H 1.08994 * 109.47661 * 60.00091 * 5 3 2 36 36 H 1.08994 * 109.47792 * 301.70393 * 6 3 2 37 37 H 1.09000 * 109.47238 * 61.70741 * 6 3 2 38 38 H 1.09001 * 109.47465 * 307.82382 * 8 7 6 39 39 H 1.08998 * 109.47724 * 67.84361 * 8 7 6 40 40 H 1.08996 * 109.54531 * 183.36791 * 9 8 7 41 41 H 1.08995 * 109.54490 * 63.08395 * 9 8 7 42 42 H 1.09004 * 113.79488 * 252.09525 * 11 10 9 43 43 H 1.08999 * 113.79872 * 23.57012 * 11 10 9 44 44 H 1.09007 * 109.47266 * 299.99945 * 15 13 12 45 45 H 1.08996 * 109.47449 * 59.99928 * 15 13 12 46 46 H 0.97009 * 119.99959 * 180.02562 * 20 19 17 47 47 H 1.08999 * 113.79237 * 270.00467 * 25 12 11 48 48 H 1.09007 * 113.79252 * 138.53054 * 25 12 11 49 49 H 1.08994 * 109.54952 * 186.46986 * 26 10 9 50 50 H 1.09003 * 109.54696 * 66.19484 * 26 10 9 51 51 H 1.08996 * 109.48039 * 292.16027 * 27 7 6 52 52 H 1.09004 * 109.47786 * 52.18414 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0511 2.8298 0.1667 8 6 3.3390 3.6075 1.1886 9 6 3.7305 5.0841 1.0704 10 6 5.2471 5.2084 1.1985 11 6 5.7478 6.6585 1.2193 12 7 6.6573 6.2190 2.2966 13 6 7.8387 6.6597 2.7729 14 8 8.3730 6.0836 3.6966 15 6 8.4955 7.8684 2.1575 16 16 10.0565 8.2060 3.0093 17 6 10.5939 9.6243 2.1125 18 1 9.9896 10.0149 1.3071 19 6 11.7933 10.2402 2.4419 20 7 12.5295 9.7645 3.4239 21 14 12.3634 11.7435 1.4907 22 1 11.3638 12.0752 0.4439 23 1 12.5059 12.8927 2.4204 24 1 13.6733 11.4578 0.8524 25 6 5.7539 5.1034 2.6429 26 6 6.0004 4.3126 0.2177 27 6 5.5039 2.8717 0.3754 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9989 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3969 36 1 3.8545 0.9303 1.0422 37 1 4.0007 0.9315 -0.7317 38 1 2.2641 3.5034 1.0409 39 1 3.6073 3.2385 2.1785 40 1 3.2494 5.6537 1.8655 41 1 3.4136 5.4689 0.1011 42 1 6.2610 6.9596 0.3060 43 1 4.9967 7.3785 1.5442 44 1 8.6916 7.6776 1.1023 45 1 7.8347 8.7298 2.2542 46 1 13.3676 10.1952 3.6544 47 1 5.0047 5.3604 3.3917 48 1 6.2720 4.1692 2.8604 49 1 7.0685 4.3558 0.4308 50 1 5.8166 4.6523 -0.8016 51 1 5.7375 2.5144 1.3783 52 1 5.9953 2.2354 -0.3608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672998851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -35.617925 kcal Electronic energy + Delta-G solvation = -27564.111849 eV Core-core repulsion = 23882.357952 eV Total energy + Delta-G solvation = -3681.753897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00333 -39.95777 -38.77495 -36.53817 -34.61185 -33.29522 -31.99396 -31.35882 -30.13670 -28.29308 -27.72718 -27.10923 -26.47683 -24.40754 -24.00818 -22.41245 -20.79212 -20.38789 -19.55698 -19.22980 -18.02668 -17.13101 -16.93064 -16.84662 -16.76130 -16.11634 -16.05893 -15.80536 -15.68408 -15.49102 -14.88977 -14.65687 -14.41864 -14.28138 -14.06853 -13.91062 -13.64991 -13.39234 -13.25952 -13.17614 -12.99132 -12.92853 -12.89612 -12.73801 -12.63610 -12.60278 -12.19320 -12.07585 -11.81394 -11.72880 -11.57124 -11.41616 -11.35933 -11.23556 -11.17895 -11.09880 -10.69487 -10.31634 -9.74729 -9.17408 -8.71317 -8.36905 -6.16266 1.20030 1.40545 1.42023 1.54169 1.56749 1.98028 2.25196 2.93479 2.97308 3.17800 3.25880 3.57917 3.69290 3.89833 3.90145 4.02382 4.05328 4.19240 4.21692 4.28500 4.37890 4.41359 4.43392 4.46750 4.51893 4.56442 4.60364 4.64938 4.67980 4.71355 4.78681 4.86163 4.87756 4.88746 4.95385 4.96981 4.99653 5.13429 5.16156 5.22764 5.24984 5.27386 5.32269 5.37067 5.39478 5.41341 5.57313 5.66148 6.17762 6.18553 6.23303 6.59370 7.04039 7.09348 8.72817 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.001824 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.368157 B =15344.997466 C =15584.772571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.074 0.926 5 C -0.135 4.135 6 C 0.061 3.939 7 N -0.533 5.533 8 C 0.050 3.950 9 C -0.091 4.091 10 C -0.073 4.073 11 C 0.108 3.892 12 N -0.646 5.646 13 C 0.550 3.450 14 O -0.574 6.574 15 C -0.117 4.117 16 S -0.153 6.153 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.001 2.999 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.273 1.273 25 C 0.110 3.890 26 C -0.087 4.087 27 C 0.062 3.938 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.272 0.728 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.088 0.912 51 H 0.022 0.978 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.573 -16.043 -11.967 34.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.192 4.192 6 C -0.067 4.067 7 N -0.258 5.258 8 C -0.078 4.078 9 C -0.129 4.129 10 C -0.073 4.073 11 C -0.013 4.013 12 N -0.382 5.382 13 C 0.340 3.660 14 O -0.454 6.454 15 C -0.268 4.268 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.012 4.012 26 C -0.125 4.125 27 C -0.066 4.066 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.044 0.956 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.040 0.960 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.546 -16.602 -10.888 33.955 hybrid contribution 0.683 0.909 -0.140 1.146 sum -26.863 -15.693 -11.028 33.007 Atomic orbital electron populations 1.21793 0.95288 1.01750 1.02063 1.21534 0.96415 0.95920 1.01818 1.21256 0.93588 0.96463 0.99409 0.90785 1.21717 1.00532 1.00966 0.95978 1.22170 0.95800 0.88568 1.00161 1.61884 1.03424 1.12272 1.48224 1.22267 0.99730 0.93468 0.92335 1.21492 0.91134 0.96087 1.04196 1.21998 0.97387 0.94589 0.93373 1.23613 0.90469 0.97304 0.89928 1.50103 1.18234 1.32603 1.37223 1.19801 0.80507 0.84033 0.81699 1.90672 1.64769 1.59210 1.30736 1.23251 1.00841 0.98719 1.03992 1.85593 1.19930 1.38832 1.48227 1.23222 1.09995 1.14719 1.21461 0.89933 1.26161 0.95365 1.01365 0.96234 1.70195 1.13701 1.41618 1.29277 0.84872 0.78330 0.76478 0.78052 1.17964 1.19802 1.19816 1.23439 0.90275 0.89348 0.98156 1.21261 0.97820 0.93861 0.99521 1.21992 0.88503 0.96774 0.99342 0.92783 0.92185 0.92672 0.91982 0.92458 0.92064 0.93451 0.92634 0.95734 0.90879 0.88665 0.95644 0.89425 0.89203 0.89065 0.87079 0.87846 0.87749 0.91928 0.88452 0.92080 0.93281 0.89349 0.96010 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 71.98 0.70 -0.49 16 2 C -0.12 -1.05 5.40 30.60 0.17 -0.89 16 3 C -0.09 -0.84 1.90 -10.79 -0.02 -0.86 16 4 H 0.07 0.70 6.04 -2.39 -0.01 0.68 16 5 C -0.13 -1.29 8.73 71.98 0.63 -0.66 16 6 C 0.06 0.72 4.54 86.30 0.39 1.11 16 7 N -0.53 -6.94 4.03 -895.69 -3.61 -10.55 16 8 C 0.05 0.55 4.92 86.39 0.43 0.98 16 9 C -0.09 -0.93 5.29 30.57 0.16 -0.77 16 10 C -0.07 -1.13 0.79 -52.06 -0.04 -1.17 16 11 C 0.11 1.95 7.75 86.29 0.67 2.62 16 12 N -0.65 -18.52 3.46 -843.69 -2.92 -21.44 16 13 C 0.55 22.48 8.07 87.65 0.71 23.18 16 14 O -0.57 -29.15 16.59 -3.01 -0.05 -29.20 16 15 C -0.12 -4.99 5.90 71.23 0.42 -4.56 16 16 S -0.15 -8.83 20.57 -56.49 -1.16 -10.00 16 17 C -0.55 -31.89 9.50 67.96 0.65 -31.25 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.80 13.22 21.65 0.29 -56.52 16 21 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.11 2.43 7.73 86.29 0.67 3.10 16 26 C -0.09 -1.48 5.22 30.57 0.16 -1.32 16 27 C 0.06 0.98 5.42 86.39 0.47 1.45 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.45 6.56 -2.39 -0.02 0.43 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.67 7.50 -2.39 -0.02 0.65 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.47 6.56 -2.39 -0.02 0.45 16 36 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.86 5.58 -2.39 -0.01 0.85 16 39 H 0.03 0.33 8.09 -2.39 -0.02 0.31 16 40 H 0.09 0.69 8.04 -2.39 -0.02 0.67 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.56 8.09 -2.38 -0.02 1.54 16 43 H 0.11 1.51 8.09 -2.39 -0.02 1.49 16 44 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 45 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 47 H 0.10 1.84 8.02 -2.39 -0.02 1.82 16 48 H 0.06 1.56 7.66 -2.38 -0.02 1.54 16 49 H 0.05 1.09 8.01 -2.39 -0.02 1.08 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.02 0.40 7.68 -2.39 -0.02 0.38 16 52 H 0.08 1.19 8.10 -2.38 -0.02 1.17 16 Total: -1.00 -77.49 414.80 2.05 -75.45 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.86 Total: 14.46 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 6.61 Total: -8.30 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -6.24 Total: -88.50 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -10.00 kcal Total: -77.49 2.05 -75.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672998851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.828 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds