Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47088 * 2 1 4 4 N 1.46899 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.46863 * 111.00003 * 169.99775 * 4 3 2 6 6 C 1.53183 * 109.43042 * 173.48514 * 5 4 3 7 7 C 1.52332 * 109.33833 * 57.94685 * 6 5 4 8 8 C 1.54487 * 110.23034 * 66.57951 * 7 6 5 9 9 C 1.55026 * 101.52066 * 153.37706 * 8 7 6 10 10 H 1.09005 * 110.35012 * 82.52597 * 9 8 7 11 11 C 1.53001 * 110.44599 * 204.75904 * 9 8 7 12 12 N 1.47481 * 104.90782 * 323.66348 * 9 8 7 13 13 C 1.34777 * 125.66483 * 204.04180 * 12 9 8 14 14 O 1.21280 * 119.99844 * 359.97438 * 13 12 9 15 15 C 1.50701 * 120.00101 * 179.97438 * 13 12 9 16 16 S 1.80992 * 109.46935 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99945 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00027 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00244 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47522 * 89.99792 * 21 19 17 23 23 H 1.48509 * 109.46884 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47303 * 329.99412 * 21 19 17 25 25 C 1.47194 * 108.67524 * 24.01144 * 12 9 8 26 26 C 1.52310 * 110.94894 * 304.18036 * 7 6 5 27 27 C 1.46849 * 111.00377 * 45.60533 * 4 3 2 28 28 H 1.08993 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47352 * 300.00598 * 1 2 3 30 30 H 1.09007 * 109.47281 * 60.00119 * 1 2 3 31 31 H 1.08994 * 109.47224 * 239.99682 * 2 1 3 32 32 H 1.09005 * 109.47045 * 119.99402 * 2 1 3 33 33 H 1.08994 * 109.47348 * 59.99758 * 3 2 1 34 34 H 1.09005 * 109.46689 * 299.99620 * 3 2 1 35 35 H 1.09002 * 109.47973 * 293.47576 * 5 4 3 36 36 H 1.08995 * 109.48151 * 53.49523 * 5 4 3 37 37 H 1.08998 * 109.49629 * 177.92447 * 6 5 4 38 38 H 1.09008 * 109.49353 * 297.99669 * 6 5 4 39 39 H 1.08995 * 111.01843 * 271.44436 * 8 7 6 40 40 H 1.09005 * 111.01482 * 35.32137 * 8 7 6 41 41 H 1.08996 * 109.47477 * 176.99248 * 11 9 8 42 42 H 1.08999 * 109.47465 * 296.99586 * 11 9 8 43 43 H 1.09009 * 109.47053 * 56.99098 * 11 9 8 44 44 H 1.08999 * 109.47125 * 300.00206 * 15 13 12 45 45 H 1.09004 * 109.47083 * 60.00142 * 15 13 12 46 46 H 0.97005 * 120.00093 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.90890 * 239.10560 * 25 12 9 48 48 H 1.08998 * 110.07475 * 117.92238 * 25 12 9 49 49 H 1.09001 * 109.49015 * 295.85336 * 26 7 6 50 50 H 1.08998 * 109.49266 * 175.78199 * 26 7 6 51 51 H 1.09002 * 109.47847 * 306.49649 * 27 4 3 52 52 H 1.09006 * 109.47691 * 66.50604 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7928 -0.2388 6 6 5.5578 2.7832 -0.0713 7 6 6.1654 1.7758 -1.0390 8 6 5.9597 2.2442 -2.4967 9 6 7.1548 1.5636 -3.2122 10 1 6.9128 0.5284 -3.4530 11 6 7.5249 2.3317 -4.4826 12 7 8.2613 1.6189 -2.2387 13 6 9.5746 1.5788 -2.5387 14 8 9.9301 1.4895 -3.6948 15 6 10.6014 1.6450 -1.4376 16 16 12.2613 1.5704 -2.1554 17 6 13.2333 1.6631 -0.6887 18 1 12.7511 1.7398 0.2747 19 6 14.6186 1.6387 -0.7714 20 7 15.2062 1.5458 -1.9456 21 14 15.6490 1.7363 0.7836 22 1 15.9035 0.3659 1.2957 23 1 16.9427 2.3992 0.4793 24 1 14.9203 2.5217 1.8119 25 6 7.6931 1.7258 -0.8850 26 6 5.5575 0.3936 -0.8391 27 6 4.0349 0.4835 -0.9806 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7829 3.1079 -1.2513 36 1 3.5951 3.4861 0.4779 37 1 5.9534 3.7763 -0.2838 38 1 5.8095 2.5023 0.9515 39 1 5.0103 1.8841 -2.8928 40 1 6.0260 3.3297 -2.5715 41 1 8.3988 1.8717 -4.9438 42 1 6.6885 2.3036 -5.1810 43 1 7.7511 3.3673 -4.2282 44 1 10.4852 2.5791 -0.8881 45 1 10.4607 0.8041 -0.7585 46 1 16.1744 1.5284 -2.0034 47 1 8.0478 2.6377 -0.4046 48 1 7.9781 0.8581 -0.2901 49 1 5.8093 0.0260 0.1557 50 1 5.9529 -0.2898 -1.5906 51 1 3.5946 -0.4974 -0.8016 52 1 3.7823 0.8170 -1.9871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691274770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -41.641099 kcal Electronic energy + Delta-G solvation = -28236.192900 eV Core-core repulsion = 24554.177819 eV Total energy + Delta-G solvation = -3682.015081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96422 -39.03226 -37.22829 -34.69946 -32.42015 -32.35625 -32.15762 -31.25646 -28.79650 -27.98794 -26.24821 -25.47064 -25.06391 -23.99849 -22.48125 -21.82630 -20.89182 -19.04122 -18.57963 -17.57067 -16.81553 -16.26554 -16.02146 -15.75072 -15.30053 -14.96984 -14.78720 -14.63922 -14.44814 -14.17841 -13.98683 -13.62029 -13.36057 -13.29883 -12.95765 -12.86855 -12.68528 -12.52681 -12.27232 -12.18869 -12.06696 -11.90745 -11.70569 -11.58474 -11.43140 -11.34782 -11.25490 -11.08434 -11.04747 -10.98885 -10.74379 -10.69031 -10.40275 -10.35764 -9.78928 -9.08987 -9.04771 -8.60729 -8.41818 -8.20744 -6.47669 -6.19827 -3.89996 2.95989 3.12396 3.23570 3.27659 3.31794 3.51592 3.65275 4.16753 4.22115 4.29526 4.35570 4.51723 4.58256 4.69020 4.85950 4.90426 4.95820 5.01963 5.03556 5.09062 5.15261 5.17172 5.23337 5.23668 5.28637 5.31121 5.40423 5.42342 5.47892 5.52319 5.56288 5.60926 5.65425 5.70990 5.72707 5.75426 5.76800 5.78546 5.83926 5.87280 5.93702 6.06566 6.07261 6.17913 6.20430 6.38538 6.71741 6.75336 6.77142 7.61433 7.77397 8.37171 8.64513 9.25474 10.87590 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.002246 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.346801 B =12463.451087 C =13316.695109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.056 3.944 4 N -0.538 5.538 5 C 0.059 3.941 6 C -0.100 4.100 7 C -0.068 4.068 8 C -0.122 4.122 9 C 0.139 3.861 10 H 0.069 0.931 11 C -0.166 4.166 12 N -0.622 5.622 13 C 0.550 3.450 14 O -0.514 6.514 15 C -0.147 4.147 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.113 3.887 26 C -0.103 4.103 27 C 0.050 3.950 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.268 0.732 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.971 0.107 4.036 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.072 4.072 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.138 4.138 7 C -0.069 4.069 8 C -0.160 4.160 9 C 0.035 3.965 10 H 0.087 0.913 11 C -0.223 4.223 12 N -0.359 5.359 13 C 0.339 3.661 14 O -0.388 6.388 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.140 4.140 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -29.007 -0.177 2.655 29.129 hybrid contribution -0.052 0.464 1.655 1.720 sum -29.059 0.287 4.310 29.378 Atomic orbital electron populations 1.21738 0.95551 1.01846 1.01791 1.21709 0.95727 0.96513 1.02780 1.22151 0.87191 0.97150 1.00697 1.61952 1.06996 1.07204 1.50179 1.22083 0.95393 0.89800 0.99642 1.21483 0.94059 0.98470 0.99834 1.21071 0.93972 0.96299 0.95563 1.22977 0.97852 1.00918 0.94257 1.21820 0.85725 0.99026 0.89893 0.91265 1.22181 1.03057 1.00630 0.96472 1.48614 1.04846 1.75180 1.07304 1.19958 0.80760 0.75183 0.90215 1.90637 1.79115 1.48233 1.20843 1.23518 1.01329 1.04651 1.00259 1.85363 0.90045 1.96233 1.11762 1.22864 0.93493 1.58494 0.93403 0.90974 1.24988 0.96895 0.94591 0.97121 1.70018 1.10318 1.46770 1.23189 0.86176 0.79163 0.78392 0.81816 1.20269 1.20761 1.19698 1.21969 0.92108 1.02050 0.84895 1.21514 0.94043 0.95555 1.02915 1.22280 0.95355 0.96877 0.93255 0.92500 0.92620 0.92879 0.91615 0.91002 0.90753 0.95077 0.94718 0.90772 0.90989 0.90569 0.90323 0.90515 0.89084 0.92676 0.92724 0.89476 0.89445 0.92215 0.91263 0.91199 0.90585 0.91084 0.90001 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.13 -0.74 5.18 -26.73 -0.14 -0.88 16 3 C 0.06 0.35 5.27 -3.82 -0.02 0.33 16 4 N -0.54 -4.02 4.79 -234.47 -1.12 -5.14 16 5 C 0.06 0.42 5.26 -3.75 -0.02 0.40 16 6 C -0.10 -0.78 4.72 -26.98 -0.13 -0.91 16 7 C -0.07 -0.60 0.55 -154.09 -0.09 -0.69 16 8 C -0.12 -1.12 4.45 -24.88 -0.11 -1.23 16 9 C 0.14 1.72 3.44 -66.32 -0.23 1.49 16 10 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 11 C -0.17 -2.23 8.71 37.16 0.32 -1.91 16 12 N -0.62 -9.18 3.25 -163.22 -0.53 -9.71 16 13 C 0.55 10.75 7.65 -10.98 -0.08 10.66 16 14 O -0.51 -11.75 13.52 5.56 0.08 -11.67 16 15 C -0.15 -3.08 5.35 36.01 0.19 -2.89 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.11 1.30 5.67 -3.34 -0.02 1.28 16 26 C -0.10 -0.85 4.74 -26.99 -0.13 -0.98 16 27 C 0.05 0.37 4.69 -3.76 -0.02 0.35 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.07 0.38 6.19 -51.93 -0.32 0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.20 8.08 -51.93 -0.42 -0.22 16 35 H 0.03 0.25 7.52 -51.93 -0.39 -0.14 16 36 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.63 6.23 -51.93 -0.32 0.31 16 40 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 41 H 0.09 1.53 5.89 -51.93 -0.31 1.23 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 45 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 48 H 0.07 0.79 7.83 -51.93 -0.41 0.39 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.63 7.41 -51.93 -0.38 0.24 16 51 H 0.08 0.56 5.77 -51.93 -0.30 0.26 16 52 H 0.03 0.26 6.46 -51.93 -0.34 -0.08 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -33.11 403.44 -11.33 -44.44 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -9.44 Total: -2.65 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.10 Total: -8.40 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.92 Total: -40.47 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.11 -11.33 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691274770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.795 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds