Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47088 * 2 1 4 4 N 1.46899 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.46863 * 111.00003 * 169.99775 * 4 3 2 6 6 C 1.53183 * 109.43042 * 173.48514 * 5 4 3 7 7 C 1.52332 * 109.33833 * 57.94685 * 6 5 4 8 8 C 1.54487 * 110.23034 * 66.57951 * 7 6 5 9 9 C 1.55026 * 101.52066 * 153.37706 * 8 7 6 10 10 H 1.09005 * 110.35012 * 82.52597 * 9 8 7 11 11 C 1.53001 * 110.44599 * 204.75904 * 9 8 7 12 12 N 1.47481 * 104.90782 * 323.66348 * 9 8 7 13 13 C 1.34777 * 125.66483 * 204.04180 * 12 9 8 14 14 O 1.21280 * 119.99844 * 359.97438 * 13 12 9 15 15 C 1.50701 * 120.00101 * 179.97438 * 13 12 9 16 16 S 1.80992 * 109.46935 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99945 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00027 * 359.97438 * 17 16 15 19 19 C 1.38804 * 120.00244 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47522 * 89.99792 * 21 19 17 23 23 H 1.48509 * 109.46884 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47303 * 329.99412 * 21 19 17 25 25 C 1.47194 * 108.67524 * 24.01144 * 12 9 8 26 26 C 1.52310 * 110.94894 * 304.18036 * 7 6 5 27 27 C 1.46849 * 111.00377 * 45.60533 * 4 3 2 28 28 H 1.08993 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47352 * 300.00598 * 1 2 3 30 30 H 1.09007 * 109.47281 * 60.00119 * 1 2 3 31 31 H 1.08994 * 109.47224 * 239.99682 * 2 1 3 32 32 H 1.09005 * 109.47045 * 119.99402 * 2 1 3 33 33 H 1.08994 * 109.47348 * 59.99758 * 3 2 1 34 34 H 1.09005 * 109.46689 * 299.99620 * 3 2 1 35 35 H 1.09002 * 109.47973 * 293.47576 * 5 4 3 36 36 H 1.08995 * 109.48151 * 53.49523 * 5 4 3 37 37 H 1.08998 * 109.49629 * 177.92447 * 6 5 4 38 38 H 1.09008 * 109.49353 * 297.99669 * 6 5 4 39 39 H 1.08995 * 111.01843 * 271.44436 * 8 7 6 40 40 H 1.09005 * 111.01482 * 35.32137 * 8 7 6 41 41 H 1.08996 * 109.47477 * 176.99248 * 11 9 8 42 42 H 1.08999 * 109.47465 * 296.99586 * 11 9 8 43 43 H 1.09009 * 109.47053 * 56.99098 * 11 9 8 44 44 H 1.08999 * 109.47125 * 300.00206 * 15 13 12 45 45 H 1.09004 * 109.47083 * 60.00142 * 15 13 12 46 46 H 0.97005 * 120.00093 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.90890 * 239.10560 * 25 12 9 48 48 H 1.08998 * 110.07475 * 117.92238 * 25 12 9 49 49 H 1.09001 * 109.49015 * 295.85336 * 26 7 6 50 50 H 1.08998 * 109.49266 * 175.78199 * 26 7 6 51 51 H 1.09002 * 109.47847 * 306.49649 * 27 4 3 52 52 H 1.09006 * 109.47691 * 66.50604 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7928 -0.2388 6 6 5.5578 2.7832 -0.0713 7 6 6.1654 1.7758 -1.0390 8 6 5.9597 2.2442 -2.4967 9 6 7.1548 1.5636 -3.2122 10 1 6.9128 0.5284 -3.4530 11 6 7.5249 2.3317 -4.4826 12 7 8.2613 1.6189 -2.2387 13 6 9.5746 1.5788 -2.5387 14 8 9.9301 1.4895 -3.6948 15 6 10.6014 1.6450 -1.4376 16 16 12.2613 1.5704 -2.1554 17 6 13.2333 1.6631 -0.6887 18 1 12.7511 1.7398 0.2747 19 6 14.6186 1.6387 -0.7714 20 7 15.2062 1.5458 -1.9456 21 14 15.6490 1.7363 0.7836 22 1 15.9035 0.3659 1.2957 23 1 16.9427 2.3992 0.4793 24 1 14.9203 2.5217 1.8119 25 6 7.6931 1.7258 -0.8850 26 6 5.5575 0.3936 -0.8391 27 6 4.0349 0.4835 -0.9806 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.7829 3.1079 -1.2513 36 1 3.5951 3.4861 0.4779 37 1 5.9534 3.7763 -0.2838 38 1 5.8095 2.5023 0.9515 39 1 5.0103 1.8841 -2.8928 40 1 6.0260 3.3297 -2.5715 41 1 8.3988 1.8717 -4.9438 42 1 6.6885 2.3036 -5.1810 43 1 7.7511 3.3673 -4.2282 44 1 10.4852 2.5791 -0.8881 45 1 10.4607 0.8041 -0.7585 46 1 16.1744 1.5284 -2.0034 47 1 8.0478 2.6377 -0.4046 48 1 7.9781 0.8581 -0.2901 49 1 5.8093 0.0260 0.1557 50 1 5.9529 -0.2898 -1.5906 51 1 3.5946 -0.4974 -0.8016 52 1 3.7823 0.8170 -1.9871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691274770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -61.835788 kcal Electronic energy + Delta-G solvation = -28237.068607 eV Core-core repulsion = 24554.177819 eV Total energy + Delta-G solvation = -3682.890789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88855 -40.13411 -38.22177 -35.46193 -34.59759 -33.38428 -33.03887 -31.85471 -30.28145 -28.80160 -27.67181 -27.14682 -25.73494 -24.60377 -23.37964 -22.71041 -21.41097 -20.45100 -19.46283 -19.36626 -17.98559 -17.31322 -16.94487 -16.89058 -16.49131 -16.24442 -16.02207 -15.74078 -15.37803 -15.25542 -14.95763 -14.68802 -14.41657 -14.31216 -14.14210 -13.76620 -13.73956 -13.49380 -13.25346 -13.16191 -13.13181 -12.91154 -12.86512 -12.79250 -12.61494 -12.46776 -12.30604 -12.18847 -12.06243 -11.85561 -11.73691 -11.60376 -11.41297 -11.15347 -11.12638 -11.01697 -10.59273 -10.29586 -9.67171 -9.13961 -8.68533 -8.35646 -6.14070 1.23697 1.41694 1.44278 1.55523 1.58984 2.09648 2.26547 2.98297 2.98694 3.21340 3.38209 3.47389 3.66379 3.88162 3.99378 4.04396 4.07389 4.14666 4.21617 4.22651 4.32718 4.39157 4.43403 4.45806 4.48366 4.49357 4.59603 4.64722 4.68554 4.73542 4.76102 4.78455 4.83262 4.90091 4.91121 4.95979 5.04302 5.12240 5.16354 5.19578 5.24285 5.26717 5.32817 5.37282 5.40373 5.41753 5.46137 5.57756 6.18623 6.22409 6.23955 6.43482 7.05340 7.16663 8.73610 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.002246 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.346801 B =12463.451087 C =13316.695109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.057 3.943 4 N -0.548 5.548 5 C 0.060 3.940 6 C -0.096 4.096 7 C -0.057 4.057 8 C -0.108 4.108 9 C 0.132 3.868 10 H 0.074 0.926 11 C -0.161 4.161 12 N -0.612 5.612 13 C 0.547 3.453 14 O -0.557 6.557 15 C -0.121 4.121 16 S -0.146 6.146 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.258 1.258 25 C 0.104 3.896 26 C -0.100 4.100 27 C 0.054 3.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.271 0.729 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.087 0.913 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.325 0.469 6.113 32.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.070 4.070 4 N -0.273 5.273 5 C -0.067 4.067 6 C -0.134 4.134 7 C -0.058 4.058 8 C -0.145 4.145 9 C 0.030 3.970 10 H 0.092 0.908 11 C -0.219 4.219 12 N -0.348 5.348 13 C 0.335 3.665 14 O -0.435 6.435 15 C -0.272 4.272 16 S 0.081 5.919 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.018 4.018 26 C -0.138 4.138 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.105 0.895 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -31.425 0.187 4.758 31.784 hybrid contribution 0.538 0.338 0.996 1.181 sum -30.887 0.524 5.754 31.423 Atomic orbital electron populations 1.21721 0.94920 1.02100 1.02000 1.21672 0.96255 0.96082 1.02404 1.22159 0.86499 0.97501 1.00852 1.61954 1.07698 1.07337 1.50284 1.22076 0.94712 0.89861 1.00076 1.21451 0.94580 0.98149 0.99244 1.21014 0.91905 0.97178 0.95715 1.22922 0.96944 1.00861 0.93809 1.22074 0.85911 0.99693 0.89358 0.90771 1.22091 1.02593 0.99695 0.97473 1.48568 1.03754 1.72827 1.09613 1.19676 0.82183 0.75603 0.89047 1.90636 1.80203 1.50616 1.22071 1.23321 0.97410 1.05908 1.00573 1.85522 0.95490 1.96558 1.14358 1.23187 0.94159 1.58650 0.93468 0.90094 1.26135 0.98274 0.93722 1.00991 1.70181 1.10798 1.47765 1.25942 0.84952 0.77064 0.78899 0.77053 1.19238 1.20171 1.18213 1.22277 0.94017 1.02512 0.83044 1.21479 0.94854 0.94887 1.02541 1.22234 0.94420 0.97286 0.93419 0.92259 0.92412 0.92667 0.91639 0.91686 0.90587 0.94882 0.94413 0.90027 0.90554 0.90728 0.88271 0.90114 0.92884 0.89750 0.93592 0.88049 0.88033 0.91956 0.90721 0.90813 0.90917 0.91657 0.89514 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.13 -1.18 5.18 30.59 0.16 -1.02 16 3 C 0.06 0.59 5.27 86.30 0.46 1.04 16 4 N -0.55 -6.71 4.79 -895.71 -4.29 -11.00 16 5 C 0.06 0.69 5.26 86.37 0.45 1.14 16 6 C -0.10 -1.22 4.72 30.43 0.14 -1.08 16 7 C -0.06 -0.87 0.55 -51.91 -0.03 -0.90 16 8 C -0.11 -1.68 4.45 31.79 0.14 -1.54 16 9 C 0.13 3.10 3.44 45.50 0.16 3.26 16 10 H 0.07 1.71 7.70 -2.38 -0.02 1.70 16 11 C -0.16 -4.27 8.71 71.98 0.63 -3.65 16 12 N -0.61 -17.65 3.25 -788.70 -2.56 -20.21 16 13 C 0.55 21.70 7.65 87.66 0.67 22.37 16 14 O -0.56 -26.59 13.52 -3.03 -0.04 -26.63 16 15 C -0.12 -5.11 5.35 71.24 0.38 -4.73 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 17 C -0.55 -31.83 9.50 67.96 0.65 -31.19 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 21 Si 1.00 44.10 29.55 68.60 2.03 46.12 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.10 2.20 5.67 86.46 0.49 2.69 16 26 C -0.10 -1.43 4.74 30.43 0.14 -1.28 16 27 C 0.05 0.65 4.69 86.37 0.41 1.05 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.07 0.61 6.19 -2.39 -0.01 0.60 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.34 8.08 -2.38 -0.02 0.32 16 35 H 0.04 0.42 7.52 -2.39 -0.02 0.40 16 36 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 37 H 0.08 0.93 8.06 -2.39 -0.02 0.91 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.10 1.23 6.23 -2.39 -0.01 1.21 16 40 H 0.08 1.27 7.87 -2.38 -0.02 1.25 16 41 H 0.05 1.85 5.89 -2.39 -0.01 1.84 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 46 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 47 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 48 H 0.07 1.54 7.83 -2.39 -0.02 1.52 16 49 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.02 7.41 -2.39 -0.02 1.00 16 51 H 0.09 0.98 5.77 -2.39 -0.01 0.97 16 52 H 0.04 0.44 6.46 -2.38 -0.02 0.42 16 Total: -1.00 -74.24 403.44 1.16 -73.08 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.87 Total: 17.44 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 6.03 Total: -13.04 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -6.56 Total: -87.46 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.04 Total: -26.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -74.24 1.16 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691274770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.241 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds