Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 N 1.46894 * 109.47087 * 120.00297 * 2 1 3 5 5 C 1.47901 * 111.00274 * 63.35493 * 4 2 1 6 6 C 1.53989 * 107.06255 * 145.84342 * 5 4 2 7 7 C 1.54602 * 105.13666 * 358.77671 * 6 5 4 8 8 H 1.09000 * 110.71912 * 96.58033 * 7 6 5 9 9 C 1.52997 * 110.72428 * 219.68361 * 7 6 5 10 10 C 1.53043 * 109.45901 * 178.55013 * 9 7 6 11 11 C 1.53191 * 109.30977 * 181.38659 * 10 9 7 12 12 N 1.46931 * 108.77665 * 305.36067 * 11 10 9 13 13 C 1.34771 * 120.62918 * 233.58898 * 12 11 10 14 14 O 1.21284 * 120.00754 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00066 * 179.97438 * 13 12 11 16 16 S 1.80991 * 109.47508 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00202 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00136 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99974 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46945 * 59.99916 * 21 19 17 23 23 H 1.48497 * 109.47378 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47233 * 300.00440 * 21 19 17 25 25 C 1.46918 * 118.73525 * 53.86158 * 12 11 10 26 26 C 1.53046 * 109.45920 * 298.61349 * 9 7 6 27 27 C 1.48533 * 111.00036 * 180.75316 * 4 2 1 28 28 H 1.09006 * 109.46527 * 64.08499 * 1 2 3 29 29 H 1.08990 * 109.47066 * 184.08778 * 1 2 3 30 30 H 1.08997 * 109.46865 * 304.09345 * 1 2 3 31 31 H 1.09001 * 109.46795 * 240.00484 * 2 1 3 32 32 H 1.09001 * 109.46791 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47695 * 300.00186 * 3 2 1 34 34 H 1.09001 * 109.46953 * 60.00580 * 3 2 1 35 35 H 1.09001 * 109.91384 * 26.49022 * 5 4 2 36 36 H 1.09002 * 110.08433 * 265.29422 * 5 4 2 37 37 H 1.08998 * 110.31198 * 239.86201 * 6 5 4 38 38 H 1.09001 * 110.31041 * 117.68792 * 6 5 4 39 39 H 1.08998 * 109.45016 * 58.57950 * 9 7 6 40 40 H 1.08998 * 109.49706 * 61.43305 * 10 9 7 41 41 H 1.08999 * 109.49649 * 301.33232 * 10 9 7 42 42 H 1.09004 * 109.58537 * 185.57772 * 11 10 9 43 43 H 1.08996 * 109.59310 * 65.15051 * 11 10 9 44 44 H 1.08998 * 109.47133 * 300.00264 * 15 13 12 45 45 H 1.09003 * 109.46743 * 59.99607 * 15 13 12 46 46 H 0.96998 * 119.99714 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.58506 * 65.93019 * 25 12 11 48 48 H 1.09007 * 109.58845 * 186.35027 * 25 12 11 49 49 H 1.09000 * 109.49724 * 298.56661 * 26 9 7 50 50 H 1.09001 * 109.49548 * 58.66630 * 26 9 7 51 51 H 1.08997 * 110.66444 * 81.84690 * 27 4 2 52 52 H 1.08992 * 110.66784 * 318.71457 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6126 -2.1144 1.1938 6 6 2.7484 -2.9122 1.8606 7 6 3.8275 -1.8620 2.2113 8 1 3.7320 -1.5427 3.2490 9 6 5.2286 -2.4155 1.9440 10 6 6.2708 -1.3419 2.2659 11 6 7.6700 -1.8877 1.9643 12 7 7.8547 -3.1472 2.6980 13 6 8.9174 -3.3202 3.5086 14 8 9.7329 -2.4317 3.6375 15 6 9.0926 -4.6177 4.2549 16 16 10.6016 -4.5416 5.2515 17 6 10.5595 -6.1394 5.9930 18 1 9.7510 -6.8188 5.7663 19 6 11.5658 -6.5254 6.8675 20 7 12.5520 -5.6980 7.1425 21 14 11.5208 -8.2191 7.6541 22 1 11.5489 -9.2583 6.5936 23 1 12.7002 -8.3844 8.5412 24 1 10.2773 -8.3609 8.4532 25 6 6.8620 -4.2166 2.5265 26 6 5.4689 -3.6428 2.8261 27 6 3.5044 -0.6966 1.2428 28 1 -0.3632 0.4492 -0.9244 29 1 -0.3633 -1.0250 0.0733 30 1 -0.3633 0.5760 0.8510 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4712 -2.4561 0.1684 36 1 0.6886 -2.2414 1.7580 37 1 3.1503 -3.6504 1.1667 38 1 2.3871 -3.4001 2.7659 39 1 5.3124 -2.7001 0.8952 40 1 6.2040 -1.0747 3.3205 41 1 6.0849 -0.4593 1.6539 42 1 8.4209 -1.1651 2.2841 43 1 7.7683 -2.0704 0.8943 44 1 8.2347 -4.7803 4.9072 45 1 9.1682 -5.4392 3.5425 46 1 13.2550 -5.9677 7.7539 47 1 6.8957 -4.5854 1.5014 48 1 7.0795 -5.0313 3.2174 49 1 5.4096 -3.3538 3.8755 50 1 4.7121 -4.3978 2.6129 51 1 3.8802 0.2472 1.6378 52 1 3.9177 -0.8926 0.2536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716702825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -49.359004 kcal Electronic energy + Delta-G solvation = -27661.364846 eV Core-core repulsion = 23979.015092 eV Total energy + Delta-G solvation = -3682.349755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39187 -39.42240 -37.36674 -35.11051 -32.87827 -32.41966 -31.52697 -29.78679 -29.37856 -28.51376 -27.17103 -25.49706 -24.67694 -23.46254 -22.19404 -21.26122 -20.54760 -19.93544 -19.04726 -17.68976 -16.80715 -16.68212 -15.79066 -15.57332 -15.33693 -15.11076 -14.79701 -14.61639 -14.11555 -14.04675 -13.88137 -13.79110 -13.57198 -13.29205 -12.98726 -12.83974 -12.67657 -12.64846 -12.51884 -12.30259 -12.08835 -11.88136 -11.68414 -11.59554 -11.35529 -11.29849 -11.21362 -11.12863 -11.03402 -11.03130 -10.76000 -10.74210 -10.49553 -10.41219 -9.79985 -9.31190 -9.05154 -8.77448 -8.47400 -8.21442 -6.48985 -6.20529 -3.91142 2.97178 3.08588 3.23811 3.26682 3.29754 3.53722 3.62411 4.16868 4.21473 4.28401 4.41019 4.55863 4.59636 4.66310 4.78455 4.83633 4.91717 5.01936 5.03132 5.07842 5.14287 5.15873 5.19906 5.24497 5.25651 5.32146 5.39652 5.41751 5.43760 5.49407 5.52069 5.55675 5.58776 5.61924 5.68628 5.73365 5.76301 5.77900 5.81490 5.88787 5.90302 5.93878 5.97242 6.02127 6.13003 6.25953 6.54704 6.69652 6.72874 7.59228 7.61191 8.35763 8.59886 9.24465 10.86815 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.001932 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.692632 B =14490.848206 C =15243.140211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.146 4.146 4 N -0.514 5.514 5 C 0.037 3.963 6 C -0.127 4.127 7 C -0.084 4.084 8 H 0.084 0.916 9 C -0.076 4.076 10 C -0.128 4.128 11 C 0.113 3.887 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.108 3.892 26 C -0.130 4.130 27 C 0.042 3.958 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.949 8.702 -16.247 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 C -0.204 4.204 4 N -0.239 5.239 5 C -0.091 4.091 6 C -0.165 4.165 7 C -0.103 4.103 8 H 0.102 0.898 9 C -0.095 4.095 10 C -0.166 4.166 11 C -0.010 4.010 12 N -0.356 5.356 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.015 4.015 26 C -0.168 4.168 27 C -0.086 4.086 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.791 10.342 -15.516 30.228 hybrid contribution -0.783 -2.615 -0.442 2.765 sum -24.574 7.727 -15.958 30.303 Atomic orbital electron populations 1.21837 0.94246 1.02065 1.02012 1.21811 0.95905 0.95431 0.90986 1.21862 1.01143 0.95135 1.02222 1.64803 1.09107 1.12443 1.37555 1.22834 0.98970 0.87880 0.99410 1.22491 0.95264 0.97815 1.00948 1.22124 0.93573 0.94457 1.00177 0.89756 1.21166 0.93319 0.95300 0.99709 1.21980 0.94200 0.97869 1.02590 1.21498 0.97282 0.86677 0.95525 1.48099 1.24906 1.15884 1.46705 1.20325 0.80059 0.89137 0.78213 1.90686 1.42031 1.43590 1.63006 1.23550 1.07049 0.96906 1.02574 1.85400 1.22826 1.22080 1.53148 1.22819 1.12918 1.00836 1.31812 0.91020 1.24988 0.94541 0.98232 0.95797 1.70010 1.10973 1.35459 1.33818 0.86232 0.77778 0.82514 0.79020 1.19952 1.20808 1.19944 1.21798 0.87628 0.90231 1.01888 1.22064 0.96543 0.97464 1.00707 1.23270 0.87762 0.99307 0.98240 0.92387 0.92689 0.91797 0.94262 0.92553 0.92296 0.91709 0.94017 0.90541 0.91274 0.90897 0.91161 0.91216 0.90967 0.88926 0.92132 0.89314 0.89362 0.92141 0.91682 0.89224 0.91104 0.90738 0.89964 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.22 37.16 0.34 -0.51 16 2 C 0.07 0.46 2.36 -67.71 -0.16 0.30 16 3 C -0.15 -0.90 9.03 37.16 0.34 -0.57 16 4 N -0.51 -3.97 5.11 -222.51 -1.14 -5.10 16 5 C 0.04 0.26 5.43 -2.76 -0.01 0.24 16 6 C -0.13 -0.85 5.49 -25.37 -0.14 -0.99 16 7 C -0.08 -0.62 2.60 -88.76 -0.23 -0.86 16 8 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 9 C -0.08 -0.60 1.54 -90.58 -0.14 -0.74 16 10 C -0.13 -1.19 5.21 -26.61 -0.14 -1.33 16 11 C 0.11 1.36 6.43 -3.71 -0.02 1.33 16 12 N -0.62 -8.81 2.97 -172.50 -0.51 -9.33 16 13 C 0.53 10.32 7.72 -10.99 -0.08 10.23 16 14 O -0.52 -12.03 15.28 5.55 0.08 -11.95 16 15 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.11 1.17 6.37 -3.49 -0.02 1.14 16 26 C -0.13 -1.13 5.19 -26.38 -0.14 -1.27 16 27 C 0.04 0.31 3.93 -1.90 -0.01 0.30 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.32 7.12 -51.93 -0.37 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.28 7.98 -51.93 -0.41 -0.14 16 32 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.28 7.65 -51.93 -0.40 -0.12 16 36 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.07 0.44 7.61 -51.93 -0.39 0.04 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 42 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.69 7.70 -51.92 -0.40 1.29 16 45 H 0.09 1.68 7.93 -51.92 -0.41 1.27 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.53 7.12 -51.93 -0.37 0.16 16 51 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 52 H 0.04 0.33 7.90 -51.93 -0.41 -0.08 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -33.50 407.50 -11.57 -45.07 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -9.58 Total: -3.21 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.06 Total: -8.62 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.91 Total: -39.94 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.50 -11.57 -45.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716702825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.293 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds