Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46998 * 2 1 4 4 N 1.46894 * 109.47087 * 120.00297 * 2 1 3 5 5 C 1.47901 * 111.00274 * 63.35493 * 4 2 1 6 6 C 1.53989 * 107.06255 * 145.84342 * 5 4 2 7 7 C 1.54602 * 105.13666 * 358.77671 * 6 5 4 8 8 H 1.09000 * 110.71912 * 96.58033 * 7 6 5 9 9 C 1.52997 * 110.72428 * 219.68361 * 7 6 5 10 10 C 1.53043 * 109.45901 * 178.55013 * 9 7 6 11 11 C 1.53191 * 109.30977 * 181.38659 * 10 9 7 12 12 N 1.46931 * 108.77665 * 305.36067 * 11 10 9 13 13 C 1.34771 * 120.62918 * 233.58898 * 12 11 10 14 14 O 1.21284 * 120.00754 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00066 * 179.97438 * 13 12 11 16 16 S 1.80991 * 109.47508 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00202 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00136 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99974 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46945 * 59.99916 * 21 19 17 23 23 H 1.48497 * 109.47378 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47233 * 300.00440 * 21 19 17 25 25 C 1.46918 * 118.73525 * 53.86158 * 12 11 10 26 26 C 1.53046 * 109.45920 * 298.61349 * 9 7 6 27 27 C 1.48533 * 111.00036 * 180.75316 * 4 2 1 28 28 H 1.09006 * 109.46527 * 64.08499 * 1 2 3 29 29 H 1.08990 * 109.47066 * 184.08778 * 1 2 3 30 30 H 1.08997 * 109.46865 * 304.09345 * 1 2 3 31 31 H 1.09001 * 109.46795 * 240.00484 * 2 1 3 32 32 H 1.09001 * 109.46791 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47695 * 300.00186 * 3 2 1 34 34 H 1.09001 * 109.46953 * 60.00580 * 3 2 1 35 35 H 1.09001 * 109.91384 * 26.49022 * 5 4 2 36 36 H 1.09002 * 110.08433 * 265.29422 * 5 4 2 37 37 H 1.08998 * 110.31198 * 239.86201 * 6 5 4 38 38 H 1.09001 * 110.31041 * 117.68792 * 6 5 4 39 39 H 1.08998 * 109.45016 * 58.57950 * 9 7 6 40 40 H 1.08998 * 109.49706 * 61.43305 * 10 9 7 41 41 H 1.08999 * 109.49649 * 301.33232 * 10 9 7 42 42 H 1.09004 * 109.58537 * 185.57772 * 11 10 9 43 43 H 1.08996 * 109.59310 * 65.15051 * 11 10 9 44 44 H 1.08998 * 109.47133 * 300.00264 * 15 13 12 45 45 H 1.09003 * 109.46743 * 59.99607 * 15 13 12 46 46 H 0.96998 * 119.99714 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.58506 * 65.93019 * 25 12 11 48 48 H 1.09007 * 109.58845 * 186.35027 * 25 12 11 49 49 H 1.09000 * 109.49724 * 298.56661 * 26 9 7 50 50 H 1.09001 * 109.49548 * 58.66630 * 26 9 7 51 51 H 1.08997 * 110.66444 * 81.84690 * 27 4 2 52 52 H 1.08992 * 110.66784 * 318.71457 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6126 -2.1144 1.1938 6 6 2.7484 -2.9122 1.8606 7 6 3.8275 -1.8620 2.2113 8 1 3.7320 -1.5427 3.2490 9 6 5.2286 -2.4155 1.9440 10 6 6.2708 -1.3419 2.2659 11 6 7.6700 -1.8877 1.9643 12 7 7.8547 -3.1472 2.6980 13 6 8.9174 -3.3202 3.5086 14 8 9.7329 -2.4317 3.6375 15 6 9.0926 -4.6177 4.2549 16 16 10.6016 -4.5416 5.2515 17 6 10.5595 -6.1394 5.9930 18 1 9.7510 -6.8188 5.7663 19 6 11.5658 -6.5254 6.8675 20 7 12.5520 -5.6980 7.1425 21 14 11.5208 -8.2191 7.6541 22 1 11.5489 -9.2583 6.5936 23 1 12.7002 -8.3844 8.5412 24 1 10.2773 -8.3609 8.4532 25 6 6.8620 -4.2166 2.5265 26 6 5.4689 -3.6428 2.8261 27 6 3.5044 -0.6966 1.2428 28 1 -0.3632 0.4492 -0.9244 29 1 -0.3633 -1.0250 0.0733 30 1 -0.3633 0.5760 0.8510 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4712 -2.4561 0.1684 36 1 0.6886 -2.2414 1.7580 37 1 3.1503 -3.6504 1.1667 38 1 2.3871 -3.4001 2.7659 39 1 5.3124 -2.7001 0.8952 40 1 6.2040 -1.0747 3.3205 41 1 6.0849 -0.4593 1.6539 42 1 8.4209 -1.1651 2.2841 43 1 7.7683 -2.0704 0.8943 44 1 8.2347 -4.7803 4.9072 45 1 9.1682 -5.4392 3.5425 46 1 13.2550 -5.9677 7.7539 47 1 6.8957 -4.5854 1.5014 48 1 7.0795 -5.0313 3.2174 49 1 5.4096 -3.3538 3.8755 50 1 4.7121 -4.3978 2.6129 51 1 3.8802 0.2472 1.6378 52 1 3.9177 -0.8926 0.2536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716702825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -69.907228 kcal Electronic energy + Delta-G solvation = -27662.255884 eV Core-core repulsion = 23979.015092 eV Total energy + Delta-G solvation = -3683.240793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33200 -40.35321 -38.41052 -35.91466 -34.58522 -33.76596 -32.44901 -30.82166 -30.06260 -29.49028 -27.77907 -27.60835 -25.55852 -24.31920 -22.83523 -22.15405 -21.12410 -20.59256 -20.31466 -19.49541 -18.16517 -17.31258 -16.92434 -16.86031 -16.63751 -16.42158 -15.88716 -15.66098 -15.20340 -15.03633 -14.78692 -14.61819 -14.49100 -14.30128 -14.15012 -14.07921 -13.54878 -13.38242 -13.24603 -13.16863 -13.13742 -12.97207 -12.86492 -12.75593 -12.61258 -12.32111 -12.23863 -12.08445 -11.88272 -11.80419 -11.72877 -11.66700 -11.34497 -11.28173 -11.14932 -11.12766 -10.80466 -10.26568 -9.65233 -9.31098 -8.67811 -8.34246 -6.13087 1.25740 1.44099 1.46045 1.55766 1.57924 2.13178 2.27783 2.99634 3.01004 3.25528 3.55438 3.64890 3.75630 3.76503 3.92542 4.05899 4.07436 4.16561 4.23974 4.26709 4.28081 4.39589 4.42059 4.43646 4.45164 4.49147 4.53894 4.70442 4.72563 4.80644 4.82287 4.86556 4.92492 4.94550 4.95883 4.99032 5.01491 5.02847 5.11668 5.12524 5.16017 5.26233 5.28338 5.35433 5.41161 5.41270 5.56824 5.62420 6.02017 6.19527 6.20686 6.31251 7.06521 7.15503 8.74758 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.001932 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.692632 B =14490.848206 C =15243.140211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 C -0.144 4.144 4 N -0.528 5.528 5 C 0.037 3.963 6 C -0.123 4.123 7 C -0.078 4.078 8 H 0.070 0.930 9 C -0.067 4.067 10 C -0.119 4.119 11 C 0.109 3.891 12 N -0.606 5.606 13 C 0.531 3.469 14 O -0.570 6.570 15 C -0.123 4.123 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.099 3.901 26 C -0.123 4.123 27 C 0.044 3.956 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.099 0.901 51 H 0.077 0.923 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 6.966 -17.765 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.201 4.201 4 N -0.253 5.253 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.098 4.098 8 H 0.088 0.912 9 C -0.086 4.086 10 C -0.158 4.158 11 C -0.013 4.013 12 N -0.340 5.340 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.274 4.274 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.023 4.023 26 C -0.161 4.161 27 C -0.083 4.083 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.118 0.882 51 H 0.095 0.905 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.446 8.604 -17.071 32.632 hybrid contribution -0.096 -1.991 -0.076 1.995 sum -26.542 6.613 -17.147 32.284 Atomic orbital electron populations 1.21810 0.93727 1.02052 1.02239 1.21862 0.96349 0.95502 0.90620 1.21842 1.00992 0.94955 1.02325 1.64801 1.09251 1.13036 1.38226 1.22841 0.99034 0.87533 0.99683 1.22479 0.94763 0.97634 1.01258 1.22006 0.93479 0.94847 0.99420 0.91160 1.21102 0.92906 0.94286 1.00283 1.21917 0.92889 0.99090 1.01870 1.21697 0.98171 0.85147 0.96309 1.48137 1.23670 1.17478 1.44730 1.20145 0.81014 0.88079 0.78930 1.90667 1.44326 1.44820 1.65090 1.23362 1.03344 0.98569 1.02087 1.85596 1.28285 1.23326 1.55447 1.23159 1.13474 1.00756 1.32022 0.89877 1.26145 0.93852 1.02942 0.96226 1.70184 1.11922 1.37955 1.34695 0.84999 0.78208 0.76614 0.78144 1.18566 1.20408 1.18615 1.22144 0.87586 0.89150 1.03415 1.22035 0.95717 0.98377 1.00017 1.23227 0.87784 0.98997 0.98316 0.91342 0.92659 0.92535 0.94237 0.92745 0.91269 0.92528 0.93565 0.90722 0.90174 0.90736 0.89628 0.93044 0.89068 0.91650 0.89724 0.87649 0.87491 0.91999 0.89044 0.89586 0.92610 0.88221 0.90505 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.22 71.98 0.66 -0.78 16 2 C 0.07 0.77 2.36 44.92 0.11 0.88 16 3 C -0.14 -1.58 9.03 71.98 0.65 -0.93 16 4 N -0.53 -7.23 5.11 -857.88 -4.38 -11.61 16 5 C 0.04 0.43 5.43 86.44 0.47 0.90 16 6 C -0.12 -1.30 5.49 31.47 0.17 -1.13 16 7 C -0.08 -0.98 2.60 -9.59 -0.02 -1.01 16 8 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 9 C -0.07 -0.86 1.54 -10.76 -0.02 -0.88 16 10 C -0.12 -2.03 5.21 30.67 0.16 -1.87 16 11 C 0.11 2.49 6.43 86.36 0.56 3.05 16 12 N -0.61 -16.52 2.97 -818.06 -2.43 -18.95 16 13 C 0.53 20.65 7.72 87.66 0.68 21.33 16 14 O -0.57 -27.57 15.28 -3.04 -0.05 -27.62 16 15 C -0.12 -5.02 4.50 71.24 0.32 -4.70 16 16 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 17 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C 0.10 1.85 6.37 86.51 0.55 2.41 16 26 C -0.12 -1.79 5.19 30.82 0.16 -1.63 16 27 C 0.04 0.56 3.93 86.65 0.34 0.90 16 28 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.56 7.12 -2.39 -0.02 0.54 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.47 7.98 -2.39 -0.02 0.45 16 32 H 0.05 0.61 6.92 -2.39 -0.02 0.59 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.50 7.65 -2.39 -0.02 0.48 16 36 H 0.07 0.89 8.11 -2.39 -0.02 0.88 16 37 H 0.08 0.69 7.61 -2.39 -0.02 0.68 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.23 7.31 -2.39 -0.02 1.22 16 42 H 0.06 1.89 7.01 -2.38 -0.02 1.87 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.11 3.93 7.70 -2.40 -0.02 3.91 16 45 H 0.11 3.95 7.93 -2.39 -0.02 3.93 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.09 1.70 5.93 -2.38 -0.01 1.69 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.10 1.02 7.12 -2.39 -0.02 1.00 16 51 H 0.08 1.06 7.52 -2.39 -0.02 1.04 16 52 H 0.05 0.59 7.90 -2.39 -0.02 0.57 16 Total: -1.00 -75.75 407.50 1.06 -74.69 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.87 Total: 16.84 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.90 Total: -13.03 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -6.52 Total: -86.68 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -75.75 1.06 -74.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716702825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.783 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds