Wall clock time and date at job start Sat Apr 11 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 H 1.08999 * 109.47431 * 54.99474 * 3 2 1 5 5 C 1.53000 * 109.46645 * 294.99876 * 3 2 1 6 6 C 1.52999 * 109.47237 * 175.00011 * 3 2 1 7 7 N 1.46893 * 109.47368 * 181.67069 * 6 3 2 8 8 C 1.47994 * 111.00516 * 176.54411 * 7 6 3 9 9 C 1.55209 * 104.99057 * 213.96606 * 8 7 6 10 10 C 1.53483 * 101.46492 * 35.39974 * 9 8 7 11 11 C 1.53479 * 111.79626 * 88.12773 * 10 9 8 12 12 C 1.54634 * 102.74430 * 154.33531 * 11 10 9 13 13 N 1.47152 * 107.34449 * 339.33343 * 12 11 10 14 14 C 1.34771 * 125.59922 * 179.10161 * 13 12 11 15 15 O 1.21283 * 120.00232 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00005 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00159 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99866 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00173 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46974 * 90.00561 * 22 20 18 24 24 H 1.48500 * 109.46964 * 210.00084 * 22 20 18 25 25 H 1.48494 * 109.47093 * 330.00230 * 22 20 18 26 26 C 1.47758 * 108.79927 * 359.08829 * 13 12 11 27 27 C 1.47872 * 110.99958 * 55.76920 * 7 6 3 28 28 H 1.08995 * 109.47275 * 300.00213 * 1 2 3 29 29 H 1.09000 * 109.47060 * 60.00522 * 1 2 3 30 30 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47275 * 239.99787 * 2 1 3 32 32 H 1.09000 * 109.47060 * 119.99478 * 2 1 3 33 33 H 1.08995 * 109.47351 * 65.86442 * 5 3 2 34 34 H 1.09007 * 109.47120 * 185.86760 * 5 3 2 35 35 H 1.09003 * 109.47413 * 305.86707 * 5 3 2 36 36 H 1.09006 * 109.47240 * 61.67094 * 6 3 2 37 37 H 1.09003 * 109.47166 * 301.67659 * 6 3 2 38 38 H 1.08999 * 110.33476 * 332.84395 * 8 7 6 39 39 H 1.09004 * 110.33815 * 95.08223 * 8 7 6 40 40 H 1.09003 * 111.02277 * 153.45060 * 9 8 7 41 41 H 1.09006 * 111.02386 * 277.35230 * 9 8 7 42 42 H 1.09000 * 110.75819 * 272.64755 * 11 10 9 43 43 H 1.09000 * 110.76050 * 35.83738 * 11 10 9 44 44 H 1.08997 * 109.86936 * 98.77526 * 12 11 10 45 45 H 1.09007 * 109.86782 * 219.89530 * 12 11 10 46 46 H 1.09001 * 109.47128 * 299.99135 * 16 14 13 47 47 H 1.08992 * 109.47508 * 59.99727 * 16 14 13 48 48 H 0.96998 * 120.00066 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.39214 * 263.54681 * 26 13 12 50 50 H 1.08994 * 110.39537 * 141.15242 * 26 13 12 51 51 H 1.09000 * 110.00175 * 243.71122 * 27 7 6 52 52 H 1.09003 * 110.00022 * 5.06148 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0512 2.8299 0.1660 8 6 5.5163 2.8721 0.3703 9 6 5.7659 4.1429 1.2257 10 6 4.5234 4.1532 2.1266 11 6 4.7398 3.3326 3.4054 12 6 3.7506 3.9835 4.3999 13 7 3.4428 5.3307 3.8942 14 6 2.6028 6.2124 4.4714 15 8 2.4237 7.3000 3.9655 16 6 1.8861 5.8470 5.7457 17 16 0.8401 7.2291 6.2672 18 6 0.1418 6.5478 7.7345 19 1 0.4110 5.5498 8.0476 20 6 -0.7541 7.2936 8.4878 21 7 -1.0825 8.5097 8.1059 22 14 -1.4949 6.5709 10.0429 23 1 -0.6287 6.9003 11.2032 24 1 -2.8487 7.1421 10.2580 25 1 -1.5964 5.0960 9.9038 26 6 4.2063 5.5580 2.6497 27 6 3.4029 3.5876 1.2578 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5499 2.2184 -1.3485 34 1 2.0859 3.1179 -1.3535 35 1 1.9815 1.5303 -2.1517 36 1 4.0008 0.9311 -0.7314 37 1 3.8545 0.9308 1.0425 38 1 5.8498 1.9833 0.9061 39 1 6.0303 2.9531 -0.5875 40 1 6.6766 4.0440 1.8165 41 1 5.8027 5.0346 0.5998 42 1 4.4877 2.2852 3.2395 43 1 5.7666 3.4301 3.7579 44 1 2.8374 3.3910 4.4553 45 1 4.2093 4.0538 5.3862 46 1 1.2666 4.9666 5.5745 47 1 2.6171 5.6310 6.5247 48 1 -1.7089 9.0308 8.6322 49 1 5.1272 6.1008 2.8629 50 1 3.6007 6.1048 1.9271 51 1 2.8054 4.4000 0.8442 52 1 2.7719 2.9237 1.8488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716728957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:03 Heat of formation + Delta-G solvation = -44.024700 kcal Electronic energy + Delta-G solvation = -28128.870888 eV Core-core repulsion = 24446.752446 eV Total energy + Delta-G solvation = -3682.118442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90456 -38.93761 -37.35510 -35.74098 -32.57784 -32.42528 -30.67822 -29.81023 -29.18889 -28.77367 -26.84143 -25.55306 -25.04718 -23.40959 -22.91292 -21.37690 -20.35945 -19.41656 -19.13312 -17.66775 -16.60300 -16.29966 -16.04757 -15.90596 -15.18438 -14.98481 -14.87746 -14.80048 -14.43243 -13.92670 -13.83266 -13.71067 -13.46187 -13.12887 -12.97788 -12.72044 -12.66022 -12.55073 -12.37170 -12.19661 -12.14520 -11.96769 -11.88106 -11.70761 -11.42563 -11.11371 -11.06332 -11.02465 -11.00076 -10.87201 -10.83097 -10.75618 -10.68681 -10.64047 -9.81219 -9.39302 -9.06460 -8.56891 -8.48031 -8.22874 -6.49855 -6.21360 -3.91987 2.91891 3.08057 3.22189 3.25975 3.30305 3.61506 3.63949 4.07274 4.11213 4.20703 4.30353 4.48709 4.59921 4.70284 4.76842 4.87591 4.93541 4.99793 5.01255 5.05174 5.13698 5.17437 5.25531 5.29885 5.32845 5.41205 5.43524 5.46562 5.48617 5.49829 5.53738 5.59040 5.63579 5.71347 5.72268 5.74043 5.78483 5.81618 5.83051 5.89248 5.92655 5.94040 5.99053 6.14001 6.14387 6.22963 6.41814 6.66295 6.79411 7.59542 7.68471 8.35382 8.57285 9.23793 10.86095 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.002558 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.266593 B =10943.258621 C =12289.938385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.140 4.140 6 C 0.056 3.944 7 N -0.525 5.525 8 C 0.044 3.956 9 C -0.113 4.113 10 C -0.094 4.094 11 C -0.117 4.117 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.548 3.452 15 O -0.515 6.515 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.126 3.874 27 C 0.058 3.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.354 -18.514 -17.093 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.114 4.114 4 H 0.091 0.909 5 C -0.197 4.197 6 C -0.072 4.072 7 N -0.249 5.249 8 C -0.084 4.084 9 C -0.151 4.151 10 C -0.096 4.096 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.337 3.663 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.003 3.997 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.777 -16.453 -18.246 27.692 hybrid contribution -0.058 -2.240 2.481 3.343 sum 12.719 -18.693 -15.764 27.563 Atomic orbital electron populations 1.21802 0.95610 1.01490 1.02213 1.21543 0.96234 0.96126 1.01688 1.21306 0.94239 0.96204 0.99632 0.90894 1.21759 1.00558 1.01416 0.95944 1.22328 0.95433 0.89139 1.00307 1.63815 1.04332 1.12627 1.44092 1.23089 0.88629 0.97052 0.99630 1.22490 0.96517 0.98737 0.97356 1.21817 0.96593 0.95905 0.95264 1.22518 0.99867 0.99074 0.93979 1.22031 0.98689 0.83605 0.97672 1.48605 1.45686 1.15856 1.26219 1.20006 0.77706 0.83299 0.85303 1.90712 1.62592 1.21652 1.63980 1.23503 1.02828 1.06887 0.96466 1.85402 1.51642 1.16015 1.30330 1.22853 1.31068 1.03967 1.10406 0.90980 1.24991 0.95688 0.94735 0.98162 1.70019 1.32523 1.09234 1.38491 0.86170 0.78398 0.79121 0.81825 1.20272 1.20733 1.19699 1.21909 0.96073 0.95098 0.86656 1.22681 0.95508 0.98132 0.90647 0.92629 0.92379 0.92932 0.92076 0.92316 0.93157 0.91345 0.93262 0.90857 0.95009 0.93617 0.90204 0.90369 0.90039 0.90461 0.90204 0.91448 0.91230 0.89412 0.89400 0.92178 0.91485 0.90100 0.89958 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.96 16 3 C -0.10 -0.74 2.12 -90.62 -0.19 -0.93 16 4 H 0.07 0.67 6.23 -51.93 -0.32 0.34 16 5 C -0.14 -1.14 8.74 37.16 0.32 -0.82 16 6 C 0.06 0.42 4.22 -3.83 -0.02 0.40 16 7 N -0.52 -4.35 4.49 -231.63 -1.04 -5.39 16 8 C 0.04 0.30 6.70 -2.05 -0.01 0.29 16 9 C -0.11 -0.80 6.05 -25.31 -0.15 -0.95 16 10 C -0.09 -0.83 0.61 -154.08 -0.09 -0.92 16 11 C -0.12 -0.94 5.79 -25.62 -0.15 -1.09 16 12 C 0.10 1.12 6.48 -2.83 -0.02 1.11 16 13 N -0.63 -9.10 3.34 -171.00 -0.57 -9.67 16 14 C 0.55 10.76 7.87 -10.99 -0.09 10.67 16 15 O -0.52 -12.14 16.14 5.55 0.09 -12.05 16 16 C -0.15 -3.05 5.35 36.01 0.19 -2.86 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.13 1.52 5.91 -3.24 -0.02 1.50 16 27 C 0.06 0.54 5.27 -3.47 -0.02 0.52 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 6.70 -51.93 -0.35 0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.03 0.24 8.01 -51.93 -0.42 -0.18 16 38 H 0.05 0.30 7.72 -51.93 -0.40 -0.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.47 7.76 -51.93 -0.40 0.07 16 41 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.08 0.56 7.94 -51.93 -0.41 0.14 16 43 H 0.08 0.57 7.80 -51.93 -0.40 0.16 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 47 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 50 H 0.08 1.09 7.60 -51.93 -0.39 0.70 16 51 H 0.08 0.92 7.58 -51.93 -0.39 0.52 16 52 H 0.06 0.61 5.78 -51.93 -0.30 0.31 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -33.45 413.07 -11.20 -44.65 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -9.57 Total: -2.94 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.17 Total: -7.83 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.88 Total: -40.64 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.45 -11.20 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716728957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.627 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds