Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 H 1.08999 * 109.47431 * 54.99474 * 3 2 1 5 5 C 1.53000 * 109.46645 * 294.99876 * 3 2 1 6 6 C 1.52999 * 109.47237 * 175.00011 * 3 2 1 7 7 N 1.46893 * 109.47368 * 181.67069 * 6 3 2 8 8 C 1.47994 * 111.00516 * 176.54411 * 7 6 3 9 9 C 1.55209 * 104.99057 * 213.96606 * 8 7 6 10 10 C 1.53483 * 101.46492 * 35.39974 * 9 8 7 11 11 C 1.53479 * 111.79626 * 88.12773 * 10 9 8 12 12 C 1.54634 * 102.74430 * 154.33531 * 11 10 9 13 13 N 1.47152 * 107.34449 * 339.33343 * 12 11 10 14 14 C 1.34771 * 125.59922 * 179.10161 * 13 12 11 15 15 O 1.21283 * 120.00232 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00005 * 359.97438 * 14 13 12 17 17 S 1.81000 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00159 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99866 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00173 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46974 * 90.00561 * 22 20 18 24 24 H 1.48500 * 109.46964 * 210.00084 * 22 20 18 25 25 H 1.48494 * 109.47093 * 330.00230 * 22 20 18 26 26 C 1.47758 * 108.79927 * 359.08829 * 13 12 11 27 27 C 1.47872 * 110.99958 * 55.76920 * 7 6 3 28 28 H 1.08995 * 109.47275 * 300.00213 * 1 2 3 29 29 H 1.09000 * 109.47060 * 60.00522 * 1 2 3 30 30 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47275 * 239.99787 * 2 1 3 32 32 H 1.09000 * 109.47060 * 119.99478 * 2 1 3 33 33 H 1.08995 * 109.47351 * 65.86442 * 5 3 2 34 34 H 1.09007 * 109.47120 * 185.86760 * 5 3 2 35 35 H 1.09003 * 109.47413 * 305.86707 * 5 3 2 36 36 H 1.09006 * 109.47240 * 61.67094 * 6 3 2 37 37 H 1.09003 * 109.47166 * 301.67659 * 6 3 2 38 38 H 1.08999 * 110.33476 * 332.84395 * 8 7 6 39 39 H 1.09004 * 110.33815 * 95.08223 * 8 7 6 40 40 H 1.09003 * 111.02277 * 153.45060 * 9 8 7 41 41 H 1.09006 * 111.02386 * 277.35230 * 9 8 7 42 42 H 1.09000 * 110.75819 * 272.64755 * 11 10 9 43 43 H 1.09000 * 110.76050 * 35.83738 * 11 10 9 44 44 H 1.08997 * 109.86936 * 98.77526 * 12 11 10 45 45 H 1.09007 * 109.86782 * 219.89530 * 12 11 10 46 46 H 1.09001 * 109.47128 * 299.99135 * 16 14 13 47 47 H 1.08992 * 109.47508 * 59.99727 * 16 14 13 48 48 H 0.96998 * 120.00066 * 179.97438 * 21 20 18 49 49 H 1.09001 * 110.39214 * 263.54681 * 26 13 12 50 50 H 1.08994 * 110.39537 * 141.15242 * 26 13 12 51 51 H 1.09000 * 110.00175 * 243.71122 * 27 7 6 52 52 H 1.09003 * 110.00022 * 5.06148 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0512 2.8299 0.1660 8 6 5.5163 2.8721 0.3703 9 6 5.7659 4.1429 1.2257 10 6 4.5234 4.1532 2.1266 11 6 4.7398 3.3326 3.4054 12 6 3.7506 3.9835 4.3999 13 7 3.4428 5.3307 3.8942 14 6 2.6028 6.2124 4.4714 15 8 2.4237 7.3000 3.9655 16 6 1.8861 5.8470 5.7457 17 16 0.8401 7.2291 6.2672 18 6 0.1418 6.5478 7.7345 19 1 0.4110 5.5498 8.0476 20 6 -0.7541 7.2936 8.4878 21 7 -1.0825 8.5097 8.1059 22 14 -1.4949 6.5709 10.0429 23 1 -0.6287 6.9003 11.2032 24 1 -2.8487 7.1421 10.2580 25 1 -1.5964 5.0960 9.9038 26 6 4.2063 5.5580 2.6497 27 6 3.4029 3.5876 1.2578 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5499 2.2184 -1.3485 34 1 2.0859 3.1179 -1.3535 35 1 1.9815 1.5303 -2.1517 36 1 4.0008 0.9311 -0.7314 37 1 3.8545 0.9308 1.0425 38 1 5.8498 1.9833 0.9061 39 1 6.0303 2.9531 -0.5875 40 1 6.6766 4.0440 1.8165 41 1 5.8027 5.0346 0.5998 42 1 4.4877 2.2852 3.2395 43 1 5.7666 3.4301 3.7579 44 1 2.8374 3.3910 4.4553 45 1 4.2093 4.0538 5.3862 46 1 1.2666 4.9666 5.5745 47 1 2.6171 5.6310 6.5247 48 1 -1.7089 9.0308 8.6322 49 1 5.1272 6.1008 2.8629 50 1 3.6007 6.1048 1.9271 51 1 2.8054 4.4000 0.8442 52 1 2.7719 2.9237 1.8488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716728957.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = -64.311105 kcal Electronic energy + Delta-G solvation = -28129.750572 eV Core-core repulsion = 24446.752446 eV Total energy + Delta-G solvation = -3682.998126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78890 -40.15280 -38.28288 -36.60286 -34.60476 -33.49986 -31.59987 -30.88511 -30.08351 -29.63942 -27.79231 -27.50768 -25.96473 -24.30486 -23.59899 -21.98974 -21.04884 -20.78041 -20.01613 -19.46028 -18.05438 -17.23910 -16.96963 -16.89879 -16.77956 -16.22611 -15.81999 -15.77801 -15.65334 -15.43162 -14.72694 -14.53271 -14.39296 -14.34425 -14.02135 -13.76098 -13.62748 -13.49757 -13.29552 -13.20387 -13.17018 -12.90393 -12.85711 -12.79238 -12.63647 -12.55165 -12.48646 -12.05157 -11.90401 -11.72272 -11.69244 -11.52568 -11.43776 -11.31559 -11.28376 -11.15814 -10.99577 -10.30873 -9.72345 -9.18262 -8.70454 -8.36221 -6.15403 1.22010 1.41637 1.43507 1.53401 1.55047 2.06342 2.25634 2.97841 3.01160 3.16125 3.35270 3.39870 3.57832 3.79760 3.85238 3.99460 4.07521 4.13375 4.16770 4.22817 4.26203 4.37614 4.40423 4.40924 4.48672 4.57082 4.62869 4.66228 4.66841 4.71051 4.79079 4.82400 4.84344 4.86550 4.93282 4.99299 5.04175 5.12400 5.15804 5.17975 5.20323 5.23196 5.28190 5.30320 5.33758 5.39640 5.52543 5.56421 6.02657 6.17993 6.19844 6.35533 7.04615 7.08180 8.73195 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.002558 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.266593 B =10943.258621 C =12289.938385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.093 4.093 4 H 0.056 0.944 5 C -0.135 4.135 6 C 0.060 3.940 7 N -0.534 5.534 8 C 0.046 3.954 9 C -0.107 4.107 10 C -0.085 4.085 11 C -0.103 4.103 12 C 0.092 3.908 13 N -0.616 5.616 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.119 4.119 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.257 1.257 26 C 0.121 3.879 27 C 0.063 3.937 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.272 0.728 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.196 -22.019 -16.563 31.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.112 4.112 4 H 0.074 0.926 5 C -0.193 4.193 6 C -0.068 4.068 7 N -0.259 5.259 8 C -0.081 4.081 9 C -0.145 4.145 10 C -0.087 4.087 11 C -0.140 4.140 12 C -0.031 4.031 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.446 6.446 16 C -0.270 4.270 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.181 1.181 26 C -0.001 4.001 27 C -0.065 4.065 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.664 -20.017 -17.739 30.502 hybrid contribution -0.564 -1.194 2.185 2.553 sum 14.100 -21.211 -15.554 29.844 Atomic orbital electron populations 1.21812 0.96068 1.01806 1.01558 1.21509 0.95796 0.95450 1.02375 1.21269 0.94817 0.96563 0.98529 0.92608 1.21705 1.00140 1.00753 0.96673 1.22315 0.94820 0.88659 1.01007 1.63777 1.05345 1.13161 1.43585 1.23137 0.87496 0.97343 1.00172 1.22496 0.96187 0.98768 0.97056 1.21744 0.97340 0.93619 0.95954 1.22519 1.00115 0.99394 0.91981 1.22393 0.99999 0.81545 0.99113 1.48550 1.43726 1.16394 1.26384 1.19768 0.78474 0.83388 0.85047 1.90688 1.64721 1.23996 1.65240 1.23291 1.02117 1.03905 0.97656 1.85599 1.54095 1.21205 1.31497 1.23177 1.31372 1.04419 1.10378 0.89946 1.26154 0.95955 0.95006 1.02045 1.70187 1.33352 1.10971 1.40276 0.84933 0.77388 0.78815 0.76712 1.19201 1.20246 1.18126 1.22099 0.95431 0.97425 0.85166 1.22512 0.95572 0.97465 0.90951 0.93710 0.92648 0.92117 0.91147 0.91768 0.93645 0.92919 0.92439 0.90009 0.94224 0.92152 0.89554 0.88299 0.90670 0.88596 0.88099 0.91007 0.90091 0.87834 0.87580 0.91941 0.90627 0.92375 0.92736 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.67 71.98 0.70 -1.41 16 2 C -0.11 -1.38 5.40 30.60 0.17 -1.22 16 3 C -0.09 -1.36 2.12 -10.79 -0.02 -1.38 16 4 H 0.06 1.01 6.23 -2.39 -0.01 0.99 16 5 C -0.14 -2.17 8.74 71.98 0.63 -1.54 16 6 C 0.06 0.76 4.22 86.30 0.36 1.12 16 7 N -0.53 -7.94 4.49 -886.73 -3.98 -11.93 16 8 C 0.05 0.49 6.70 86.85 0.58 1.07 16 9 C -0.11 -1.22 6.05 31.51 0.19 -1.03 16 10 C -0.08 -1.33 0.61 -51.90 -0.03 -1.36 16 11 C -0.10 -1.28 5.79 31.31 0.18 -1.09 16 12 C 0.09 1.76 6.48 86.81 0.56 2.32 16 13 N -0.62 -17.54 3.34 -813.31 -2.72 -20.26 16 14 C 0.55 21.81 7.87 87.66 0.69 22.50 16 15 O -0.57 -28.10 16.14 -3.04 -0.05 -28.15 16 16 C -0.12 -4.97 5.35 71.24 0.38 -4.58 16 17 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 22 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C 0.12 2.88 5.91 86.21 0.51 3.39 16 27 C 0.06 1.13 5.27 86.00 0.45 1.59 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.77 6.70 -2.39 -0.02 0.75 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 0.75 6.86 -2.39 -0.02 0.73 16 34 H 0.05 1.00 7.48 -2.38 -0.02 0.99 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.04 0.46 8.01 -2.39 -0.02 0.44 16 38 H 0.06 0.51 7.72 -2.39 -0.02 0.49 16 39 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.10 0.77 7.76 -2.39 -0.02 0.75 16 41 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 42 H 0.10 0.94 7.94 -2.39 -0.02 0.92 16 43 H 0.10 0.92 7.80 -2.39 -0.02 0.91 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 47 H 0.11 4.02 8.14 -2.40 -0.02 4.01 16 48 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 49 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 50 H 0.06 1.66 7.60 -2.39 -0.02 1.64 16 51 H 0.05 1.28 7.58 -2.39 -0.02 1.26 16 52 H 0.06 1.09 5.78 -2.39 -0.01 1.08 16 Total: -1.00 -76.23 413.07 1.73 -74.50 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.87 Total: 17.44 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 6.46 Total: -11.35 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -6.42 Total: -88.51 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.15 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -76.23 1.73 -74.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716728957.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.188 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds