Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46776 * 2 1 4 4 H 1.09002 * 109.52842 * 54.91577 * 3 2 1 5 5 C 1.53193 * 109.49763 * 294.83808 * 3 2 1 6 6 N 1.46927 * 108.77528 * 294.68362 * 5 3 2 7 7 C 1.34780 * 120.62934 * 126.39189 * 6 5 3 8 8 O 1.21285 * 119.99915 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00346 * 180.02562 * 7 6 5 10 10 S 1.80996 * 109.47358 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99803 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.38794 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.31635 * 120.00269 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00225 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47181 * 89.99995 * 15 13 11 17 17 H 1.48506 * 109.47025 * 210.00045 * 15 13 11 18 18 H 1.48496 * 109.46882 * 329.99823 * 15 13 11 19 19 C 1.46922 * 118.74127 * 306.39196 * 6 5 3 20 20 C 1.53195 * 108.77576 * 53.60524 * 19 6 5 21 21 C 1.53039 * 109.31472 * 305.36969 * 20 19 6 22 22 H 1.09007 * 109.45660 * 301.35420 * 21 20 19 23 23 N 1.46899 * 109.46010 * 181.38566 * 21 20 19 24 24 C 1.46902 * 111.00196 * 84.99776 * 23 21 20 25 25 C 1.50693 * 109.47167 * 179.97438 * 24 23 21 26 26 C 1.31007 * 120.00194 * 125.45453 * 25 24 23 27 27 C 1.50696 * 119.99382 * 5.46867 * 26 25 24 28 28 C 1.50699 * 119.99923 * 185.46655 * 26 25 24 29 29 H 1.08994 * 109.47296 * 59.99940 * 1 2 3 30 30 H 1.09005 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46845 * 299.99736 * 1 2 3 32 32 H 1.08993 * 109.47162 * 240.00202 * 2 1 3 33 33 H 1.09001 * 109.47228 * 119.99414 * 2 1 3 34 34 H 1.08997 * 109.58559 * 54.47187 * 5 3 2 35 35 H 1.09006 * 109.58862 * 174.75770 * 5 3 2 36 36 H 1.09004 * 109.46446 * 300.00006 * 9 7 6 37 37 H 1.08997 * 109.47069 * 59.99566 * 9 7 6 38 38 H 0.96996 * 120.00511 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.58201 * 293.81953 * 19 6 5 40 40 H 1.08996 * 109.58654 * 173.39689 * 19 6 5 41 41 H 1.09000 * 109.49153 * 65.31822 * 20 19 6 42 42 H 1.08992 * 109.49680 * 185.37699 * 20 19 6 43 43 H 1.00898 * 110.99536 * 321.03885 * 23 21 20 44 44 H 1.09005 * 109.46843 * 299.99809 * 24 23 21 45 45 H 1.08997 * 109.46764 * 59.99791 * 24 23 21 46 46 H 1.07999 * 119.99883 * 305.45977 * 25 24 23 47 47 H 1.08997 * 109.47638 * 54.93547 * 27 26 25 48 48 H 1.09002 * 109.46767 * 174.93343 * 27 26 25 49 49 H 1.08995 * 109.47584 * 294.92392 * 27 26 25 50 50 H 1.08997 * 109.46840 * 90.00452 * 28 26 25 51 51 H 1.09002 * 109.46909 * 210.00475 * 28 26 25 52 52 H 1.08995 * 109.47350 * 330.00210 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9829 0.8407 5 6 1.6384 2.1268 -1.3105 6 7 2.3367 1.4665 -2.4220 7 6 1.6492 0.9913 -3.4793 8 8 0.4425 1.1072 -3.5198 9 6 2.3796 0.3160 -4.6113 10 16 1.1893 -0.2082 -5.8700 11 6 2.2838 -0.9432 -7.0389 12 1 3.3463 -0.9618 -6.8464 13 6 1.7805 -1.4983 -8.2072 14 7 2.5981 -2.0478 -9.0804 15 14 -0.0573 -1.4655 -8.5407 16 1 -0.4050 -0.2228 -9.2754 17 1 -0.4329 -2.6462 -9.3595 18 1 -0.7948 -1.5018 -7.2523 19 6 3.7986 1.3342 -2.3589 20 6 4.1759 0.6589 -1.0366 21 6 3.5652 1.4451 0.1257 22 1 3.9297 2.4721 0.1006 23 7 3.9526 0.8193 1.3970 24 6 5.2662 1.3025 1.8429 25 6 5.6287 0.6404 3.1472 26 6 6.7643 -0.0027 3.2620 27 6 7.7622 0.0231 2.1330 28 6 7.0726 -0.7681 4.5230 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 0.5613 2.0403 -1.4528 35 1 1.9188 3.1795 -1.2740 36 1 3.0913 1.0142 -5.0521 37 1 2.9132 -0.5550 -4.2311 38 1 2.2464 -2.4354 -9.8970 39 1 4.2573 2.3217 -2.4088 40 1 4.1466 0.7247 -3.1928 41 1 3.7925 -0.3614 -1.0269 42 1 5.2608 0.6407 -0.9340 43 1 3.9436 -0.1869 1.3222 44 1 6.0170 1.0598 1.0908 45 1 5.2277 2.3828 1.9826 46 1 4.9523 0.6960 3.9873 47 1 7.9933 1.0567 1.8758 48 1 8.6744 -0.4869 2.4428 49 1 7.3408 -0.4821 1.2640 50 1 6.7124 -1.7920 4.4237 51 1 8.1499 -0.7763 4.6888 52 1 6.5786 -0.2895 5.3685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723361857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -54.012600 kcal Electronic energy + Delta-G solvation = -27982.870082 eV Core-core repulsion = 24300.318533 eV Total energy + Delta-G solvation = -3682.551550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54157 -39.47091 -37.89246 -35.80366 -34.93415 -34.68067 -32.07494 -31.51440 -30.01788 -28.82644 -28.38471 -27.85322 -25.63947 -24.71589 -23.75462 -23.25625 -21.38220 -19.86731 -19.31214 -18.68414 -18.18632 -17.17621 -17.07044 -16.81912 -16.57849 -16.10880 -15.91671 -15.75152 -15.61747 -15.16726 -14.93500 -14.74121 -14.65132 -14.45453 -14.22859 -13.88729 -13.66239 -13.45260 -13.36117 -13.31133 -13.21757 -13.10787 -13.02461 -12.80631 -12.70133 -12.63076 -12.50827 -12.26141 -12.09974 -11.87718 -11.86508 -11.52379 -11.44386 -11.18187 -11.12173 -10.84496 -10.52694 -9.69376 -9.59657 -9.24192 -9.00723 -8.52581 -6.23276 0.97180 1.24196 1.30128 1.45316 1.53560 1.56085 2.09582 2.24008 2.67884 2.85578 3.27165 3.51208 3.70067 3.88151 3.98525 4.02587 4.05623 4.10096 4.14229 4.17339 4.36781 4.37725 4.40162 4.46174 4.54238 4.60428 4.65083 4.70280 4.71094 4.73254 4.75090 4.80959 4.92506 4.93990 4.94895 4.99398 5.04762 5.08711 5.13292 5.20975 5.24094 5.26756 5.39044 5.47510 5.62928 5.69768 5.79992 5.96485 6.10036 6.17491 6.28441 6.49846 6.92689 7.12567 8.59729 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002387 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.450975 B =11729.784514 C =12734.502844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.077 4.077 4 H 0.096 0.904 5 C 0.111 3.889 6 N -0.599 5.599 7 C 0.534 3.466 8 O -0.560 6.560 9 C -0.106 4.106 10 S -0.176 6.176 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.238 1.238 19 C 0.104 3.896 20 C -0.159 4.159 21 C 0.103 3.897 22 H 0.089 0.911 23 N -0.679 5.679 24 C 0.088 3.912 25 C -0.171 4.171 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.342 0.658 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 7.681 28.326 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.097 4.097 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.333 5.333 7 C 0.322 3.678 8 O -0.439 6.439 9 C -0.256 4.256 10 S 0.051 5.949 11 C -0.675 4.675 12 H 0.080 0.920 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.735 3.265 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.162 1.162 19 C -0.019 4.019 20 C -0.199 4.199 21 C -0.008 4.008 22 H 0.107 0.893 23 N -0.309 5.309 24 C -0.040 4.040 25 C -0.189 4.189 26 C -0.134 4.134 27 C -0.177 4.177 28 C -0.175 4.175 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.161 0.839 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.196 8.221 28.515 30.536 hybrid contribution 1.415 -0.987 -1.390 2.215 sum 8.611 7.234 27.125 29.364 Atomic orbital electron populations 1.21789 0.96610 1.01152 1.01392 1.21437 0.95280 0.96677 1.01171 1.21452 0.95520 0.96432 0.96289 0.88557 1.21838 0.98172 0.96372 0.84800 1.47989 1.08329 1.57952 1.18990 1.19931 0.87019 0.77875 0.83009 1.90669 1.15507 1.58319 1.79382 1.23269 1.01847 1.03818 0.96710 1.84723 1.14489 1.75653 1.20032 1.22438 0.95052 1.43397 1.06589 0.91978 1.25550 1.02670 0.93175 0.94567 1.70011 1.37054 1.37813 1.10517 0.85880 0.80368 0.79290 0.80916 1.18670 1.18298 1.16207 1.21924 0.78329 1.02578 0.99074 1.22638 1.01984 1.00306 0.94936 1.21466 0.93961 0.98611 0.86715 0.89256 1.60520 1.28978 1.11924 1.29501 1.21027 0.89568 0.99547 0.93886 1.22579 0.97222 1.00606 0.98488 1.21891 0.96125 0.97802 0.97592 1.20884 0.97893 1.02398 0.96537 1.20884 1.02364 0.99638 0.94646 0.94345 0.93662 0.91529 0.94089 0.90634 0.90548 0.89782 0.87305 0.87544 0.91363 0.88949 0.89793 0.91786 0.89191 0.83920 0.93685 0.90517 0.87402 0.91179 0.91566 0.91710 0.91242 0.91368 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.68 71.98 0.70 -2.74 16 2 C -0.11 -2.16 4.67 30.60 0.14 -2.01 16 3 C -0.08 -1.28 2.38 -10.72 -0.03 -1.31 16 4 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 5 C 0.11 2.34 5.70 86.36 0.49 2.83 16 6 N -0.60 -14.81 2.33 -818.89 -1.91 -16.72 16 7 C 0.53 18.84 7.72 87.66 0.68 19.51 16 8 O -0.56 -24.16 15.28 -3.05 -0.05 -24.20 16 9 C -0.11 -4.06 4.50 71.24 0.32 -3.74 16 10 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 11 C -0.53 -30.80 10.04 67.95 0.68 -30.11 16 12 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 13 C 0.05 2.70 5.50 84.86 0.47 3.17 16 14 N -0.92 -55.82 13.97 21.65 0.30 -55.51 16 15 Si 0.91 45.32 27.74 68.60 1.90 47.22 16 16 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 19 C 0.10 1.85 6.34 86.36 0.55 2.40 16 20 C -0.16 -2.25 4.99 30.67 0.15 -2.09 16 21 C 0.10 1.35 2.13 44.94 0.10 1.44 16 22 H 0.09 1.06 7.80 -2.38 -0.02 1.04 16 23 N -0.68 -8.61 5.79 -495.44 -2.87 -11.48 16 24 C 0.09 1.00 5.67 85.55 0.49 1.48 16 25 C -0.17 -2.08 9.37 25.64 0.24 -1.84 16 26 C -0.13 -1.52 6.05 -16.50 -0.10 -1.62 16 27 C -0.12 -1.18 8.55 71.23 0.61 -0.57 16 28 C -0.12 -1.13 9.98 71.24 0.71 -0.42 16 29 H 0.04 1.07 6.46 -2.39 -0.02 1.05 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.04 1.00 6.13 -2.39 -0.01 0.98 16 33 H 0.08 1.34 7.00 -2.39 -0.02 1.32 16 34 H 0.08 2.03 5.21 -2.39 -0.01 2.02 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 3.87 7.94 -2.39 -0.02 3.86 16 37 H 0.11 3.83 7.69 -2.40 -0.02 3.81 16 38 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.63 5.93 -2.39 -0.01 1.62 16 41 H 0.06 1.10 6.45 -2.39 -0.02 1.08 16 42 H 0.09 0.99 7.43 -2.39 -0.02 0.98 16 43 H 0.34 4.57 7.63 -89.70 -0.68 3.89 16 44 H 0.05 0.47 5.15 -2.38 -0.01 0.46 16 45 H 0.08 0.87 8.05 -2.39 -0.02 0.86 16 46 H 0.11 1.42 8.02 -2.91 -0.02 1.39 16 47 H 0.07 0.63 7.84 -2.39 -0.02 0.61 16 48 H 0.07 0.57 7.92 -2.39 -0.02 0.55 16 49 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.07 0.55 8.01 -2.39 -0.02 0.53 16 52 H 0.06 0.58 8.04 -2.39 -0.02 0.56 16 Total: -1.00 -70.59 409.42 2.71 -67.88 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.18 Total: 18.47 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 6.19 Total: -15.63 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.47 Total: -83.71 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -70.59 2.71 -67.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723361857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.864 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds