Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 H 1.09005 * 109.52446 * 305.08503 * 3 2 1 5 5 C 1.52765 * 109.35619 * 65.15673 * 3 2 1 6 6 N 1.46920 * 109.00866 * 65.50488 * 5 3 2 7 7 C 1.34773 * 120.63073 * 233.58615 * 6 5 3 8 8 O 1.21287 * 119.99869 * 359.70580 * 7 6 5 9 9 C 1.50701 * 120.00274 * 179.71958 * 7 6 5 10 10 S 1.80997 * 109.47454 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00101 * 179.97438 * 10 9 7 12 12 H 1.07992 * 120.00484 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99488 * 179.72523 * 11 10 9 14 14 N 1.31622 * 120.00335 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99478 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47312 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47235 * 120.00139 * 15 13 11 18 18 H 1.48506 * 109.46814 * 240.00060 * 15 13 11 19 19 C 1.46929 * 118.73988 * 53.29924 * 6 5 3 20 20 C 1.53190 * 108.77865 * 306.65024 * 19 6 5 21 21 C 1.53038 * 109.50078 * 185.00141 * 3 2 1 22 22 H 1.08999 * 109.46201 * 181.39317 * 21 3 2 23 23 N 1.46900 * 109.46160 * 61.43167 * 21 3 2 24 24 C 1.46890 * 110.99983 * 154.93396 * 23 21 3 25 25 C 1.50705 * 109.47048 * 180.02562 * 24 23 21 26 26 C 1.31000 * 119.99929 * 236.01946 * 25 24 23 27 27 C 1.50698 * 120.00005 * 353.78573 * 26 25 24 28 28 C 1.50702 * 119.99995 * 173.78577 * 26 25 24 29 29 H 1.09002 * 109.47072 * 300.00015 * 1 2 3 30 30 H 1.09006 * 109.46997 * 59.99932 * 1 2 3 31 31 H 1.09000 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47072 * 239.99985 * 2 1 3 33 33 H 1.08996 * 109.46847 * 120.00098 * 2 1 3 34 34 H 1.08992 * 109.51295 * 305.61370 * 5 3 2 35 35 H 1.09004 * 109.42588 * 185.33500 * 5 3 2 36 36 H 1.09001 * 109.47531 * 59.99036 * 9 7 6 37 37 H 1.09002 * 109.46788 * 299.99462 * 9 7 6 38 38 H 0.97003 * 120.00074 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.58454 * 66.43622 * 19 6 5 40 40 H 1.09003 * 109.58761 * 186.85623 * 19 6 5 41 41 H 1.08996 * 109.49817 * 174.58606 * 20 19 6 42 42 H 1.08997 * 109.49634 * 294.64794 * 20 19 6 43 43 H 1.00903 * 110.99314 * 30.97977 * 23 21 3 44 44 H 1.08997 * 109.47452 * 299.99947 * 24 23 21 45 45 H 1.09003 * 109.47484 * 60.00337 * 24 23 21 46 46 H 1.07997 * 119.99998 * 56.02301 * 25 24 23 47 47 H 1.09000 * 109.47475 * 85.03965 * 27 26 25 48 48 H 1.09003 * 109.47283 * 205.04223 * 27 26 25 49 49 H 1.09003 * 109.47432 * 325.03929 * 27 26 25 50 50 H 1.08998 * 109.47134 * 90.00093 * 28 26 25 51 51 H 1.08995 * 109.46898 * 209.99985 * 28 26 25 52 52 H 1.08996 * 109.46772 * 330.00215 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6380 2.1217 1.3079 6 7 2.3367 1.4665 2.4219 7 6 1.6492 0.9908 3.4790 8 8 0.4426 1.1064 3.5194 9 6 2.3797 0.3156 4.6111 10 16 1.1895 -0.2081 5.8701 11 6 2.2839 -0.9444 7.0383 12 1 3.3461 -0.9647 6.8449 13 6 1.7810 -1.4939 8.2096 14 7 0.4869 -1.4645 8.4478 15 14 2.9414 -2.2740 9.4484 16 1 4.3363 -2.1787 8.9483 17 1 2.8308 -1.5619 10.7468 18 1 2.5792 -3.7021 9.6347 19 6 3.7987 1.3340 2.3588 20 6 4.1759 0.6586 1.0365 21 6 3.5653 1.4450 -0.1258 22 1 3.9300 2.4719 -0.1008 23 7 3.9526 0.8191 -1.3971 24 6 5.2662 1.3022 -1.8429 25 6 5.6287 0.6400 -3.1473 26 6 6.7508 -0.0276 -3.2533 27 6 7.7437 -0.0173 -2.1197 28 6 7.0488 -0.8058 -4.5090 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5609 2.0319 1.4487 35 1 1.9171 3.1747 1.2703 36 1 3.0912 1.0137 5.0521 37 1 2.9135 -0.5553 4.2307 38 1 0.1355 -1.8488 9.2662 39 1 4.2576 2.3214 2.4086 40 1 4.1467 0.7245 3.1928 41 1 5.2609 0.6410 0.9336 42 1 3.7930 -0.3618 1.0270 43 1 3.2507 0.9745 -2.1051 44 1 5.2279 2.3825 -1.9827 45 1 6.0171 1.0595 -1.0909 46 1 4.9634 0.7159 -3.9946 47 1 7.4765 -0.7870 -1.3956 48 1 8.7422 -0.2159 -2.5094 49 1 7.7307 0.9585 -1.6342 50 1 7.5749 -0.1656 -5.2170 51 1 7.6722 -1.6657 -4.2641 52 1 6.1148 -1.1490 -4.9539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723361860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -33.493043 kcal Electronic energy + Delta-G solvation = -27928.052576 eV Core-core repulsion = 24246.390821 eV Total energy + Delta-G solvation = -3681.661755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41271 -38.31818 -37.14990 -34.86857 -33.99269 -32.41490 -31.24520 -30.19281 -29.05048 -28.20982 -27.60961 -25.50705 -24.67173 -23.90556 -23.19017 -21.98553 -20.15578 -18.60364 -18.08747 -17.63038 -16.73891 -15.93545 -15.87684 -15.54506 -15.46517 -15.04691 -14.79204 -14.66689 -14.29316 -14.21173 -13.97188 -13.93406 -13.46371 -13.28522 -12.91808 -12.76904 -12.66116 -12.55508 -12.40644 -12.27148 -12.19280 -11.95190 -11.83024 -11.75203 -11.44086 -11.29045 -11.06221 -11.01045 -10.97031 -10.74175 -10.68892 -10.54064 -10.23510 -9.77426 -9.29343 -9.18319 -9.06011 -8.57626 -8.45431 -8.19540 -6.47790 -6.20268 -3.90289 1.79953 2.97537 3.10287 3.22432 3.27618 3.32271 3.63169 3.95609 4.21606 4.39164 4.50662 4.57737 4.62745 4.81882 4.95600 4.96589 5.01579 5.06245 5.11882 5.14362 5.14983 5.19672 5.29172 5.33953 5.34784 5.42862 5.45779 5.50865 5.53767 5.54868 5.62549 5.63790 5.67966 5.69774 5.72510 5.76071 5.90887 5.93377 5.98526 6.13410 6.15028 6.18656 6.32989 6.39365 6.48827 6.58682 6.70552 6.78992 7.10435 7.60588 7.62443 8.36889 8.61636 9.25216 10.87167 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.002409 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.285503 B =11618.317175 C =12972.812077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.076 0.924 5 C 0.117 3.883 6 N -0.615 5.615 7 C 0.536 3.464 8 O -0.517 6.517 9 C -0.150 4.150 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.108 3.892 20 C -0.124 4.124 21 C 0.095 3.905 22 H 0.044 0.956 23 N -0.676 5.676 24 C 0.084 3.916 25 C -0.164 4.164 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.117 4.117 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.267 0.733 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.340 0.660 44 H 0.032 0.968 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 6.309 -25.223 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.122 4.122 4 H 0.094 0.906 5 C -0.007 4.007 6 N -0.352 5.352 7 C 0.324 3.676 8 O -0.391 6.391 9 C -0.301 4.301 10 S 0.166 5.834 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.016 4.016 20 C -0.162 4.162 21 C -0.015 4.015 22 H 0.062 0.938 23 N -0.308 5.308 24 C -0.044 4.044 25 C -0.182 4.182 26 C -0.122 4.122 27 C -0.178 4.178 28 C -0.174 4.174 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.050 0.950 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.646 5.879 -24.725 27.554 hybrid contribution 2.019 0.298 0.336 2.068 sum 12.666 6.177 -24.389 28.167 Atomic orbital electron populations 1.21867 0.96001 1.01830 1.01758 1.21468 0.95463 0.95092 1.02707 1.21659 0.94375 0.98241 0.97887 0.90581 1.21487 0.99540 0.94953 0.84690 1.48032 1.07021 1.60091 1.20029 1.20288 0.87606 0.77432 0.82246 1.90682 1.13988 1.56109 1.78326 1.23550 1.04734 1.02513 0.99292 1.85393 1.08722 1.74469 1.14860 1.22898 0.95062 1.43869 1.06354 0.90936 1.24992 0.95588 0.95619 0.97427 1.70026 1.11579 1.42941 1.25723 0.86127 0.80281 0.78839 0.80310 1.19623 1.20594 1.20574 1.21729 0.80441 1.00868 0.98589 1.21957 1.00485 1.00905 0.92894 1.21501 0.94499 0.95614 0.89869 0.93849 1.60509 1.03698 1.61444 1.05107 1.21103 0.92427 0.95938 0.94962 1.22461 0.97545 1.00709 0.97531 1.21592 0.96274 0.97529 0.96851 1.20893 0.97701 1.02343 0.96872 1.20829 1.02061 0.99289 0.95226 0.91743 0.93434 0.92878 0.91325 0.91479 0.88267 0.92275 0.89411 0.89334 0.92268 0.91800 0.89054 0.91199 0.90126 0.84128 0.95033 0.89974 0.87589 0.91115 0.92059 0.91689 0.91780 0.91720 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.68 37.16 0.36 -1.51 16 2 C -0.11 -1.23 4.73 -26.73 -0.13 -1.36 16 3 C -0.10 -0.98 2.05 -90.72 -0.19 -1.17 16 4 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 5 C 0.12 1.40 5.67 -3.93 -0.02 1.38 16 6 N -0.62 -8.62 2.34 -173.03 -0.40 -9.03 16 7 C 0.54 10.14 7.72 -10.99 -0.08 10.06 16 8 O -0.52 -11.65 15.28 5.55 0.08 -11.57 16 9 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 20 C -0.12 -1.20 5.25 -26.61 -0.14 -1.34 16 21 C 0.09 0.83 2.15 -67.67 -0.15 0.68 16 22 H 0.04 0.37 7.80 -51.93 -0.40 -0.03 16 23 N -0.68 -5.48 5.53 -107.95 -0.60 -6.08 16 24 C 0.08 0.63 5.55 -4.98 -0.03 0.60 16 25 C -0.16 -1.21 9.36 -36.02 -0.34 -1.54 16 26 C -0.12 -0.87 6.05 -101.07 -0.61 -1.48 16 27 C -0.12 -0.79 8.93 36.00 0.32 -0.46 16 28 C -0.12 -0.69 10.00 36.01 0.36 -0.33 16 29 H 0.06 0.92 6.45 -51.93 -0.33 0.58 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 33 H 0.07 0.92 6.13 -51.93 -0.32 0.60 16 34 H 0.10 1.40 5.18 -51.93 -0.27 1.13 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 37 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 41 H 0.07 0.60 7.43 -51.93 -0.39 0.22 16 42 H 0.08 0.93 6.45 -51.93 -0.34 0.59 16 43 H 0.34 2.53 8.25 -39.29 -0.32 2.20 16 44 H 0.03 0.23 8.05 -51.93 -0.42 -0.19 16 45 H 0.08 0.63 4.98 -51.93 -0.26 0.37 16 46 H 0.11 0.73 8.05 -52.49 -0.42 0.30 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 49 H 0.06 0.40 6.66 -51.93 -0.35 0.05 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 52 H 0.06 0.37 8.06 -51.93 -0.42 -0.05 16 LS Contribution 412.55 15.07 6.22 6.22 Total: -1.00 -32.98 412.55 -10.59 -43.57 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -9.09 Total: 0.99 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.30 Total: -11.16 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.27 Total: -40.61 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.98 -10.59 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723361860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.074 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds