Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 H 1.09005 * 109.52446 * 305.08503 * 3 2 1 5 5 C 1.52765 * 109.35619 * 65.15673 * 3 2 1 6 6 N 1.46920 * 109.00866 * 65.50488 * 5 3 2 7 7 C 1.34773 * 120.63073 * 233.58615 * 6 5 3 8 8 O 1.21287 * 119.99869 * 359.70580 * 7 6 5 9 9 C 1.50701 * 120.00274 * 179.71958 * 7 6 5 10 10 S 1.80997 * 109.47454 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00101 * 179.97438 * 10 9 7 12 12 H 1.07992 * 120.00484 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99488 * 179.72523 * 11 10 9 14 14 N 1.31622 * 120.00335 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99478 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47312 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47235 * 120.00139 * 15 13 11 18 18 H 1.48506 * 109.46814 * 240.00060 * 15 13 11 19 19 C 1.46929 * 118.73988 * 53.29924 * 6 5 3 20 20 C 1.53190 * 108.77865 * 306.65024 * 19 6 5 21 21 C 1.53038 * 109.50078 * 185.00141 * 3 2 1 22 22 H 1.08999 * 109.46201 * 181.39317 * 21 3 2 23 23 N 1.46900 * 109.46160 * 61.43167 * 21 3 2 24 24 C 1.46890 * 110.99983 * 154.93396 * 23 21 3 25 25 C 1.50705 * 109.47048 * 180.02562 * 24 23 21 26 26 C 1.31000 * 119.99929 * 236.01946 * 25 24 23 27 27 C 1.50698 * 120.00005 * 353.78573 * 26 25 24 28 28 C 1.50702 * 119.99995 * 173.78577 * 26 25 24 29 29 H 1.09002 * 109.47072 * 300.00015 * 1 2 3 30 30 H 1.09006 * 109.46997 * 59.99932 * 1 2 3 31 31 H 1.09000 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47072 * 239.99985 * 2 1 3 33 33 H 1.08996 * 109.46847 * 120.00098 * 2 1 3 34 34 H 1.08992 * 109.51295 * 305.61370 * 5 3 2 35 35 H 1.09004 * 109.42588 * 185.33500 * 5 3 2 36 36 H 1.09001 * 109.47531 * 59.99036 * 9 7 6 37 37 H 1.09002 * 109.46788 * 299.99462 * 9 7 6 38 38 H 0.97003 * 120.00074 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.58454 * 66.43622 * 19 6 5 40 40 H 1.09003 * 109.58761 * 186.85623 * 19 6 5 41 41 H 1.08996 * 109.49817 * 174.58606 * 20 19 6 42 42 H 1.08997 * 109.49634 * 294.64794 * 20 19 6 43 43 H 1.00903 * 110.99314 * 30.97977 * 23 21 3 44 44 H 1.08997 * 109.47452 * 299.99947 * 24 23 21 45 45 H 1.09003 * 109.47484 * 60.00337 * 24 23 21 46 46 H 1.07997 * 119.99998 * 56.02301 * 25 24 23 47 47 H 1.09000 * 109.47475 * 85.03965 * 27 26 25 48 48 H 1.09003 * 109.47283 * 205.04223 * 27 26 25 49 49 H 1.09003 * 109.47432 * 325.03929 * 27 26 25 50 50 H 1.08998 * 109.47134 * 90.00093 * 28 26 25 51 51 H 1.08995 * 109.46898 * 209.99985 * 28 26 25 52 52 H 1.08996 * 109.46772 * 330.00215 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6380 2.1217 1.3079 6 7 2.3367 1.4665 2.4219 7 6 1.6492 0.9908 3.4790 8 8 0.4426 1.1064 3.5194 9 6 2.3797 0.3156 4.6111 10 16 1.1895 -0.2081 5.8701 11 6 2.2839 -0.9444 7.0383 12 1 3.3461 -0.9647 6.8449 13 6 1.7810 -1.4939 8.2096 14 7 0.4869 -1.4645 8.4478 15 14 2.9414 -2.2740 9.4484 16 1 4.3363 -2.1787 8.9483 17 1 2.8308 -1.5619 10.7468 18 1 2.5792 -3.7021 9.6347 19 6 3.7987 1.3340 2.3588 20 6 4.1759 0.6586 1.0365 21 6 3.5653 1.4450 -0.1258 22 1 3.9300 2.4719 -0.1008 23 7 3.9526 0.8191 -1.3971 24 6 5.2662 1.3022 -1.8429 25 6 5.6287 0.6400 -3.1473 26 6 6.7508 -0.0276 -3.2533 27 6 7.7437 -0.0173 -2.1197 28 6 7.0488 -0.8058 -4.5090 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5609 2.0319 1.4487 35 1 1.9171 3.1747 1.2703 36 1 3.0912 1.0137 5.0521 37 1 2.9135 -0.5553 4.2307 38 1 0.1355 -1.8488 9.2662 39 1 4.2576 2.3214 2.4086 40 1 4.1467 0.7245 3.1928 41 1 5.2609 0.6410 0.9336 42 1 3.7930 -0.3618 1.0270 43 1 3.2507 0.9745 -2.1051 44 1 5.2279 2.3825 -1.9827 45 1 6.0171 1.0595 -1.0909 46 1 4.9634 0.7159 -3.9946 47 1 7.4765 -0.7870 -1.3956 48 1 8.7422 -0.2159 -2.5094 49 1 7.7307 0.9585 -1.6342 50 1 7.5749 -0.1656 -5.2170 51 1 7.6722 -1.6657 -4.2641 52 1 6.1148 -1.1490 -4.9539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723361860.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -52.819072 kcal Electronic energy + Delta-G solvation = -27928.890616 eV Core-core repulsion = 24246.390821 eV Total energy + Delta-G solvation = -3682.499794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50893 -39.41747 -37.86242 -35.82096 -34.88141 -34.58676 -32.12609 -31.46497 -30.05649 -28.83629 -28.33374 -27.65722 -25.62378 -24.81357 -23.91453 -22.79466 -21.38650 -19.84729 -19.25545 -18.74441 -18.09517 -16.99961 -16.89690 -16.85546 -16.50375 -16.27666 -15.89966 -15.69485 -15.60718 -15.13958 -15.00361 -14.63008 -14.47832 -14.36724 -14.20165 -14.15074 -13.63470 -13.31430 -13.21083 -13.15506 -13.15372 -12.99939 -12.91617 -12.79569 -12.73672 -12.58111 -12.48065 -12.24507 -12.13250 -11.69703 -11.61079 -11.54368 -11.43754 -11.15989 -11.09533 -10.78757 -10.25431 -9.75891 -9.60384 -9.15516 -8.66698 -8.34748 -6.12649 1.26245 1.27530 1.41088 1.46164 1.57425 1.61880 2.13723 2.27440 2.99312 3.24287 3.30437 3.59556 3.70843 3.87244 3.97070 3.97936 4.11958 4.14609 4.23678 4.26360 4.39801 4.44066 4.46530 4.51794 4.54453 4.57822 4.61992 4.68378 4.72152 4.73284 4.75195 4.83236 4.86809 4.88891 4.98874 5.01407 5.04403 5.08434 5.17091 5.22058 5.24127 5.29085 5.41813 5.46428 5.50003 5.63888 5.82701 6.06411 6.17188 6.19885 6.32845 6.52789 7.06501 7.18989 8.74697 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.002409 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.285503 B =11618.317175 C =12972.812077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.092 4.092 4 H 0.101 0.899 5 C 0.112 3.888 6 N -0.601 5.601 7 C 0.534 3.466 8 O -0.564 6.564 9 C -0.123 4.123 10 S -0.151 6.151 11 C -0.544 4.544 12 H 0.082 0.918 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.101 3.899 20 C -0.118 4.118 21 C 0.103 3.897 22 H 0.058 0.942 23 N -0.681 5.681 24 C 0.088 3.912 25 C -0.172 4.172 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.271 0.729 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.346 0.654 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 6.984 -26.816 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.111 4.111 4 H 0.119 0.881 5 C -0.011 4.011 6 N -0.335 5.335 7 C 0.322 3.678 8 O -0.442 6.442 9 C -0.274 4.274 10 S 0.077 5.923 11 C -0.692 4.692 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.021 4.021 20 C -0.156 4.156 21 C -0.007 4.007 22 H 0.076 0.924 23 N -0.313 5.313 24 C -0.041 4.041 25 C -0.191 4.191 26 C -0.131 4.131 27 C -0.178 4.178 28 C -0.175 4.175 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.166 0.834 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.639 6.572 -26.370 30.407 hybrid contribution 1.140 0.130 0.678 1.332 sum 14.778 6.701 -25.692 30.388 Atomic orbital electron populations 1.21832 0.96731 1.01173 1.01428 1.21385 0.94708 0.96214 1.01735 1.21596 0.95436 0.96899 0.97169 0.88126 1.21685 0.98194 0.96319 0.84871 1.48005 1.08372 1.58224 1.18856 1.20035 0.87000 0.77709 0.83088 1.90667 1.15811 1.58297 1.79454 1.23362 1.02853 1.03464 0.97770 1.85566 1.13304 1.75323 1.18138 1.23214 0.95317 1.43947 1.06699 0.90025 1.26137 0.97424 0.95989 0.99679 1.70190 1.13911 1.44075 1.26586 0.84905 0.78238 0.77672 0.77133 1.17989 1.19872 1.19940 1.22011 0.78222 1.02523 0.99387 1.21890 1.01516 0.99729 0.92493 1.21383 0.93282 0.96149 0.89883 0.92430 1.60456 1.04261 1.61588 1.05006 1.21074 0.91839 0.96253 0.94886 1.22532 0.97795 1.01044 0.97712 1.21825 0.96429 0.97409 0.97440 1.20905 0.97970 1.02350 0.96603 1.20852 1.02210 0.99431 0.94987 0.94613 0.91094 0.93774 0.90227 0.94375 0.90663 0.89883 0.87660 0.87983 0.92012 0.89106 0.89558 0.89452 0.92111 0.83446 0.94400 0.90146 0.87268 0.91714 0.91345 0.91297 0.90994 0.91439 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.68 71.98 0.70 -3.00 16 2 C -0.10 -2.22 4.73 30.60 0.14 -2.08 16 3 C -0.09 -1.55 2.05 -10.86 -0.02 -1.58 16 4 H 0.10 1.31 8.10 -2.38 -0.02 1.29 16 5 C 0.11 2.54 5.67 86.22 0.49 3.03 16 6 N -0.60 -16.26 2.34 -819.74 -1.92 -18.17 16 7 C 0.53 20.55 7.72 87.66 0.68 21.23 16 8 O -0.56 -26.66 15.28 -3.05 -0.05 -26.70 16 9 C -0.12 -5.08 4.50 71.24 0.32 -4.76 16 10 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 11 C -0.54 -31.43 9.50 67.96 0.65 -30.79 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.71 5.49 84.86 0.47 1.18 16 14 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 15 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 C 0.10 1.99 6.34 86.36 0.55 2.54 16 20 C -0.12 -1.99 5.25 30.67 0.16 -1.83 16 21 C 0.10 1.47 2.15 44.94 0.10 1.56 16 22 H 0.06 0.73 7.80 -2.39 -0.02 0.71 16 23 N -0.68 -9.02 5.53 -495.46 -2.74 -11.76 16 24 C 0.09 1.05 5.55 85.56 0.48 1.52 16 25 C -0.17 -2.15 9.36 25.65 0.24 -1.91 16 26 C -0.13 -1.61 6.05 -16.49 -0.10 -1.71 16 27 C -0.12 -1.34 8.93 71.24 0.64 -0.70 16 28 C -0.12 -1.19 10.00 71.24 0.71 -0.48 16 29 H 0.03 1.06 6.45 -2.39 -0.02 1.05 16 30 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.56 7.45 -2.39 -0.02 1.54 16 33 H 0.04 1.05 6.13 -2.39 -0.01 1.03 16 34 H 0.07 2.14 5.18 -2.39 -0.01 2.13 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 3.93 7.94 -2.40 -0.02 3.91 16 37 H 0.10 3.89 7.69 -2.39 -0.02 3.87 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.81 5.93 -2.39 -0.01 1.79 16 41 H 0.09 1.22 7.43 -2.39 -0.02 1.20 16 42 H 0.06 1.31 6.45 -2.39 -0.02 1.29 16 43 H 0.35 4.03 8.25 -89.69 -0.74 3.29 16 44 H 0.04 0.42 8.05 -2.39 -0.02 0.40 16 45 H 0.08 0.99 4.98 -2.39 -0.01 0.98 16 46 H 0.11 1.26 8.05 -2.91 -0.02 1.23 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 49 H 0.07 0.69 6.66 -2.39 -0.02 0.67 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 52 H 0.06 0.63 8.06 -2.39 -0.02 0.61 16 Total: -1.00 -74.85 412.55 2.79 -72.06 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.16 Total: 22.23 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 6.19 Total: -17.76 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -4.37 Total: -86.16 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -74.85 2.79 -72.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723361860.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.242 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds