Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99982 * 2 1 4 4 C 1.50701 * 119.99817 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47212 * 94.99810 * 4 2 1 6 6 N 1.46894 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00559 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.45740 * 325.00195 * 7 6 5 9 9 C 1.53033 * 109.46123 * 84.97223 * 7 6 5 10 10 C 1.53197 * 109.31510 * 181.40390 * 9 7 6 11 11 N 1.46927 * 108.76031 * 305.34307 * 10 9 7 12 12 C 1.34779 * 120.63097 * 233.63582 * 11 10 9 13 13 O 1.21273 * 120.00093 * 179.97438 * 12 11 10 14 14 C 1.50699 * 119.99942 * 359.97438 * 12 11 10 15 15 S 1.80999 * 109.47369 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00318 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31636 * 120.00538 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99896 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46816 * 90.00003 * 20 18 16 22 22 H 1.48495 * 109.47057 * 209.99902 * 20 18 16 23 23 H 1.48497 * 109.46718 * 330.00230 * 20 18 16 24 24 C 1.46928 * 118.73865 * 53.61929 * 11 10 9 25 25 C 1.53040 * 109.46358 * 205.02852 * 7 6 5 26 26 H 1.08994 * 109.49650 * 298.59933 * 25 7 6 27 27 C 1.53009 * 109.49558 * 58.66183 * 25 7 6 28 28 C 1.53001 * 109.46815 * 185.00244 * 27 25 7 29 29 H 1.08006 * 119.99962 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99833 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46989 * 270.00021 * 3 2 1 32 32 H 1.08999 * 109.46821 * 30.00203 * 3 2 1 33 33 H 1.09005 * 109.46731 * 150.00245 * 3 2 1 34 34 H 1.09002 * 109.47060 * 214.99865 * 4 2 1 35 35 H 1.09001 * 109.47380 * 334.99953 * 4 2 1 36 36 H 1.09002 * 109.47153 * 299.99998 * 5 4 2 37 37 H 1.08998 * 109.47533 * 59.99628 * 5 4 2 38 38 H 1.00899 * 111.00176 * 303.95826 * 6 5 4 39 39 H 1.09008 * 109.49930 * 301.33971 * 9 7 6 40 40 H 1.09001 * 109.49856 * 61.43281 * 9 7 6 41 41 H 1.08999 * 109.58335 * 185.56857 * 10 9 7 42 42 H 1.08997 * 109.71281 * 65.20138 * 10 9 7 43 43 H 1.09003 * 109.46881 * 299.99982 * 14 12 11 44 44 H 1.09000 * 109.47098 * 59.99566 * 14 12 11 45 45 H 0.96996 * 120.00298 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.58303 * 186.60173 * 24 11 10 47 47 H 1.08998 * 109.70361 * 66.24230 * 24 11 10 48 48 H 1.08999 * 109.47175 * 305.00025 * 27 25 7 49 49 H 1.09002 * 109.46922 * 65.00362 * 27 25 7 50 50 H 1.08999 * 109.47070 * 299.99845 * 28 27 25 51 51 H 1.08999 * 109.47331 * 59.99565 * 28 27 25 52 52 H 1.09000 * 109.46879 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 7 3.1623 -2.9552 -1.4383 7 6 3.5296 -3.3505 -2.8046 8 1 2.7415 -3.0481 -3.4944 9 6 4.8411 -2.6672 -3.1980 10 6 5.2027 -3.0539 -4.6355 11 7 5.2319 -4.5193 -4.7375 12 6 6.3181 -5.1524 -5.2232 13 8 6.3300 -6.3626 -5.3019 14 6 7.5178 -4.3566 -5.6684 15 16 8.8016 -5.4837 -6.2663 16 6 10.0490 -4.3203 -6.7078 17 1 9.8743 -3.2633 -6.5710 18 6 11.2557 -4.7620 -7.2322 19 7 12.1875 -3.8928 -7.5625 20 14 11.5577 -6.5902 -7.4694 21 1 11.1052 -6.9948 -8.8246 22 1 13.0080 -6.8750 -7.3262 23 1 10.7997 -7.3539 -6.4459 24 6 4.0545 -5.2815 -4.2997 25 6 3.7057 -4.8695 -2.8661 26 1 4.5101 -5.1699 -2.1947 27 6 2.4040 -5.5521 -2.4409 28 6 2.6177 -7.0660 -2.3823 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 2.2452 1.6197 -1.0276 32 1 1.4744 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 2.9742 -1.1992 0.5889 35 1 1.4386 -2.0857 0.4334 36 1 1.5166 -1.7893 -2.0272 37 1 3.0522 -0.9029 -1.8718 38 1 3.9775 -2.9020 -0.8462 39 1 4.7221 -1.5856 -3.1314 40 1 5.6352 -2.9884 -2.5239 41 1 6.1837 -2.6506 -4.8866 42 1 4.4566 -2.6545 -5.3225 43 1 7.2269 -3.6792 -6.4713 44 1 7.9032 -3.7794 -4.8279 45 1 13.0310 -4.2016 -7.9287 46 1 4.2780 -6.3480 -4.3293 47 1 3.2121 -5.0663 -4.9570 48 1 2.1077 -5.1887 -1.4570 49 1 1.6209 -5.3235 -3.1639 50 1 2.9141 -7.4295 -3.3662 51 1 3.4009 -7.2947 -1.6595 52 1 1.6903 -7.5524 -2.0799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723364414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -58.563160 kcal Electronic energy + Delta-G solvation = -27541.807068 eV Core-core repulsion = 23859.058191 eV Total energy + Delta-G solvation = -3682.748877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40418 -39.45164 -37.74245 -35.96602 -35.28854 -34.68284 -32.34103 -31.51330 -30.01349 -28.75824 -28.01960 -27.84974 -25.50201 -24.90921 -23.30719 -22.37105 -21.34793 -20.53016 -19.56616 -19.18904 -18.23759 -17.25167 -17.02171 -16.85597 -16.39747 -16.23008 -15.94375 -15.73328 -15.39073 -15.17164 -14.94741 -14.78933 -14.66336 -14.44778 -14.30259 -14.00424 -13.89313 -13.63931 -13.40376 -13.35127 -13.08572 -13.02438 -12.94310 -12.69259 -12.65787 -12.51625 -12.42848 -12.11320 -11.92167 -11.87727 -11.76348 -11.59161 -11.45121 -11.22073 -11.18318 -10.92500 -10.53609 -9.89401 -9.75138 -9.24416 -9.01722 -8.52699 -6.23782 0.96101 1.30238 1.35413 1.44868 1.50562 1.53151 2.05510 2.23954 2.66883 2.85419 3.14060 3.48192 3.64263 3.88993 3.97916 4.00239 4.03894 4.12555 4.15410 4.23189 4.33742 4.34934 4.39342 4.41219 4.46780 4.52782 4.64823 4.69565 4.70590 4.72716 4.76248 4.80303 4.84502 4.98911 5.01780 5.06544 5.09317 5.13791 5.15536 5.19841 5.22507 5.30002 5.46104 5.48053 5.64446 5.69611 5.79736 6.01170 6.09877 6.11583 6.23515 6.47787 6.92491 7.07129 8.59528 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002253 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.451939 B =12427.056644 C =13903.485308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.080 4.080 5 C 0.072 3.928 6 N -0.682 5.682 7 C 0.102 3.898 8 H 0.087 0.913 9 C -0.157 4.157 10 C 0.103 3.897 11 N -0.604 5.604 12 C 0.533 3.467 13 O -0.563 6.563 14 C -0.105 4.105 15 S -0.177 6.177 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.238 1.238 24 C 0.114 3.886 25 C -0.079 4.079 26 H 0.057 0.943 27 C -0.097 4.097 28 C -0.157 4.157 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.344 0.656 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.277 0.723 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.044 0.956 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.355 7.919 15.840 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.178 4.178 4 C -0.117 4.117 5 C -0.057 4.057 6 N -0.311 5.311 7 C -0.008 4.008 8 H 0.105 0.895 9 C -0.197 4.197 10 C -0.020 4.020 11 N -0.338 5.338 12 C 0.320 3.680 13 O -0.442 6.442 14 C -0.256 4.256 15 S 0.050 5.950 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.008 4.008 25 C -0.099 4.099 26 H 0.075 0.925 27 C -0.135 4.135 28 C -0.214 4.214 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.162 0.838 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.751 5.819 15.683 31.550 hybrid contribution 1.547 1.551 -0.500 2.247 sum -25.203 7.370 15.183 30.332 Atomic orbital electron populations 1.23832 0.95391 1.02262 1.02263 1.21839 0.95608 0.95980 0.99848 1.20901 1.00234 0.94330 1.02368 1.20608 1.00251 0.94179 0.96684 1.21864 0.97955 0.89446 0.96420 1.60536 1.29010 1.31889 1.09693 1.21462 0.95324 0.93516 0.90483 0.89523 1.22611 0.98991 1.02001 0.96049 1.21952 1.03938 0.78001 0.98119 1.48092 1.14728 1.08285 1.62674 1.20017 0.83713 0.87439 0.76783 1.90668 1.82015 1.15587 1.55934 1.23270 0.95645 1.01693 1.04983 1.84738 1.12922 1.14154 1.83208 1.22431 1.02072 0.94337 1.48653 0.91899 1.25549 0.94571 1.02476 0.93359 1.70011 1.06851 1.36210 1.42266 0.85880 0.79347 0.80372 0.80858 1.18685 1.18253 1.16215 1.21828 0.86512 0.96809 0.95661 1.21410 0.98758 0.95292 0.94426 0.92460 1.21321 0.95448 0.93888 1.02833 1.21853 1.01555 0.96891 1.01131 0.88309 0.88055 0.91256 0.91545 0.91682 0.91189 0.90980 0.91291 0.94800 0.83794 0.88876 0.91950 0.89556 0.89017 0.87138 0.87260 0.91349 0.90872 0.89972 0.89863 0.91682 0.93722 0.93669 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 13.89 67.78 0.94 -1.18 16 2 C -0.13 -1.41 5.31 -16.49 -0.09 -1.50 16 3 C -0.12 -1.11 10.03 71.24 0.71 -0.40 16 4 C -0.08 -0.81 5.64 29.85 0.17 -0.65 16 5 C 0.07 0.74 5.46 86.30 0.47 1.22 16 6 N -0.68 -7.93 5.34 -491.46 -2.62 -10.56 16 7 C 0.10 1.36 1.89 44.94 0.08 1.44 16 8 H 0.09 1.09 7.80 -2.38 -0.02 1.07 16 9 C -0.16 -2.21 5.33 30.67 0.16 -2.05 16 10 C 0.10 1.86 6.34 86.36 0.55 2.41 16 11 N -0.60 -15.45 2.97 -818.91 -2.43 -17.88 16 12 C 0.53 19.16 7.72 87.66 0.68 19.83 16 13 O -0.56 -24.85 15.27 -3.01 -0.05 -24.90 16 14 C -0.11 -4.05 4.50 71.24 0.32 -3.73 16 15 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 16 C -0.53 -30.77 10.04 67.95 0.68 -30.09 16 17 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 18 C 0.05 2.70 5.50 84.85 0.47 3.17 16 19 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 20 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 21 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 24 C 0.11 2.52 5.33 86.36 0.46 2.98 16 25 C -0.08 -1.36 2.06 -10.71 -0.02 -1.38 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 C -0.10 -1.46 5.31 30.60 0.16 -1.30 16 28 C -0.16 -2.67 9.67 71.98 0.70 -1.98 16 29 H 0.10 1.00 7.99 -2.91 -0.02 0.97 16 30 H 0.10 0.93 8.04 -2.91 -0.02 0.90 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.55 8.06 -2.39 -0.02 0.53 16 33 H 0.06 0.56 8.09 -2.38 -0.02 0.54 16 34 H 0.07 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.07 0.82 7.99 -2.39 -0.02 0.80 16 36 H 0.07 0.78 8.06 -2.39 -0.02 0.76 16 37 H 0.03 0.35 7.41 -2.39 -0.02 0.33 16 38 H 0.34 3.97 8.48 -89.70 -0.76 3.21 16 39 H 0.09 1.02 7.42 -2.38 -0.02 1.00 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.68 5.93 -2.39 -0.01 1.66 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 3.93 7.94 -2.39 -0.02 3.91 16 44 H 0.11 3.91 7.69 -2.39 -0.02 3.89 16 45 H 0.28 15.58 8.31 -92.71 -0.77 14.80 16 46 H 0.07 2.02 5.73 -2.39 -0.01 2.01 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.26 7.41 -2.39 -0.02 1.24 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.04 0.85 6.70 -2.39 -0.02 0.84 16 51 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.67 419.13 2.58 -68.09 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.08 Total: 16.76 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 6.45 Total: -13.19 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -4.76 Total: -83.81 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -70.67 2.58 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723364414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.531 kcal (2) G-P(sol) polarization free energy of solvation -70.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds