Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99824 * 2 1 4 4 C 1.50695 * 120.00186 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47029 * 94.99763 * 4 2 1 6 6 N 1.46903 * 109.46781 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99905 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.45704 * 35.02809 * 7 6 5 9 9 C 1.53035 * 109.46078 * 275.06840 * 7 6 5 10 10 C 1.53618 * 109.24719 * 178.48782 * 9 7 6 11 11 N 1.46930 * 108.54114 * 54.85366 * 10 9 7 12 12 C 1.34775 * 120.62950 * 126.36825 * 11 10 9 13 13 O 1.21276 * 119.99984 * 179.72080 * 12 11 10 14 14 C 1.50698 * 120.00022 * 359.72558 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99890 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00121 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00210 * 20 18 16 24 24 C 1.46924 * 118.73842 * 306.09779 * 11 10 9 25 25 C 1.53032 * 109.46081 * 154.99917 * 7 6 5 26 26 H 1.09000 * 109.52593 * 61.42043 * 25 7 6 27 27 C 1.53003 * 109.50014 * 301.33606 * 25 7 6 28 28 C 1.53001 * 109.47353 * 175.16163 * 27 25 7 29 29 H 1.08000 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99891 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46859 * 240.00221 * 3 2 1 32 32 H 1.09004 * 109.47133 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46562 * 119.99760 * 3 2 1 34 34 H 1.09001 * 109.46970 * 335.00254 * 4 2 1 35 35 H 1.08995 * 109.47506 * 215.00188 * 4 2 1 36 36 H 1.09001 * 109.46844 * 60.00414 * 5 4 2 37 37 H 1.08992 * 109.47289 * 299.99761 * 5 4 2 38 38 H 1.00900 * 110.99996 * 56.04761 * 6 5 4 39 39 H 1.09001 * 109.49716 * 298.56634 * 9 7 6 40 40 H 1.09012 * 109.49817 * 58.62590 * 9 7 6 41 41 H 1.09004 * 109.74298 * 295.12420 * 10 9 7 42 42 H 1.08994 * 109.66972 * 174.54750 * 10 9 7 43 43 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 44 44 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 45 45 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.58423 * 173.64275 * 24 11 10 47 47 H 1.09000 * 109.58943 * 294.06988 * 24 11 10 48 48 H 1.09004 * 109.47102 * 295.16027 * 27 25 7 49 49 H 1.08997 * 109.46890 * 55.16351 * 27 25 7 50 50 H 1.08994 * 109.47061 * 179.97438 * 28 27 25 51 51 H 1.08995 * 109.46991 * 300.00208 * 28 27 25 52 52 H 1.08997 * 109.46969 * 60.00237 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 7 3.1614 -2.9557 -1.4384 7 6 3.5286 -3.3510 -2.8047 8 1 3.7588 -2.4612 -3.3907 9 6 2.3599 -4.0984 -3.4508 10 6 2.7350 -4.4762 -4.8918 11 7 3.9936 -5.2338 -4.8636 12 6 4.0803 -6.4433 -5.4518 13 8 5.1263 -7.0565 -5.4261 14 6 2.8775 -7.0337 -6.1415 15 16 3.3093 -8.6521 -6.8273 16 6 1.7668 -9.0986 -7.5525 17 1 0.9232 -8.4278 -7.4832 18 6 1.6375 -10.3096 -8.2183 19 7 2.6671 -11.1247 -8.3076 20 14 0.0020 -10.7832 -8.9866 21 1 -0.0480 -10.2916 -10.3869 22 1 -0.1406 -12.2614 -8.9755 23 1 -1.1057 -10.1732 -8.2080 24 6 5.1575 -4.6451 -4.1874 25 6 4.7567 -4.2630 -2.7590 26 1 4.5201 -5.1646 -2.1940 27 6 5.9151 -3.5263 -2.0834 28 6 7.1037 -4.4772 -1.9292 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.6901 1.3629 -0.8900 32 1 1.3552 2.1337 0.0005 33 1 2.6901 1.3628 0.8900 34 1 1.4386 -2.0856 0.4333 35 1 2.9742 -1.1991 0.5889 36 1 3.0523 -0.9027 -1.8717 37 1 1.5167 -1.7893 -2.0272 38 1 2.6280 -3.6810 -0.9828 39 1 2.1453 -5.0015 -2.8794 40 1 1.4788 -3.4566 -3.4613 41 1 2.8658 -3.5725 -5.4872 42 1 1.9476 -5.0919 -5.3264 43 1 2.5589 -6.3716 -6.9467 44 1 2.0662 -7.1480 -5.4227 45 1 2.5768 -11.9712 -8.7726 46 1 5.9689 -5.3723 -4.1570 47 1 5.4818 -3.7549 -4.7264 48 1 6.2092 -2.6733 -2.6950 49 1 5.5994 -3.1770 -1.1003 50 1 7.9290 -3.9523 -1.4483 51 1 6.8096 -5.3302 -1.3177 52 1 7.4193 -4.8265 -2.9122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723364417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -59.215836 kcal Electronic energy + Delta-G solvation = -27492.342292 eV Core-core repulsion = 23809.565113 eV Total energy + Delta-G solvation = -3682.777179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36722 -39.42503 -37.73962 -35.94552 -35.27815 -34.59625 -32.31265 -31.45339 -29.98717 -28.74008 -28.00843 -27.66720 -25.47797 -24.90069 -23.29881 -22.35959 -21.32257 -20.49087 -19.54380 -19.18467 -18.17761 -17.14307 -16.88937 -16.83017 -16.33084 -16.27165 -16.01673 -15.80465 -15.33508 -15.07756 -14.84455 -14.71338 -14.59179 -14.37284 -14.27591 -14.03385 -13.80007 -13.53670 -13.28383 -13.20187 -13.07270 -12.93611 -12.90179 -12.69383 -12.61980 -12.50565 -12.46718 -12.12080 -11.89285 -11.81816 -11.71340 -11.57663 -11.45354 -11.21756 -11.15291 -10.87461 -10.27883 -9.89862 -9.72017 -9.24807 -8.68702 -8.35451 -6.14113 1.24380 1.35423 1.41643 1.44888 1.55240 1.56141 2.09340 2.26310 2.98484 3.13669 3.23781 3.57121 3.69922 3.91088 3.98921 4.00279 4.01833 4.17065 4.21835 4.24386 4.31139 4.36901 4.41205 4.42678 4.48294 4.52635 4.65966 4.68381 4.71689 4.73088 4.79409 4.80693 4.87829 4.96817 5.01597 5.03988 5.09355 5.15888 5.17455 5.19956 5.23146 5.29795 5.40403 5.46372 5.50187 5.65713 5.78124 6.01780 6.12257 6.18570 6.27409 6.47170 7.05454 7.13266 8.73746 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.002242 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.754366 B =12488.205905 C =14199.861243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.080 4.080 5 C 0.072 3.928 6 N -0.681 5.681 7 C 0.103 3.897 8 H 0.088 0.912 9 C -0.156 4.156 10 C 0.104 3.896 11 N -0.606 5.606 12 C 0.532 3.468 13 O -0.567 6.567 14 C -0.123 4.123 15 S -0.152 6.152 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.258 1.258 24 C 0.114 3.886 25 C -0.079 4.079 26 H 0.055 0.945 27 C -0.096 4.096 28 C -0.158 4.158 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.043 0.957 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 27.040 17.150 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.130 4.130 3 C -0.177 4.177 4 C -0.118 4.118 5 C -0.057 4.057 6 N -0.311 5.311 7 C -0.007 4.007 8 H 0.106 0.894 9 C -0.196 4.196 10 C -0.019 4.019 11 N -0.340 5.340 12 C 0.319 3.681 13 O -0.445 6.445 14 C -0.274 4.274 15 S 0.075 5.925 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.181 1.181 24 C -0.009 4.009 25 C -0.099 4.099 26 H 0.073 0.927 27 C -0.134 4.134 28 C -0.215 4.215 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.161 0.839 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.692 26.307 17.285 31.485 hybrid contribution -2.678 -0.532 -0.972 2.898 sum -3.370 25.775 16.313 30.689 Atomic orbital electron populations 1.23851 0.95422 1.02172 1.02678 1.21852 0.95485 0.96185 0.99507 1.20904 1.00346 0.93891 1.02571 1.20572 1.00169 0.94149 0.96874 1.21871 0.96214 0.91588 0.96022 1.60529 1.48158 1.05691 1.16699 1.21452 0.92870 0.97178 0.89212 0.89380 1.22681 0.99958 1.01314 0.95650 1.22034 0.84800 0.96965 0.98107 1.48123 1.13898 1.17192 1.54775 1.20134 0.88697 0.81127 0.78111 1.90670 1.32028 1.61278 1.60571 1.23359 0.99635 1.01214 1.03153 1.85604 1.19926 1.16477 1.70474 1.23179 0.97429 1.07657 1.41036 0.89937 1.26145 1.02003 0.95107 0.95968 1.70185 1.32498 1.10642 1.41394 0.84947 0.76920 0.77484 0.78581 1.19247 1.20298 1.18148 1.21821 0.87871 0.98338 0.92831 1.21411 0.96192 0.98383 0.93908 0.92655 1.21319 0.92890 0.97382 1.01819 1.21857 0.98852 0.99691 1.01093 0.88022 0.88620 0.91190 0.91761 0.91231 0.91578 0.90593 0.90874 0.95110 0.83876 0.92096 0.88877 0.89025 0.89466 0.87517 0.87714 0.91987 0.91196 0.90000 0.91566 0.89718 0.91769 0.93765 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 13.90 67.78 0.94 -1.28 16 2 C -0.13 -1.38 5.31 -16.49 -0.09 -1.47 16 3 C -0.12 -1.04 10.12 71.24 0.72 -0.32 16 4 C -0.08 -0.83 5.64 29.85 0.17 -0.66 16 5 C 0.07 0.75 5.47 86.30 0.47 1.22 16 6 N -0.68 -8.24 5.34 -491.44 -2.63 -10.87 16 7 C 0.10 1.44 1.89 44.94 0.08 1.53 16 8 H 0.09 1.14 7.80 -2.39 -0.02 1.12 16 9 C -0.16 -2.33 5.35 30.81 0.16 -2.16 16 10 C 0.10 1.98 6.37 86.51 0.55 2.53 16 11 N -0.61 -16.65 2.97 -818.07 -2.43 -19.08 16 12 C 0.53 20.66 7.72 87.66 0.68 21.34 16 13 O -0.57 -27.33 15.27 -3.02 -0.05 -27.38 16 14 C -0.12 -5.00 4.50 71.24 0.32 -4.68 16 15 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 16 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.72 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 20 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 C 0.11 2.72 5.32 86.36 0.46 3.18 16 25 C -0.08 -1.46 2.06 -10.72 -0.02 -1.49 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 C -0.10 -1.54 5.31 30.60 0.16 -1.38 16 28 C -0.16 -2.89 9.67 71.98 0.70 -2.19 16 29 H 0.10 0.97 7.83 -2.91 -0.02 0.94 16 30 H 0.10 1.02 7.99 -2.91 -0.02 0.99 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.50 7.78 -2.38 -0.02 0.48 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.70 7.99 -2.39 -0.02 0.68 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.78 8.05 -2.39 -0.02 0.76 16 37 H 0.03 0.34 7.41 -2.39 -0.02 0.32 16 38 H 0.34 4.19 8.48 -89.69 -0.76 3.43 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.06 7.42 -2.38 -0.02 1.05 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.75 5.93 -2.39 -0.01 1.73 16 43 H 0.11 3.94 7.93 -2.40 -0.02 3.92 16 44 H 0.10 3.90 7.70 -2.40 -0.02 3.88 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.07 2.10 5.72 -2.39 -0.01 2.09 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.08 1.33 7.42 -2.39 -0.02 1.31 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.04 0.89 6.70 -2.39 -0.02 0.88 16 Total: -1.00 -74.08 421.57 2.59 -71.49 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.12 Total: 21.22 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 6.42 Total: -15.31 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -4.77 Total: -85.95 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -74.08 2.59 -71.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723364417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.274 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds