Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.50702 * 109.46786 * 240.00497 * 2 1 3 5 5 O 1.21287 * 119.99721 * 271.19500 * 4 2 1 6 6 N 1.34772 * 120.00161 * 91.20375 * 4 2 1 7 7 C 1.46503 * 120.00057 * 354.78832 * 6 4 2 8 8 C 1.46498 * 119.99983 * 174.79279 * 6 4 2 9 9 C 1.50704 * 109.47265 * 89.99614 * 8 6 4 10 10 H 1.07996 * 119.99712 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00153 * 179.97438 * 9 8 6 12 12 N 1.31509 * 120.00110 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99883 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47200 * 89.99742 * 13 11 9 15 15 H 1.48501 * 109.47311 * 209.99779 * 13 11 9 16 16 H 1.48506 * 109.47484 * 329.99856 * 13 11 9 17 17 N 1.46897 * 109.47228 * 120.00242 * 2 1 3 18 18 C 1.46465 * 110.99871 * 172.73263 * 17 2 1 19 19 C 1.53265 * 109.89741 * 197.78524 * 18 17 2 20 20 S 1.81922 * 108.47383 * 297.96211 * 19 18 17 21 21 C 1.81792 * 101.90431 * 51.20743 * 20 19 18 22 22 C 1.52843 * 109.46461 * 68.57569 * 21 20 19 23 23 C 1.53029 * 109.48244 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.44600 * 300.18340 * 23 22 21 25 25 C 1.52996 * 109.49715 * 60.08386 * 24 23 22 26 26 C 1.52832 * 109.50684 * 188.96685 * 21 20 19 27 27 C 1.46499 * 110.99644 * 298.71573 * 17 2 1 28 28 H 1.08991 * 109.47341 * 178.42389 * 1 2 3 29 29 H 1.09006 * 109.47203 * 58.42321 * 1 2 3 30 30 H 1.09005 * 109.47026 * 298.42567 * 1 2 3 31 31 H 1.09001 * 109.47305 * 94.42616 * 7 6 4 32 32 H 1.08996 * 109.46972 * 214.42357 * 7 6 4 33 33 H 1.09002 * 109.46803 * 334.42560 * 7 6 4 34 34 H 1.08999 * 109.46871 * 209.99802 * 8 6 4 35 35 H 1.09006 * 109.47394 * 329.99732 * 8 6 4 36 36 H 0.97000 * 120.00043 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.40025 * 317.91662 * 18 17 2 38 38 H 1.09000 * 109.39798 * 77.65994 * 18 17 2 39 39 H 1.08998 * 109.63314 * 178.27025 * 19 18 17 40 40 H 1.08996 * 109.63385 * 57.65754 * 19 18 17 41 41 H 1.09006 * 109.47266 * 299.96127 * 22 21 20 42 42 H 1.09003 * 109.47304 * 59.95646 * 22 21 20 43 43 H 1.09000 * 109.47202 * 180.19650 * 23 22 21 44 44 H 1.09000 * 109.48063 * 60.18257 * 23 22 21 45 45 H 1.08999 * 109.46847 * 300.07600 * 24 23 22 46 46 H 1.08999 * 109.45879 * 180.09210 * 24 23 22 47 47 H 1.09007 * 109.47147 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47820 * 59.93500 * 25 24 23 49 49 H 1.08997 * 109.46713 * 300.09209 * 26 21 20 50 50 H 1.09001 * 109.46849 * 60.08693 * 26 21 20 51 51 H 1.08999 * 109.40371 * 282.52761 * 27 17 2 52 52 H 1.08998 * 109.40509 * 42.36884 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.2138 -1.9093 -1.2070 6 7 2.2800 -0.0133 -2.3571 7 6 1.9539 1.4135 -2.4224 8 6 2.8753 -0.6823 -3.5165 9 6 1.7817 -1.2305 -4.3965 10 1 0.7467 -1.0938 -4.1201 11 6 2.1024 -1.9056 -5.5551 12 7 1.1480 -2.3835 -6.3234 13 14 3.8926 -2.1415 -6.0336 14 1 4.3982 -3.4095 -5.4492 15 1 4.0062 -2.1984 -7.5132 16 1 4.6966 -1.0040 -5.5188 17 7 2.0197 -0.6925 1.1994 18 6 3.4735 -0.8637 1.1498 19 6 3.9059 -1.9435 2.1479 20 16 3.4591 -1.3923 3.8230 21 6 1.7073 -0.9517 3.6180 22 6 0.8889 -2.2187 3.3713 23 6 -0.5859 -1.8483 3.1993 24 6 -1.0870 -1.1512 4.4658 25 6 -0.2688 0.1188 4.7074 26 6 1.2065 -0.2501 4.8801 27 6 1.5752 -0.0107 2.4175 28 1 -0.3633 -1.0272 -0.0283 29 1 -0.3634 0.5382 -0.8755 30 1 -0.3633 0.4892 0.9038 31 1 2.8359 2.0000 -2.1650 32 1 1.6312 1.6666 -3.4322 33 1 1.1519 1.6354 -1.7183 34 1 3.4724 0.0332 -4.0819 35 1 3.5124 -1.4992 -3.1772 36 1 1.3736 -2.8588 -7.1383 37 1 3.7690 -1.1613 0.1438 38 1 3.9579 0.0791 1.4041 39 1 4.9844 -2.0889 2.0856 40 1 3.3934 -2.8783 1.9209 41 1 1.2470 -2.7124 2.4679 42 1 0.9977 -2.8927 4.2210 43 1 -1.1698 -2.7523 3.0269 44 1 -0.6951 -1.1770 2.3475 45 1 -0.9764 -1.8221 5.3177 46 1 -2.1379 -0.8887 4.3441 47 1 -0.6265 0.6154 5.6095 48 1 -0.3784 0.7894 3.8551 49 1 1.3168 -0.9176 5.7347 50 1 1.7900 0.6551 5.0484 51 1 2.1895 0.8745 2.5817 52 1 0.5328 0.2874 2.3056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079503666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -29.208220 kcal Electronic energy + Delta-G solvation = -29938.779262 eV Core-core repulsion = 26257.303311 eV Total energy + Delta-G solvation = -3681.475951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.32496 -39.04211 -36.75794 -34.91772 -32.95721 -32.27700 -31.67142 -30.93144 -29.14566 -28.24293 -26.54556 -25.86075 -23.57180 -23.07285 -22.41618 -22.03505 -21.02131 -18.90513 -18.32438 -17.38075 -16.98145 -16.57690 -16.04096 -15.51148 -15.23811 -14.87301 -14.73124 -14.33647 -14.23379 -14.11196 -13.88150 -13.67195 -13.32517 -13.08104 -12.94467 -12.77912 -12.40755 -12.36950 -12.32794 -12.12624 -11.98751 -11.93129 -11.70140 -11.55298 -11.48041 -11.34931 -11.25189 -11.10380 -10.91313 -10.56022 -10.49297 -10.39263 -10.19571 -10.13869 -9.56341 -9.51399 -8.97522 -8.61161 -8.33387 -7.75319 -7.70864 -6.10618 -4.09372 1.72104 2.47236 3.18822 3.26661 3.32257 3.34245 3.45615 3.94957 4.37171 4.41451 4.49062 4.69521 4.79080 4.84260 4.85934 5.01327 5.06556 5.09097 5.15826 5.21048 5.23412 5.27244 5.33427 5.35098 5.39839 5.47075 5.49099 5.51393 5.61902 5.66729 5.76583 5.78540 5.81382 5.83526 5.88082 5.93092 5.95426 5.96070 6.08773 6.12763 6.27260 6.34789 6.35370 6.61925 6.82096 6.91657 7.01344 7.28710 7.58099 8.18825 8.44392 8.90131 8.95423 9.49445 11.02822 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.003218 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.469888 B = 8700.265388 C = 9220.682663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.056 0.944 4 C 0.510 3.490 5 O -0.517 6.517 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.218 3.782 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.523 5.523 18 C 0.053 3.947 19 C -0.065 4.065 20 S -0.285 6.285 21 C -0.002 4.002 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.094 4.094 27 C 0.059 3.941 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.043 0.957 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 8.600 22.092 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 H 0.074 0.926 4 C 0.296 3.704 5 O -0.392 6.392 6 N -0.332 5.332 7 C -0.063 4.063 8 C 0.097 3.903 9 C -0.566 4.566 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.249 5.249 18 C -0.076 4.076 19 C -0.214 4.214 20 S -0.054 6.054 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.133 4.133 27 C -0.070 4.070 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.061 7.435 22.829 24.009 hybrid contribution 0.552 0.568 -1.566 1.755 sum 0.492 8.003 21.263 22.724 Atomic orbital electron populations 1.21858 0.92167 1.03994 1.01893 1.21604 0.97358 0.95702 0.89334 0.92583 1.20056 0.78819 0.87729 0.83836 1.90694 1.50916 1.13870 1.83706 1.47878 1.61816 1.09372 1.14135 1.21714 0.99346 0.81924 1.03363 1.19643 0.94575 0.92949 0.83092 1.21301 0.94144 1.35711 1.05405 0.90759 1.24858 0.97215 0.94841 0.96092 1.69892 1.32139 1.37389 1.14104 0.86864 0.85690 0.79377 0.77811 1.19908 1.21047 1.19145 1.60791 1.11953 1.51491 1.00633 1.22287 0.87165 0.97098 1.01044 1.23455 1.03984 1.01942 0.91987 1.86714 1.13807 1.86186 1.18665 1.22632 0.92423 0.98757 0.97415 1.21678 0.94219 0.94954 1.02849 1.21614 0.95622 1.00761 0.97782 1.21575 0.99007 0.96807 0.98460 1.21588 0.94157 0.97900 1.01802 1.21365 0.96114 1.00307 0.95551 1.22456 1.02048 0.94154 0.88341 0.90617 0.91270 0.91873 0.93759 0.90486 0.92023 0.95278 0.94802 0.92557 0.88557 0.94059 0.87844 0.88580 0.89954 0.91857 0.91822 0.91202 0.92064 0.92037 0.91652 0.91705 0.90968 0.91314 0.93930 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.27 37.16 0.31 -1.49 16 2 C 0.07 1.01 1.65 -68.86 -0.11 0.90 16 3 H 0.06 0.70 6.73 -51.93 -0.35 0.35 16 4 C 0.51 9.90 5.40 -10.99 -0.06 9.84 16 5 O -0.52 -12.23 15.10 5.55 0.08 -12.15 16 6 N -0.60 -11.89 2.86 -182.95 -0.52 -12.42 16 7 C 0.08 1.19 9.87 59.85 0.59 1.78 16 8 C 0.22 5.22 4.21 -5.19 -0.02 5.20 16 9 C -0.53 -14.97 9.94 -34.44 -0.34 -15.32 16 10 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 13 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 17 N -0.52 -7.04 3.23 -228.50 -0.74 -7.77 16 18 C 0.05 0.74 5.04 -3.92 -0.02 0.72 16 19 C -0.07 -0.84 6.33 37.29 0.24 -0.60 16 20 S -0.28 -3.46 21.16 -107.50 -2.27 -5.73 16 21 C 0.00 -0.02 0.61 -90.73 -0.06 -0.08 16 22 C -0.10 -1.09 4.50 -26.80 -0.12 -1.21 16 23 C -0.12 -1.15 5.66 -26.72 -0.15 -1.30 16 24 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 25 C -0.12 -0.85 5.65 -26.71 -0.15 -1.00 16 26 C -0.09 -0.82 4.75 -26.79 -0.13 -0.95 16 27 C 0.06 0.64 3.39 -3.99 -0.01 0.63 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 30 H 0.06 0.62 5.67 -51.93 -0.29 0.33 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.06 0.75 5.37 -51.93 -0.28 0.47 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.03 0.86 6.93 -51.93 -0.36 0.51 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.10 1.60 5.61 -51.93 -0.29 1.31 16 38 H 0.04 0.54 7.92 -51.93 -0.41 0.13 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.36 7.56 -51.93 -0.39 0.97 16 41 H 0.08 1.13 6.67 -51.93 -0.35 0.79 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.72 5.48 -51.93 -0.28 0.43 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.47 6.44 -51.93 -0.33 0.14 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.04 0.47 7.92 -51.93 -0.41 0.06 16 52 H 0.10 0.94 2.43 -51.93 -0.13 0.81 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -32.57 386.03 -10.68 -43.25 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.86 Total: 0.99 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.30 Total: -1.98 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.49 Total: -46.94 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.27 Total: -5.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.57 -10.68 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079503666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.047 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds