Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38339 * 119.93822 * 2 1 4 4 C 1.38298 * 120.23759 * 179.97438 * 3 2 1 5 5 C 1.38053 * 120.11122 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.05571 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47080 * 106.48008 * 6 5 4 8 8 C 1.46894 * 111.00042 * 183.62767 * 7 6 5 9 9 C 1.53242 * 109.34391 * 187.25566 * 8 7 6 10 10 N 1.47083 * 108.52052 * 306.17687 * 9 8 7 11 11 C 1.36937 * 120.87910 * 231.18346 * 10 9 8 12 12 H 1.08007 * 120.00036 * 30.79818 * 11 10 9 13 13 C 1.38814 * 120.00089 * 210.51811 * 11 10 9 14 14 N 1.31619 * 119.99803 * 15.86991 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 195.87288 * 13 11 10 16 16 H 1.48502 * 109.47220 * 90.00413 * 15 13 11 17 17 H 1.48501 * 109.46919 * 210.00134 * 15 13 11 18 18 H 1.48496 * 109.47389 * 329.99937 * 15 13 11 19 19 C 1.47081 * 118.23799 * 51.44946 * 10 9 8 20 20 C 1.46902 * 111.00407 * 307.93289 * 7 6 5 21 21 C 1.39277 * 119.88321 * 0.29584 * 5 4 3 22 22 C 1.48484 * 120.11354 * 179.70611 * 21 5 4 23 23 C 1.40837 * 126.21915 * 303.95110 * 22 21 5 24 24 N 1.30675 * 108.09737 * 179.97438 * 23 22 21 25 25 N 1.40013 * 108.52333 * 0.02562 * 24 23 22 26 26 C 1.46503 * 125.89644 * 179.97438 * 25 24 23 27 27 C 1.34827 * 108.20945 * 359.75560 * 25 24 23 28 28 C 1.38005 * 119.94109 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47021 * 90.00341 * 1 2 3 30 30 H 1.08999 * 109.47112 * 209.99667 * 1 2 3 31 31 H 1.08995 * 109.47393 * 329.99779 * 1 2 3 32 32 H 1.08005 * 119.88184 * 359.95754 * 3 2 1 33 33 H 1.07993 * 119.94305 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47044 * 346.48383 * 6 5 4 35 35 H 1.08993 * 109.46928 * 226.48372 * 6 5 4 36 36 H 1.09000 * 109.49245 * 67.30301 * 8 7 6 37 37 H 1.08999 * 109.49503 * 307.21754 * 8 7 6 38 38 H 1.08992 * 109.63729 * 186.46534 * 9 8 7 39 39 H 1.08994 * 109.78746 * 65.97283 * 9 8 7 40 40 H 0.96994 * 120.00203 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.62792 * 68.25905 * 19 10 9 42 42 H 1.09001 * 109.62420 * 188.83351 * 19 10 9 43 43 H 1.09001 * 109.48967 * 292.70872 * 20 7 6 44 44 H 1.09008 * 109.48980 * 52.75770 * 20 7 6 45 45 H 1.08001 * 125.95800 * 0.02562 * 23 22 21 46 46 H 1.09001 * 109.46733 * 90.02321 * 26 25 24 47 47 H 1.08996 * 109.46945 * 210.02681 * 26 25 24 48 48 H 1.09000 * 109.46978 * 330.02818 * 26 25 24 49 49 H 1.08004 * 126.19440 * 180.24170 * 27 25 24 50 50 H 1.08001 * 120.06169 * 0.02666 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2792 0.0154 0.0016 6 6 5.7862 0.0248 0.0028 7 7 6.2773 -0.3645 1.3314 8 6 7.7426 -0.2836 1.3956 9 6 8.2253 -0.8667 2.7280 10 7 7.5161 -0.1841 3.8209 11 6 8.2037 0.3628 4.8713 12 1 9.2005 0.7504 4.7210 13 6 7.6174 0.4242 6.1281 14 7 6.5542 -0.3046 6.3945 15 14 8.3372 1.5411 7.4410 16 1 7.7030 2.8810 7.3531 17 1 8.0793 0.9584 8.7823 18 1 9.8015 1.6717 7.2314 19 6 6.0485 -0.1097 3.7588 20 6 5.6521 0.4488 2.3829 21 6 3.5890 -1.1943 -0.0041 22 6 4.3355 -2.4778 -0.0096 23 6 5.3028 -2.8740 -0.9535 24 7 5.7312 -4.0629 -0.6212 25 7 5.0596 -4.4698 0.5380 26 6 5.2482 -5.7429 1.2380 27 6 4.2127 -3.4857 0.9017 28 6 2.1958 -1.1959 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6545 2.1324 -0.0007 33 1 4.1145 2.1446 0.0010 34 1 6.1435 1.0261 -0.2376 35 1 6.1545 -0.6809 -0.7418 36 1 8.0529 0.7587 1.3211 37 1 8.1747 -0.8519 0.5720 38 1 9.2983 -0.7057 2.8310 39 1 8.0102 -1.9346 2.7629 40 1 6.1447 -0.2620 7.2727 41 1 5.6255 -1.1059 3.8887 42 1 5.6819 0.5520 4.5435 43 1 5.9915 1.4808 2.2945 44 1 4.5680 0.4119 2.2750 45 1 5.6336 -2.2955 -1.8034 46 1 6.0313 -5.6325 1.9881 47 1 4.3167 -6.0313 1.7248 48 1 5.5372 -6.5120 0.5217 49 1 3.5548 -3.4946 1.7581 50 1 1.6559 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282818254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = 136.891333 kcal Electronic energy + Delta-G solvation = -30539.876862 eV Core-core repulsion = 26762.452328 eV Total energy + Delta-G solvation = -3777.424534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.03396 -39.35714 -37.68601 -34.74767 -33.47856 -32.61825 -31.64056 -31.00148 -29.79988 -28.91401 -28.31387 -26.53899 -25.98548 -23.96198 -22.81338 -22.44918 -22.11230 -20.96074 -20.58629 -19.59957 -18.95913 -16.84870 -16.66574 -15.71340 -15.57719 -15.16707 -15.07005 -14.82738 -14.46407 -14.22556 -13.96769 -13.70841 -13.59119 -13.34070 -13.32641 -13.00368 -12.91693 -12.83898 -12.61041 -12.48443 -12.29190 -12.17123 -11.85257 -11.50952 -11.26203 -11.05237 -11.01780 -10.81254 -10.72781 -10.48160 -10.35599 -10.22097 -9.99981 -9.70503 -9.51578 -9.20747 -8.89932 -8.46286 -8.43178 -7.81564 -7.58195 -6.55775 -5.74524 -3.18812 1.41773 1.53117 2.14728 2.68839 3.03971 3.39085 3.45777 3.47021 3.86493 4.52041 4.61739 4.66455 4.89774 4.95962 5.07622 5.09364 5.13176 5.19211 5.28540 5.31694 5.43208 5.45798 5.54576 5.54854 5.58319 5.67491 5.75127 5.83115 5.85524 5.89033 6.02087 6.05090 6.09871 6.25011 6.27685 6.30103 6.36787 6.44519 6.55570 6.64102 6.68605 6.80253 6.84475 6.89375 7.01417 7.15949 7.19262 7.31238 7.69577 7.75643 7.81435 7.88609 7.90655 8.50205 9.26236 9.88907 10.50485 11.33953 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.003969 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.545428 B = 7052.960870 C = 8373.087099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.067 4.067 6 C 0.094 3.906 7 N -0.515 5.515 8 C 0.047 3.953 9 C 0.153 3.847 10 N -0.594 5.594 11 C -0.253 4.253 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.902 5.902 15 Si 0.900 3.100 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.186 3.814 20 C 0.037 3.963 21 C 0.024 3.976 22 C -0.181 4.181 23 C 0.067 3.933 24 N -0.300 5.300 25 N -0.372 5.372 26 C 0.104 3.896 27 C 0.081 3.919 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.021 0.979 40 H 0.253 0.747 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.176 0.824 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.170 0.830 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 -4.329 -15.231 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.068 4.068 6 C -0.034 4.034 7 N -0.239 5.239 8 C -0.083 4.083 9 C 0.026 3.974 10 N -0.317 5.317 11 C -0.383 4.383 12 H 0.080 0.920 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.731 3.269 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.060 3.940 20 C -0.092 4.092 21 C 0.023 3.977 22 C -0.192 4.192 23 C -0.120 4.120 24 N -0.121 5.121 25 N -0.154 5.154 26 C -0.038 4.038 27 C -0.065 4.065 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.193 0.807 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.187 0.813 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.782 -5.967 -15.180 19.019 hybrid contribution 0.061 2.175 1.006 2.397 sum -9.721 -3.792 -14.174 17.601 Atomic orbital electron populations 1.20751 0.91585 1.02560 1.01881 1.19744 0.95687 0.93094 1.00525 1.20925 0.94006 0.97255 1.02203 1.20963 0.94064 0.97376 1.00298 1.19791 0.95306 0.92152 0.99548 1.21074 0.90464 0.98590 0.93271 1.62020 1.05931 1.54648 1.01342 1.22579 0.87467 0.98642 0.99604 1.20918 0.95150 0.94584 0.86739 1.44093 1.01850 1.63913 1.21855 1.19169 1.00285 1.31885 0.86952 0.91962 1.25091 0.98626 0.98853 0.96785 1.70028 1.23553 1.39676 1.21352 0.86320 0.78782 0.80593 0.81251 1.21481 1.21751 1.20454 1.20821 0.83690 0.98467 0.91043 1.22953 0.97756 0.94065 0.94422 1.17820 0.91509 0.90505 0.97900 1.18500 1.05198 0.95752 0.99742 1.23694 0.95524 0.93227 0.99514 1.77161 1.19302 1.15209 1.00456 1.48195 1.31179 1.14906 1.21095 1.21820 1.03220 0.82000 0.96748 1.22387 0.96003 0.88769 0.99378 1.21007 0.93096 0.97249 1.02019 0.91577 0.91763 0.91764 0.86549 0.86459 0.95348 0.90460 0.95674 0.92343 0.92932 0.96117 0.93720 0.95852 0.90355 0.96215 0.91926 0.80735 0.90536 0.89721 0.89649 0.81254 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -1.05 5.88 -104.67 -0.61 -1.67 16 3 C -0.13 -1.51 9.69 -39.52 -0.38 -1.90 16 4 C -0.11 -1.44 9.04 -39.63 -0.36 -1.80 16 5 C -0.07 -0.97 3.76 -104.30 -0.39 -1.36 16 6 C 0.09 1.42 4.58 -4.98 -0.02 1.40 16 7 N -0.51 -9.44 4.57 -235.47 -1.08 -10.52 16 8 C 0.05 0.88 5.62 -3.70 -0.02 0.86 16 9 C 0.15 3.42 6.69 -3.60 -0.02 3.40 16 10 N -0.59 -15.47 3.01 -171.73 -0.52 -15.99 16 11 C -0.25 -7.14 9.60 -15.06 -0.14 -7.28 16 12 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 13 C 0.01 0.15 4.93 -17.43 -0.09 0.06 16 14 N -0.90 -26.59 11.36 55.49 0.63 -25.96 16 15 Si 0.90 22.01 29.58 -169.99 -5.03 16.99 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.19 4.62 5.41 -3.37 -0.02 4.60 16 20 C 0.04 0.76 5.29 -3.46 -0.02 0.74 16 21 C 0.02 0.34 5.73 -104.88 -0.60 -0.26 16 22 C -0.18 -2.56 4.81 -105.34 -0.51 -3.06 16 23 C 0.07 0.94 10.35 -17.06 -0.18 0.76 16 24 N -0.30 -4.54 12.54 30.80 0.39 -4.16 16 25 N -0.37 -5.07 4.00 -67.89 -0.27 -5.34 16 26 C 0.10 1.00 11.46 59.85 0.69 1.68 16 27 C 0.08 1.12 11.42 -16.89 -0.19 0.92 16 28 C -0.12 -1.44 9.41 -39.26 -0.37 -1.81 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.46 7.99 -52.49 -0.42 1.04 16 34 H 0.03 0.42 7.94 -51.93 -0.41 0.01 16 35 H 0.08 1.10 5.63 -51.93 -0.29 0.81 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 2.16 6.37 -51.93 -0.33 1.82 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.23 6.20 -51.92 -0.32 0.91 16 45 H 0.18 2.07 7.34 -52.49 -0.39 1.68 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 50 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -32.75 399.24 -10.78 -43.53 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.03 Total: 0.74 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.88 Total: -5.31 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.85 Total: -61.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.75 -10.78 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282818254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.418 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds