Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38339 * 119.93822 * 2 1 4 4 C 1.38298 * 120.23759 * 179.97438 * 3 2 1 5 5 C 1.38053 * 120.11122 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.05571 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47080 * 106.48008 * 6 5 4 8 8 C 1.46894 * 111.00042 * 183.62767 * 7 6 5 9 9 C 1.53242 * 109.34391 * 187.25566 * 8 7 6 10 10 N 1.47083 * 108.52052 * 306.17687 * 9 8 7 11 11 C 1.36937 * 120.87910 * 231.18346 * 10 9 8 12 12 H 1.08007 * 120.00036 * 30.79818 * 11 10 9 13 13 C 1.38814 * 120.00089 * 210.51811 * 11 10 9 14 14 N 1.31619 * 119.99803 * 15.86991 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 195.87288 * 13 11 10 16 16 H 1.48502 * 109.47220 * 90.00413 * 15 13 11 17 17 H 1.48501 * 109.46919 * 210.00134 * 15 13 11 18 18 H 1.48496 * 109.47389 * 329.99937 * 15 13 11 19 19 C 1.47081 * 118.23799 * 51.44946 * 10 9 8 20 20 C 1.46902 * 111.00407 * 307.93289 * 7 6 5 21 21 C 1.39277 * 119.88321 * 0.29584 * 5 4 3 22 22 C 1.48484 * 120.11354 * 179.70611 * 21 5 4 23 23 C 1.40837 * 126.21915 * 303.95110 * 22 21 5 24 24 N 1.30675 * 108.09737 * 179.97438 * 23 22 21 25 25 N 1.40013 * 108.52333 * 0.02562 * 24 23 22 26 26 C 1.46503 * 125.89644 * 179.97438 * 25 24 23 27 27 C 1.34827 * 108.20945 * 359.75560 * 25 24 23 28 28 C 1.38005 * 119.94109 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47021 * 90.00341 * 1 2 3 30 30 H 1.08999 * 109.47112 * 209.99667 * 1 2 3 31 31 H 1.08995 * 109.47393 * 329.99779 * 1 2 3 32 32 H 1.08005 * 119.88184 * 359.95754 * 3 2 1 33 33 H 1.07993 * 119.94305 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47044 * 346.48383 * 6 5 4 35 35 H 1.08993 * 109.46928 * 226.48372 * 6 5 4 36 36 H 1.09000 * 109.49245 * 67.30301 * 8 7 6 37 37 H 1.08999 * 109.49503 * 307.21754 * 8 7 6 38 38 H 1.08992 * 109.63729 * 186.46534 * 9 8 7 39 39 H 1.08994 * 109.78746 * 65.97283 * 9 8 7 40 40 H 0.96994 * 120.00203 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.62792 * 68.25905 * 19 10 9 42 42 H 1.09001 * 109.62420 * 188.83351 * 19 10 9 43 43 H 1.09001 * 109.48967 * 292.70872 * 20 7 6 44 44 H 1.09008 * 109.48980 * 52.75770 * 20 7 6 45 45 H 1.08001 * 125.95800 * 0.02562 * 23 22 21 46 46 H 1.09001 * 109.46733 * 90.02321 * 26 25 24 47 47 H 1.08996 * 109.46945 * 210.02681 * 26 25 24 48 48 H 1.09000 * 109.46978 * 330.02818 * 26 25 24 49 49 H 1.08004 * 126.19440 * 180.24170 * 27 25 24 50 50 H 1.08001 * 120.06169 * 0.02666 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2792 0.0154 0.0016 6 6 5.7862 0.0248 0.0028 7 7 6.2773 -0.3645 1.3314 8 6 7.7426 -0.2836 1.3956 9 6 8.2253 -0.8667 2.7280 10 7 7.5161 -0.1841 3.8209 11 6 8.2037 0.3628 4.8713 12 1 9.2005 0.7504 4.7210 13 6 7.6174 0.4242 6.1281 14 7 6.5542 -0.3046 6.3945 15 14 8.3372 1.5411 7.4410 16 1 7.7030 2.8810 7.3531 17 1 8.0793 0.9584 8.7823 18 1 9.8015 1.6717 7.2314 19 6 6.0485 -0.1097 3.7588 20 6 5.6521 0.4488 2.3829 21 6 3.5890 -1.1943 -0.0041 22 6 4.3355 -2.4778 -0.0096 23 6 5.3028 -2.8740 -0.9535 24 7 5.7312 -4.0629 -0.6212 25 7 5.0596 -4.4698 0.5380 26 6 5.2482 -5.7429 1.2380 27 6 4.2127 -3.4857 0.9017 28 6 2.1958 -1.1959 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6545 2.1324 -0.0007 33 1 4.1145 2.1446 0.0010 34 1 6.1435 1.0261 -0.2376 35 1 6.1545 -0.6809 -0.7418 36 1 8.0529 0.7587 1.3211 37 1 8.1747 -0.8519 0.5720 38 1 9.2983 -0.7057 2.8310 39 1 8.0102 -1.9346 2.7629 40 1 6.1447 -0.2620 7.2727 41 1 5.6255 -1.1059 3.8887 42 1 5.6819 0.5520 4.5435 43 1 5.9915 1.4808 2.2945 44 1 4.5680 0.4119 2.2750 45 1 5.6336 -2.2955 -1.8034 46 1 6.0313 -5.6325 1.9881 47 1 4.3167 -6.0313 1.7248 48 1 5.5372 -6.5120 0.5217 49 1 3.5548 -3.4946 1.7581 50 1 1.6559 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282818254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = 118.466236 kcal Electronic energy + Delta-G solvation = -30540.675834 eV Core-core repulsion = 26762.452328 eV Total energy + Delta-G solvation = -3778.223506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.06330 -40.46138 -39.21031 -36.37331 -34.62435 -33.85076 -32.87375 -32.50978 -31.60067 -29.96728 -29.56470 -27.68561 -27.29912 -25.48745 -24.24106 -23.90796 -23.53298 -22.05594 -21.59827 -20.85546 -20.52376 -18.70828 -17.77446 -17.04646 -16.77813 -16.63897 -16.20313 -16.03378 -15.81687 -15.56435 -15.30808 -15.17662 -15.05082 -14.86908 -14.54309 -14.43237 -14.22928 -13.79328 -13.50457 -13.49583 -13.30250 -13.23349 -13.17878 -12.96670 -12.79133 -12.64976 -12.45619 -12.38615 -12.12364 -12.04425 -11.86009 -11.81629 -11.55858 -11.46727 -11.35324 -10.60430 -10.25767 -9.88998 -9.41790 -9.15276 -8.78609 -8.62910 -7.88922 -5.37870 0.43326 0.55598 1.10487 1.44827 1.46017 1.55146 1.77058 1.99835 2.48919 2.81959 3.23008 3.28962 3.68180 3.71539 3.92454 4.04131 4.08225 4.16122 4.22212 4.31154 4.35704 4.36120 4.38109 4.45928 4.53271 4.59395 4.66849 4.67426 4.71235 4.76645 4.80300 4.87328 4.88923 4.89775 4.93017 5.02108 5.05625 5.15759 5.17133 5.31661 5.32976 5.39418 5.57068 5.60792 5.64317 5.74363 5.86243 5.86646 6.19873 6.22007 6.26095 6.34949 6.38348 6.84306 7.12417 7.81339 8.38898 9.17448 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.003969 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.545428 B = 7052.960870 C = 8373.087099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.087 4.087 6 C 0.100 3.900 7 N -0.519 5.519 8 C 0.058 3.942 9 C 0.152 3.848 10 N -0.610 5.610 11 C -0.270 4.270 12 H 0.063 0.937 13 C -0.044 4.044 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.269 1.269 19 C 0.198 3.802 20 C 0.062 3.938 21 C 0.015 3.985 22 C -0.189 4.189 23 C 0.061 3.939 24 N -0.327 5.327 25 N -0.377 5.377 26 C 0.096 3.904 27 C 0.069 3.931 28 C -0.122 4.122 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.251 0.749 41 H -0.006 1.006 42 H 0.046 0.954 43 H 0.012 0.988 44 H 0.071 0.929 45 H 0.191 0.809 46 H 0.068 0.932 47 H 0.111 0.889 48 H 0.097 0.903 49 H 0.182 0.818 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 -3.646 -16.291 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.027 4.027 7 N -0.244 5.244 8 C -0.071 4.071 9 C 0.026 3.974 10 N -0.334 5.334 11 C -0.400 4.400 12 H 0.081 0.919 13 C -0.240 4.240 14 N -0.578 5.578 15 Si 0.795 3.205 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.193 1.193 19 C 0.072 3.928 20 C -0.068 4.068 21 C 0.013 3.987 22 C -0.200 4.200 23 C -0.125 4.125 24 N -0.148 5.148 25 N -0.158 5.158 26 C -0.044 4.044 27 C -0.078 4.078 28 C -0.141 4.141 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.090 0.910 45 H 0.208 0.792 46 H 0.087 0.913 47 H 0.130 0.870 48 H 0.116 0.884 49 H 0.199 0.801 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.583 -5.294 -16.275 20.122 hybrid contribution 0.272 1.891 1.310 2.316 sum -10.312 -3.403 -14.965 18.490 Atomic orbital electron populations 1.20806 0.89435 1.03388 1.03030 1.20113 0.97320 0.92614 0.98905 1.21214 0.93695 0.98407 1.01581 1.21117 0.94840 0.97237 1.00293 1.19755 0.94696 0.92838 1.01452 1.21065 0.91366 0.99109 0.91172 1.61930 1.05445 1.54432 1.02583 1.22396 0.87996 0.98580 0.98136 1.21009 0.95266 0.93573 0.87551 1.44346 1.02326 1.64419 1.22352 1.19491 1.00588 1.32054 0.87860 0.91903 1.25860 0.99153 1.00161 0.98820 1.70183 1.24890 1.41087 1.21678 0.85274 0.78500 0.78499 0.78206 1.21077 1.21882 1.19346 1.20540 0.83251 0.96209 0.92810 1.22527 0.98263 0.93344 0.92636 1.17929 0.92222 0.90229 0.98304 1.18648 1.05440 0.96051 0.99890 1.23988 0.95393 0.93111 0.99969 1.77097 1.20283 1.15928 1.01521 1.48502 1.30723 1.15791 1.20802 1.22092 1.04529 0.80972 0.96813 1.22697 0.96313 0.89006 0.99744 1.21213 0.92704 0.98279 1.01869 0.90155 0.91075 0.90858 0.84504 0.85928 0.94708 0.89363 0.95809 0.89773 0.92565 0.97720 0.94023 0.98783 0.93556 0.96936 0.91031 0.79183 0.91291 0.87035 0.88418 0.80109 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 71.24 0.71 -0.91 16 2 C -0.09 -1.88 5.88 -19.89 -0.12 -2.00 16 3 C -0.13 -2.87 9.69 22.31 0.22 -2.65 16 4 C -0.12 -2.90 9.04 22.24 0.20 -2.70 16 5 C -0.09 -2.38 3.76 -19.66 -0.07 -2.45 16 6 C 0.10 2.89 4.58 85.56 0.39 3.28 16 7 N -0.52 -18.68 4.57 -898.89 -4.10 -22.78 16 8 C 0.06 2.15 5.62 86.39 0.49 2.63 16 9 C 0.15 6.84 6.69 86.35 0.58 7.42 16 10 N -0.61 -32.42 3.01 -697.24 -2.10 -34.52 16 11 C -0.27 -15.41 9.60 84.03 0.81 -14.61 16 12 H 0.06 3.51 7.88 -2.91 -0.02 3.49 16 13 C -0.04 -2.51 4.93 84.86 0.42 -2.09 16 14 N -0.93 -56.36 11.36 21.65 0.25 -56.12 16 15 Si 0.97 45.61 29.58 68.60 2.03 47.64 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.20 10.14 5.41 86.50 0.47 10.61 16 20 C 0.06 2.52 5.29 86.53 0.46 2.98 16 21 C 0.01 0.40 5.73 -20.03 -0.11 0.28 16 22 C -0.19 -5.20 4.81 -20.33 -0.10 -5.30 16 23 C 0.06 1.67 10.35 85.50 0.88 2.55 16 24 N -0.33 -9.71 12.54 -56.46 -0.71 -10.42 16 25 N -0.38 -10.06 4.00 -368.71 -1.48 -11.53 16 26 C 0.10 1.78 11.46 127.77 1.46 3.25 16 27 C 0.07 1.88 11.42 83.81 0.96 2.83 16 28 C -0.12 -2.85 9.41 22.48 0.21 -2.64 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.12 2.85 7.99 -2.91 -0.02 2.83 16 34 H 0.03 0.97 7.94 -2.38 -0.02 0.95 16 35 H 0.09 2.36 5.63 -2.39 -0.01 2.35 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 2.69 8.11 -2.39 -0.02 2.68 16 38 H 0.06 2.44 7.95 -2.39 -0.02 2.42 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.05 2.64 6.37 -2.39 -0.02 2.63 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 2.80 6.20 -2.38 -0.01 2.79 16 45 H 0.19 4.28 7.34 -2.91 -0.02 4.26 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 50 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.03 399.24 2.65 -68.38 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.92 Total: 18.88 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 7.85 Total: 0.48 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -8.14 Total: -135.37 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.03 2.65 -68.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282818254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.847 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds