Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38369 * 119.93097 * 2 1 4 4 C 1.38320 * 120.28092 * 179.72470 * 3 2 1 5 5 C 1.37999 * 120.13673 * 0.54596 * 4 3 2 6 6 C 1.50700 * 120.07266 * 179.75256 * 5 4 3 7 7 N 1.46898 * 109.46878 * 266.11014 * 6 5 4 8 8 C 1.46898 * 111.00255 * 184.29792 * 7 6 5 9 9 C 1.53237 * 109.34345 * 187.25133 * 8 7 6 10 10 N 1.47076 * 108.51977 * 306.16631 * 9 8 7 11 11 C 1.36933 * 120.88369 * 231.18174 * 10 9 8 12 12 H 1.08007 * 119.99592 * 26.27359 * 11 10 9 13 13 C 1.38809 * 120.00541 * 205.99388 * 11 10 9 14 14 N 1.31625 * 119.99373 * 17.75241 * 13 11 10 15 15 Si 1.86797 * 120.00373 * 197.75177 * 13 11 10 16 16 H 1.48500 * 109.47253 * 94.98755 * 15 13 11 17 17 H 1.48501 * 109.46810 * 214.98543 * 15 13 11 18 18 H 1.48500 * 109.46847 * 334.98248 * 15 13 11 19 19 C 1.47082 * 118.23538 * 51.46200 * 10 9 8 20 20 C 1.46902 * 110.99828 * 308.59736 * 7 6 5 21 21 C 1.39487 * 119.85906 * 359.47569 * 5 4 3 22 22 C 1.47975 * 120.14006 * 180.22880 * 21 5 4 23 23 C 1.36628 * 126.33688 * 53.75018 * 22 21 5 24 24 C 1.39503 * 107.84919 * 179.88254 * 23 22 21 25 25 N 1.30887 * 108.59591 * 0.39344 * 24 23 22 26 26 N 1.36285 * 126.34061 * 234.06674 * 22 21 5 27 27 C 1.46501 * 126.13877 * 359.97438 * 26 22 21 28 28 C 1.37955 * 119.93297 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47520 * 269.97958 * 1 2 3 30 30 H 1.09002 * 109.47189 * 29.98512 * 1 2 3 31 31 H 1.09005 * 109.46565 * 149.98282 * 1 2 3 32 32 H 1.08006 * 119.85684 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.93406 * 180.27928 * 4 3 2 34 34 H 1.08993 * 109.47638 * 146.10911 * 6 5 4 35 35 H 1.09000 * 109.46818 * 26.10624 * 6 5 4 36 36 H 1.09001 * 109.49422 * 67.29002 * 8 7 6 37 37 H 1.09001 * 109.51287 * 307.22765 * 8 7 6 38 38 H 1.09004 * 109.62616 * 186.46112 * 9 8 7 39 39 H 1.08999 * 109.78725 * 65.97252 * 9 8 7 40 40 H 0.96999 * 119.99662 * 179.97438 * 14 13 11 41 41 H 1.08999 * 109.62898 * 68.24793 * 19 10 9 42 42 H 1.08998 * 109.62773 * 188.82872 * 19 10 9 43 43 H 1.08999 * 109.49494 * 292.70476 * 20 7 6 44 44 H 1.08995 * 109.49249 * 52.76208 * 20 7 6 45 45 H 1.08001 * 126.07354 * 0.02562 * 23 22 21 46 46 H 1.08001 * 125.70035 * 180.15034 * 24 23 22 47 47 H 1.08997 * 109.47242 * 94.43697 * 27 26 22 48 48 H 1.09009 * 109.46850 * 214.43627 * 27 26 22 49 49 H 1.09001 * 109.47053 * 334.43144 * 27 26 22 50 50 H 1.08003 * 120.07170 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5806 1.2076 0.0057 5 6 4.2807 0.0184 0.0001 6 6 5.7877 0.0294 0.0008 7 7 6.2785 -0.0542 -1.3813 8 6 7.7440 -0.1487 -1.4147 9 6 8.2260 -0.0514 -2.8661 10 7 7.5191 -1.0662 -3.6621 11 6 8.2085 -1.9354 -4.4647 12 1 9.2320 -2.1897 -4.2315 13 6 7.5902 -2.4943 -5.5747 14 7 6.4957 -1.9495 -6.0623 15 14 8.3114 -4.0196 -6.3766 16 1 7.6395 -5.2281 -5.8351 17 1 8.1018 -3.9528 -7.8452 18 1 9.7661 -4.0902 -6.0869 19 6 6.0516 -1.1185 -3.5780 20 6 5.6557 -1.1777 -2.0940 21 6 3.5906 -1.1938 -0.0003 22 6 4.3352 -2.4726 -0.0012 23 6 5.3052 -2.8452 0.8859 24 6 5.7428 -4.1211 0.5300 25 7 5.0797 -4.5093 -0.5296 26 7 4.1845 -3.4942 -0.8905 27 6 3.2533 -3.5252 -2.0211 28 6 2.1954 -1.1955 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6539 2.1325 0.0004 33 1 4.1137 2.1468 0.0103 34 1 6.1571 -0.8238 0.5697 35 1 6.1441 0.9526 0.4577 36 1 8.0568 -1.1030 -0.9909 37 1 8.1748 0.6662 -0.8329 38 1 9.2995 -0.2352 -2.9085 39 1 8.0085 0.9409 -3.2613 40 1 6.0638 -2.3398 -6.8382 41 1 5.6265 -0.2266 -4.0382 42 1 5.6869 -2.0082 -4.0914 43 1 5.9975 -2.1177 -1.6608 44 1 4.5716 -1.1089 -2.0047 45 1 5.6670 -2.2575 1.7166 46 1 6.5045 -4.6915 1.0409 47 1 3.7648 -3.1875 -2.9224 48 1 2.8934 -4.5437 -2.1676 49 1 2.4089 -2.8676 -1.8145 50 1 1.6554 -2.1309 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338949079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = 146.788477 kcal Electronic energy + Delta-G solvation = -31485.832639 eV Core-core repulsion = 27708.837277 eV Total energy + Delta-G solvation = -3776.995362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.33712 -39.37962 -37.76549 -34.85667 -33.33989 -32.98995 -31.77304 -31.07332 -29.80475 -28.83727 -28.40944 -26.58793 -26.14594 -24.13899 -23.14590 -22.46197 -22.29467 -21.14733 -20.67276 -19.37452 -19.01432 -16.96550 -16.65404 -16.05346 -15.69980 -15.30021 -14.96167 -14.75173 -14.47132 -14.04771 -13.98240 -13.87090 -13.75039 -13.59284 -13.37458 -13.13721 -12.98188 -12.94778 -12.52927 -12.42577 -12.33166 -12.22681 -11.88838 -11.60478 -11.33651 -11.15017 -11.06668 -10.91838 -10.71488 -10.47720 -10.40713 -10.23842 -10.01319 -9.72244 -9.58873 -9.29763 -8.75648 -8.59727 -8.46710 -8.24640 -7.58950 -6.62534 -5.74321 -3.14035 1.00844 1.31015 2.10316 2.70532 3.00905 3.40741 3.47660 3.48696 3.64675 4.41310 4.52728 4.61089 4.70240 4.73743 4.80007 4.91839 5.10298 5.26583 5.28915 5.35964 5.41955 5.42542 5.48998 5.50075 5.59113 5.65889 5.70927 5.71778 5.79845 5.81346 5.96494 5.99271 6.02694 6.05960 6.13922 6.21175 6.29710 6.37808 6.46070 6.47354 6.58100 6.60480 6.75884 6.81119 6.89053 6.96991 7.14532 7.29005 7.64923 7.68642 7.76484 7.86616 7.89665 8.46828 9.25197 9.89086 10.47335 11.34275 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.004286 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.522140 B = 6530.906486 C = 6947.006883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.111 4.111 4 C -0.095 4.095 5 C -0.045 4.045 6 C 0.076 3.924 7 N -0.523 5.523 8 C 0.046 3.954 9 C 0.150 3.850 10 N -0.593 5.593 11 C -0.247 4.247 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.899 3.101 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.181 3.819 20 C 0.033 3.967 21 C -0.025 4.025 22 C 0.133 3.867 23 C -0.263 4.263 24 C 0.042 3.958 25 N -0.283 5.283 26 N -0.357 5.357 27 C 0.093 3.907 28 C -0.108 4.108 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.252 0.748 41 H 0.021 0.979 42 H 0.085 0.915 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.144 0.856 46 H 0.180 0.820 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 3.818 16.001 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.114 4.114 5 C -0.047 4.047 6 C -0.051 4.051 7 N -0.248 5.248 8 C -0.083 4.083 9 C 0.023 3.977 10 N -0.317 5.317 11 C -0.377 4.377 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.550 5.550 15 Si 0.729 3.271 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.055 3.945 20 C -0.095 4.095 21 C -0.028 4.028 22 C 0.006 3.994 23 C -0.292 4.292 24 C -0.142 4.142 25 N -0.105 5.105 26 N -0.139 5.139 27 C -0.048 4.048 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.162 0.838 46 H 0.197 0.803 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.271 3.200 14.600 18.720 hybrid contribution 0.712 -0.870 0.450 1.211 sum -10.558 2.329 15.049 18.531 Atomic orbital electron populations 1.20771 0.91083 1.02838 1.02187 1.19747 0.96002 0.92807 1.00456 1.21105 0.94167 0.97430 1.00273 1.20952 0.93763 0.97578 0.99080 1.19803 0.95790 0.91603 0.97474 1.21309 0.89892 1.01683 0.92194 1.62127 1.06499 1.44763 1.11409 1.22602 0.87058 0.98793 0.99883 1.20959 0.95330 0.92654 0.88775 1.44112 1.01914 1.35474 1.50165 1.19217 0.97495 1.17849 1.03117 0.91712 1.24953 0.98490 1.00063 0.96134 1.70048 1.21546 1.39327 1.24040 0.86310 0.78760 0.83654 0.78348 1.21531 1.21784 1.20417 1.20942 0.83772 1.00913 0.88919 1.23204 0.97229 0.90714 0.98401 1.17919 0.92255 0.89746 1.02855 1.19387 0.98279 0.89390 0.92390 1.21288 1.03854 0.98659 1.05384 1.23622 0.99950 0.95712 0.94952 1.77377 1.05631 1.11461 1.16005 1.48797 1.30513 1.11866 1.22755 1.22001 0.91430 1.04094 0.87280 1.20979 0.92507 0.97783 1.01358 0.91290 0.91413 0.91646 0.85905 0.85364 0.92942 0.90586 0.95410 0.92089 0.92703 0.95754 0.93789 0.96074 0.89706 0.94975 0.92492 0.83803 0.80328 0.89542 0.89473 0.89633 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.95 5.87 -104.68 -0.61 -1.57 16 3 C -0.11 -1.20 9.69 -39.50 -0.38 -1.58 16 4 C -0.10 -1.16 9.67 -39.64 -0.38 -1.54 16 5 C -0.05 -0.63 4.54 -104.24 -0.47 -1.11 16 6 C 0.08 1.14 5.04 -4.98 -0.03 1.12 16 7 N -0.52 -9.67 4.73 -235.47 -1.11 -10.78 16 8 C 0.05 0.86 5.61 -3.70 -0.02 0.84 16 9 C 0.15 3.31 6.69 -3.61 -0.02 3.28 16 10 N -0.59 -15.59 3.03 -171.73 -0.52 -16.11 16 11 C -0.25 -7.04 9.64 -15.06 -0.15 -7.19 16 12 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 13 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 14 N -0.90 -26.77 11.13 55.49 0.62 -26.15 16 15 Si 0.90 22.44 29.59 -169.99 -5.03 17.41 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C 0.18 4.55 5.46 -3.36 -0.02 4.53 16 20 C 0.03 0.69 3.58 -3.46 -0.01 0.68 16 21 C -0.03 -0.35 4.08 -104.96 -0.43 -0.78 16 22 C 0.13 2.02 3.29 -82.48 -0.27 1.75 16 23 C -0.26 -3.87 8.65 -39.69 -0.34 -4.21 16 24 C 0.04 0.65 11.99 -17.48 -0.21 0.44 16 25 N -0.28 -4.99 12.56 30.56 0.38 -4.61 16 26 N -0.36 -5.79 3.02 -64.16 -0.19 -5.98 16 27 C 0.09 1.30 10.62 59.85 0.64 1.94 16 28 C -0.11 -1.29 8.08 -39.21 -0.32 -1.60 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.05 0.79 4.85 -51.93 -0.25 0.54 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.05 1.16 7.95 -51.93 -0.41 0.75 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 2.36 6.07 -51.93 -0.32 2.05 16 43 H 0.03 0.72 6.14 -51.93 -0.32 0.40 16 44 H 0.06 1.12 4.51 -51.93 -0.23 0.88 16 45 H 0.14 1.84 7.27 -52.49 -0.38 1.46 16 46 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 48 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 49 H 0.09 0.99 5.92 -51.93 -0.31 0.68 16 50 H 0.12 1.29 7.47 -52.48 -0.39 0.89 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -33.14 384.50 -10.47 -43.60 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.64 Total: 2.37 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.76 Total: -5.55 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.83 Total: -63.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.14 -10.47 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338949079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.393 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds