Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46949 * 2 1 4 4 C 1.46952 * 111.00362 * 46.19949 * 3 2 1 5 5 C 1.53046 * 109.36756 * 183.18773 * 4 3 2 6 6 N 1.46952 * 109.36419 * 301.59793 * 5 4 3 7 7 C 1.46902 * 110.99890 * 183.18843 * 6 5 4 8 8 C 1.50702 * 109.47254 * 66.19806 * 7 6 5 9 9 C 1.38634 * 119.74893 * 269.72624 * 8 7 6 10 10 C 1.37620 * 120.24422 * 179.72225 * 9 8 7 11 11 C 1.40714 * 119.74491 * 0.52778 * 10 9 8 12 12 C 1.41401 * 120.24011 * 179.72632 * 11 10 9 13 13 H 1.08001 * 119.99645 * 155.30822 * 12 11 10 14 14 C 1.39939 * 120.00165 * 335.30964 * 12 11 10 15 15 N 1.30823 * 120.00042 * 342.23562 * 14 12 11 16 16 Si 1.86807 * 119.99920 * 162.23367 * 14 12 11 17 17 H 1.48498 * 109.46890 * 94.66575 * 16 14 12 18 18 H 1.48497 * 109.47056 * 214.66295 * 16 14 12 19 19 H 1.48495 * 109.46994 * 334.66512 * 16 14 12 20 20 C 1.40709 * 119.51383 * 359.74430 * 11 10 9 21 21 C 1.37621 * 119.74655 * 0.02562 * 20 11 10 22 22 C 1.46954 * 110.88371 * 59.31866 * 6 5 4 23 23 C 1.46960 * 110.99721 * 169.99588 * 3 2 1 24 24 H 1.08994 * 109.50796 * 296.78926 * 23 3 2 25 25 C 1.50704 * 109.49134 * 56.84611 * 23 3 2 26 26 N 1.30500 * 125.64804 * 24.90905 * 25 23 3 27 27 C 1.34130 * 109.25518 * 179.97438 * 26 25 23 28 28 C 1.34668 * 108.01683 * 0.02562 * 27 26 25 29 29 N 1.35038 * 125.64945 * 204.89044 * 25 23 3 30 30 H 0.97000 * 126.39949 * 0.05120 * 29 25 23 31 31 H 1.08996 * 109.47818 * 300.00338 * 1 2 3 32 32 H 1.09006 * 109.46804 * 60.00508 * 1 2 3 33 33 H 1.08998 * 109.46836 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47818 * 239.99662 * 2 1 3 35 35 H 1.09006 * 109.46804 * 119.99492 * 2 1 3 36 36 H 1.09002 * 109.48938 * 63.21411 * 4 3 2 37 37 H 1.09010 * 109.48672 * 303.15625 * 4 3 2 38 38 H 1.09006 * 109.49001 * 181.62549 * 5 4 3 39 39 H 1.09005 * 109.50876 * 61.57807 * 5 4 3 40 40 H 1.09005 * 109.46929 * 186.19961 * 7 6 5 41 41 H 1.08997 * 109.46963 * 306.19583 * 7 6 5 42 42 H 1.07997 * 119.87511 * 359.97438 * 9 8 7 43 43 H 1.08001 * 120.12456 * 180.27817 * 10 9 8 44 44 H 0.96998 * 119.99981 * 180.02562 * 15 14 12 45 45 H 1.07998 * 120.12888 * 179.97438 * 20 11 10 46 46 H 1.07990 * 119.87704 * 179.97438 * 21 20 11 47 47 H 1.08994 * 109.48827 * 180.71144 * 22 6 5 48 48 H 1.08999 * 109.50582 * 60.65743 * 22 6 5 49 49 H 1.08000 * 125.98910 * 179.97438 * 27 26 25 50 50 H 1.08005 * 126.58776 * 179.73000 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2999 2.1981 0.9902 5 6 1.7825 3.6479 0.9036 6 7 3.2318 3.6941 1.1419 7 6 3.7214 5.0791 1.1419 8 6 3.1436 5.8162 2.3225 9 6 1.9397 6.4908 2.1902 10 6 1.3999 7.1625 3.2633 11 6 2.0803 7.1721 4.4949 12 6 1.5381 7.8637 5.6027 13 1 1.8055 7.5691 6.6067 14 6 0.6551 8.9299 5.3980 15 7 0.5938 9.5132 4.2286 16 14 -0.4361 9.5202 6.7946 17 1 0.2225 10.6537 7.4920 18 1 -1.7421 9.9673 6.2472 19 1 -0.6560 8.4088 7.7545 20 6 3.3044 6.4887 4.6160 21 6 3.8231 5.8196 3.5310 22 6 3.9516 2.8810 0.1518 23 6 3.4690 1.4312 0.2383 24 1 3.6877 1.0336 1.2294 25 6 4.1765 0.6028 -0.8030 26 7 3.7190 0.3246 -1.9932 27 6 4.6141 -0.4321 -2.6453 28 6 5.6658 -0.6308 -1.8281 29 7 5.3889 0.0258 -0.6594 30 1 5.9571 0.0681 0.1256 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.4936 1.8094 1.9899 37 1 0.2300 2.1580 0.7851 38 1 1.2707 4.2471 1.6568 39 1 1.5640 4.0458 -0.0874 40 1 4.8094 5.0799 1.2101 41 1 3.4149 5.5728 0.2198 42 1 1.4216 6.4858 1.2427 43 1 0.4597 7.6836 3.1592 44 1 -0.0179 10.2524 4.0868 45 1 3.8352 6.4899 5.5565 46 1 4.7625 5.2948 3.6214 47 1 5.0214 2.9211 0.3569 48 1 3.7582 3.2696 -0.8481 49 1 4.5092 -0.8156 -3.6495 50 1 6.5551 -1.2020 -2.0505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348366772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = 98.210692 kcal Electronic energy + Delta-G solvation = -29438.317349 eV Core-core repulsion = 25659.215496 eV Total energy + Delta-G solvation = -3779.101853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.25865 -39.37275 -37.64656 -35.73588 -33.69347 -32.67911 -32.36241 -30.95923 -29.86520 -29.24582 -28.54727 -27.22702 -25.24557 -23.99415 -23.11967 -21.67864 -21.46413 -21.11155 -20.71017 -19.77703 -19.45170 -18.13336 -17.28527 -16.10902 -15.61851 -15.27375 -15.17412 -14.86656 -14.69293 -14.61735 -14.20168 -14.03795 -13.89873 -13.77669 -13.59453 -13.39883 -12.96226 -12.74701 -12.43869 -12.03584 -11.94556 -11.81119 -11.57433 -11.37842 -11.30625 -11.17911 -10.98472 -10.97325 -10.78985 -10.55693 -10.47390 -10.34847 -10.12020 -9.99988 -9.56545 -9.37691 -9.11480 -8.57131 -8.29189 -7.98550 -7.41681 -7.28005 -6.76022 -4.34058 1.84884 2.72906 2.83434 3.00001 3.06597 3.09056 3.11073 3.18662 3.85704 3.93079 4.09419 4.43706 4.69457 4.80160 4.93249 5.01955 5.09411 5.13848 5.21522 5.38298 5.42412 5.45384 5.49032 5.57669 5.62655 5.73456 5.77954 5.84447 5.90588 5.93642 5.99975 6.11028 6.13014 6.23773 6.25607 6.36185 6.39327 6.41603 6.58024 6.94766 6.97267 7.06146 7.08371 7.17265 7.26651 7.38393 7.42284 7.43940 7.63035 7.89647 8.00926 8.06531 8.15260 8.31541 8.65030 8.90682 8.98916 10.18576 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.002335 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.247007 B =11987.004357 C =12728.656754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 N -0.515 5.515 4 C 0.054 3.946 5 C 0.056 3.944 6 N -0.532 5.532 7 C 0.122 3.878 8 C -0.207 4.207 9 C -0.093 4.093 10 C -0.165 4.165 11 C 0.113 3.887 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.229 4.229 21 C -0.069 4.069 22 C 0.066 3.934 23 C 0.177 3.823 24 H 0.061 0.939 25 C 0.217 3.783 26 N -0.461 5.461 27 C -0.033 4.033 28 C -0.060 4.060 29 N -0.567 5.567 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.022 0.978 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.168 0.832 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -17.369 -9.256 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.076 4.076 3 N -0.240 5.240 4 C -0.074 4.074 5 C -0.072 4.072 6 N -0.256 5.256 7 C -0.004 4.004 8 C -0.209 4.209 9 C -0.112 4.112 10 C -0.185 4.185 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.248 4.248 21 C -0.088 4.088 22 C -0.063 4.063 23 C 0.066 3.934 24 H 0.079 0.921 25 C -0.048 4.048 26 N -0.180 5.180 27 C -0.182 4.182 28 C -0.194 4.194 29 N -0.170 5.170 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.185 0.815 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.500 -16.917 -9.756 20.040 hybrid contribution 0.774 0.023 1.167 1.400 sum 5.274 -16.894 -8.589 19.672 Atomic orbital electron populations 1.21913 0.95040 1.01564 1.02604 1.22148 0.95649 0.88930 1.00827 1.62021 1.01253 1.11211 1.49564 1.22349 0.98589 0.93240 0.93190 1.22235 0.88659 0.95575 1.00766 1.62296 1.04011 1.12090 1.47235 1.20707 0.98152 0.85597 0.95963 1.18801 0.99462 1.07903 0.94699 1.20523 0.95266 0.98259 0.97174 1.21274 1.01016 1.02736 0.93440 1.17615 0.89457 0.89108 0.92803 1.19588 1.22859 1.12552 0.94262 0.90550 1.25901 0.96068 0.95575 0.96587 1.69828 1.30789 1.17531 1.23703 0.86350 0.79568 0.79497 0.81613 1.19624 1.20046 1.18449 1.20954 0.98026 1.08235 0.97635 1.20296 0.97629 0.97954 0.92909 1.22072 0.97821 0.91100 0.95329 1.19819 0.88148 0.93531 0.91906 0.92127 1.23036 0.85225 1.00732 0.95813 1.70359 1.29264 1.15022 1.03306 1.22461 0.91958 1.02870 1.00887 1.22734 1.03389 1.05539 0.87738 1.43275 1.17651 1.40688 1.15368 0.74424 0.92336 0.91607 0.92543 0.89499 0.95970 0.94014 0.89394 0.88608 0.94429 0.91851 0.95521 0.89814 0.86606 0.90925 0.89220 0.89669 0.91021 0.93637 0.81471 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.17 37.16 0.34 -1.24 16 2 C 0.05 0.62 5.37 -3.82 -0.02 0.60 16 3 N -0.51 -6.80 4.54 -227.88 -1.03 -7.84 16 4 C 0.05 0.73 4.93 -3.77 -0.02 0.71 16 5 C 0.06 0.87 5.26 -3.77 -0.02 0.85 16 6 N -0.53 -8.40 4.70 -235.91 -1.11 -9.51 16 7 C 0.12 2.12 5.11 -4.97 -0.03 2.09 16 8 C -0.21 -4.34 4.91 -104.33 -0.51 -4.85 16 9 C -0.09 -2.10 7.89 -39.66 -0.31 -2.41 16 10 C -0.17 -4.21 8.70 -38.87 -0.34 -4.54 16 11 C 0.11 2.97 5.57 -106.83 -0.60 2.37 16 12 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 13 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.39 10.97 55.55 0.61 -19.78 16 16 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 21 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 22 C 0.07 0.91 4.87 -3.77 -0.02 0.89 16 23 C 0.18 2.23 2.47 -68.80 -0.17 2.06 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 C 0.22 2.58 6.23 -155.42 -0.97 1.62 16 26 N -0.46 -6.14 9.54 -10.82 -0.10 -6.25 16 27 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 28 C -0.06 -0.49 12.04 -16.56 -0.20 -0.69 16 29 N -0.57 -5.00 6.15 -10.23 -0.06 -5.06 16 30 H 0.42 2.53 8.96 -40.82 -0.37 2.16 16 31 H 0.06 0.59 6.26 -51.93 -0.33 0.27 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.13 6.36 -51.93 -0.33 0.80 16 35 H 0.02 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.09 5.99 -51.92 -0.31 0.78 16 38 H 0.10 1.69 5.96 -51.93 -0.31 1.38 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 41 H 0.03 0.46 8.06 -51.93 -0.42 0.05 16 42 H 0.08 1.74 8.00 -52.49 -0.42 1.32 16 43 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 44 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 45 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 46 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 50 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -29.19 392.01 -12.92 -42.11 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.83 Total: 8.59 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -4.26 Total: -21.69 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -1.70 Total: -48.44 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.19 -12.92 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348366772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.319 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds