Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46949 * 2 1 4 4 C 1.46952 * 111.00362 * 46.19949 * 3 2 1 5 5 C 1.53046 * 109.36756 * 183.18773 * 4 3 2 6 6 N 1.46952 * 109.36419 * 301.59793 * 5 4 3 7 7 C 1.46902 * 110.99890 * 183.18843 * 6 5 4 8 8 C 1.50702 * 109.47254 * 66.19806 * 7 6 5 9 9 C 1.38634 * 119.74893 * 269.72624 * 8 7 6 10 10 C 1.37620 * 120.24422 * 179.72225 * 9 8 7 11 11 C 1.40714 * 119.74491 * 0.52778 * 10 9 8 12 12 C 1.41401 * 120.24011 * 179.72632 * 11 10 9 13 13 H 1.08001 * 119.99645 * 155.30822 * 12 11 10 14 14 C 1.39939 * 120.00165 * 335.30964 * 12 11 10 15 15 N 1.30823 * 120.00042 * 342.23562 * 14 12 11 16 16 Si 1.86807 * 119.99920 * 162.23367 * 14 12 11 17 17 H 1.48498 * 109.46890 * 94.66575 * 16 14 12 18 18 H 1.48497 * 109.47056 * 214.66295 * 16 14 12 19 19 H 1.48495 * 109.46994 * 334.66512 * 16 14 12 20 20 C 1.40709 * 119.51383 * 359.74430 * 11 10 9 21 21 C 1.37621 * 119.74655 * 0.02562 * 20 11 10 22 22 C 1.46954 * 110.88371 * 59.31866 * 6 5 4 23 23 C 1.46960 * 110.99721 * 169.99588 * 3 2 1 24 24 H 1.08994 * 109.50796 * 296.78926 * 23 3 2 25 25 C 1.50704 * 109.49134 * 56.84611 * 23 3 2 26 26 N 1.30500 * 125.64804 * 24.90905 * 25 23 3 27 27 C 1.34130 * 109.25518 * 179.97438 * 26 25 23 28 28 C 1.34668 * 108.01683 * 0.02562 * 27 26 25 29 29 N 1.35038 * 125.64945 * 204.89044 * 25 23 3 30 30 H 0.97000 * 126.39949 * 0.05120 * 29 25 23 31 31 H 1.08996 * 109.47818 * 300.00338 * 1 2 3 32 32 H 1.09006 * 109.46804 * 60.00508 * 1 2 3 33 33 H 1.08998 * 109.46836 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47818 * 239.99662 * 2 1 3 35 35 H 1.09006 * 109.46804 * 119.99492 * 2 1 3 36 36 H 1.09002 * 109.48938 * 63.21411 * 4 3 2 37 37 H 1.09010 * 109.48672 * 303.15625 * 4 3 2 38 38 H 1.09006 * 109.49001 * 181.62549 * 5 4 3 39 39 H 1.09005 * 109.50876 * 61.57807 * 5 4 3 40 40 H 1.09005 * 109.46929 * 186.19961 * 7 6 5 41 41 H 1.08997 * 109.46963 * 306.19583 * 7 6 5 42 42 H 1.07997 * 119.87511 * 359.97438 * 9 8 7 43 43 H 1.08001 * 120.12456 * 180.27817 * 10 9 8 44 44 H 0.96998 * 119.99981 * 180.02562 * 15 14 12 45 45 H 1.07998 * 120.12888 * 179.97438 * 20 11 10 46 46 H 1.07990 * 119.87704 * 179.97438 * 21 20 11 47 47 H 1.08994 * 109.48827 * 180.71144 * 22 6 5 48 48 H 1.08999 * 109.50582 * 60.65743 * 22 6 5 49 49 H 1.08000 * 125.98910 * 179.97438 * 27 26 25 50 50 H 1.08005 * 126.58776 * 179.73000 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2999 2.1981 0.9902 5 6 1.7825 3.6479 0.9036 6 7 3.2318 3.6941 1.1419 7 6 3.7214 5.0791 1.1419 8 6 3.1436 5.8162 2.3225 9 6 1.9397 6.4908 2.1902 10 6 1.3999 7.1625 3.2633 11 6 2.0803 7.1721 4.4949 12 6 1.5381 7.8637 5.6027 13 1 1.8055 7.5691 6.6067 14 6 0.6551 8.9299 5.3980 15 7 0.5938 9.5132 4.2286 16 14 -0.4361 9.5202 6.7946 17 1 0.2225 10.6537 7.4920 18 1 -1.7421 9.9673 6.2472 19 1 -0.6560 8.4088 7.7545 20 6 3.3044 6.4887 4.6160 21 6 3.8231 5.8196 3.5310 22 6 3.9516 2.8810 0.1518 23 6 3.4690 1.4312 0.2383 24 1 3.6877 1.0336 1.2294 25 6 4.1765 0.6028 -0.8030 26 7 3.7190 0.3246 -1.9932 27 6 4.6141 -0.4321 -2.6453 28 6 5.6658 -0.6308 -1.8281 29 7 5.3889 0.0258 -0.6594 30 1 5.9571 0.0681 0.1256 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.4936 1.8094 1.9899 37 1 0.2300 2.1580 0.7851 38 1 1.2707 4.2471 1.6568 39 1 1.5640 4.0458 -0.0874 40 1 4.8094 5.0799 1.2101 41 1 3.4149 5.5728 0.2198 42 1 1.4216 6.4858 1.2427 43 1 0.4597 7.6836 3.1592 44 1 -0.0179 10.2524 4.0868 45 1 3.8352 6.4899 5.5565 46 1 4.7625 5.2948 3.6214 47 1 5.0214 2.9211 0.3569 48 1 3.7582 3.2696 -0.8481 49 1 4.5092 -0.8156 -3.6495 50 1 6.5551 -1.2020 -2.0505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348366772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = 80.634307 kcal Electronic energy + Delta-G solvation = -29439.079518 eV Core-core repulsion = 25659.215496 eV Total energy + Delta-G solvation = -3779.864022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.02305 -40.55617 -39.31920 -37.05220 -35.44560 -33.59191 -33.28375 -32.35588 -31.34843 -30.98161 -29.41218 -28.70658 -26.67328 -25.11427 -24.55178 -22.85574 -22.47792 -22.39632 -21.93724 -21.33439 -20.50543 -19.18782 -18.94825 -17.18392 -17.16485 -16.63152 -16.22564 -16.11327 -15.83981 -15.72208 -15.59348 -15.32618 -15.15916 -15.01133 -14.64153 -14.46696 -14.26923 -14.03088 -13.80622 -13.63672 -13.36550 -13.17041 -12.87252 -12.78640 -12.68357 -12.48150 -12.37481 -12.31872 -12.17657 -12.07830 -11.83445 -11.61075 -11.33791 -11.21699 -10.96642 -10.91303 -10.81067 -9.41636 -9.31979 -9.29692 -9.22775 -9.09079 -8.61695 -6.30147 0.96009 1.12849 1.20191 1.38267 1.48770 1.54389 2.11555 2.20331 2.21701 2.68018 2.90348 3.08529 3.52349 3.78906 3.85338 4.00608 4.04279 4.16868 4.21737 4.31292 4.32215 4.40662 4.41712 4.53153 4.56036 4.57770 4.61935 4.65907 4.69492 4.74143 4.80513 4.83579 4.90345 5.02373 5.07050 5.08661 5.17124 5.19246 5.22782 5.30461 5.40757 5.51375 5.74672 5.85030 5.94810 5.97174 6.05162 6.12570 6.14780 6.22247 6.32985 6.43530 6.52743 6.74282 6.97905 7.08065 7.24685 8.35286 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.002335 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.247007 B =11987.004357 C =12728.656754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 N -0.525 5.525 4 C 0.063 3.937 5 C 0.059 3.941 6 N -0.534 5.534 7 C 0.127 3.873 8 C -0.191 4.191 9 C -0.093 4.093 10 C -0.188 4.188 11 C 0.080 3.920 12 C -0.502 4.502 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.979 3.021 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.244 4.244 21 C -0.070 4.070 22 C 0.073 3.927 23 C 0.182 3.818 24 H 0.064 0.936 25 C 0.197 3.803 26 N -0.496 5.496 27 C -0.065 4.065 28 C -0.034 4.034 29 N -0.556 5.556 30 H 0.432 0.568 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.037 0.963 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.287 0.713 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.030 0.970 49 H 0.181 0.819 50 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -19.264 -9.706 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 N -0.251 5.251 4 C -0.065 4.065 5 C -0.069 4.069 6 N -0.259 5.259 7 C 0.000 4.000 8 C -0.193 4.193 9 C -0.112 4.112 10 C -0.208 4.208 11 C 0.078 3.922 12 C -0.532 4.532 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.264 4.264 21 C -0.088 4.088 22 C -0.056 4.056 23 C 0.071 3.929 24 H 0.082 0.918 25 C -0.068 4.068 26 N -0.216 5.216 27 C -0.213 4.213 28 C -0.169 4.169 29 N -0.161 5.161 30 H 0.272 0.728 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.048 0.952 49 H 0.199 0.801 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.916 -18.827 -10.203 22.216 hybrid contribution 0.474 0.470 1.137 1.318 sum 6.389 -18.356 -9.067 21.447 Atomic orbital electron populations 1.21879 0.93993 1.02546 1.02264 1.22090 0.96460 0.88010 1.00389 1.62001 1.01841 1.11976 1.49285 1.22233 0.99185 0.91949 0.93141 1.22141 0.88631 0.96677 0.99435 1.62219 1.04133 1.11194 1.48314 1.20635 0.99052 0.86203 0.94069 1.19182 0.98165 1.06242 0.95701 1.20701 0.95912 0.97631 0.96920 1.21218 1.00928 1.04211 0.94447 1.17948 0.90625 0.90272 0.93376 1.19816 1.25107 1.14051 0.94206 0.90918 1.26727 0.96796 0.95170 0.99237 1.69882 1.31625 1.18177 1.25608 0.85247 0.77680 0.78930 0.78179 1.18757 1.19079 1.18333 1.21158 0.97729 1.08672 0.98796 1.20607 0.98592 0.97312 0.92333 1.22074 0.98533 0.91307 0.93660 1.19708 0.87810 0.92899 0.92498 0.91807 1.22713 0.86515 1.02065 0.95524 1.70260 1.30934 1.16093 1.04264 1.22863 0.92589 1.03730 1.02106 1.23332 1.03542 1.03598 0.86418 1.43264 1.16843 1.39824 1.16136 0.72773 0.92203 0.92320 0.90962 0.90491 0.95688 0.94488 0.88470 0.90911 0.95137 0.89874 0.95479 0.88463 0.88532 0.90269 0.88808 0.86716 0.89186 0.95188 0.80141 0.76845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.17 71.98 0.66 -2.24 16 2 C 0.06 1.31 5.37 86.30 0.46 1.77 16 3 N -0.53 -13.39 4.54 -874.87 -3.97 -17.36 16 4 C 0.06 1.66 4.93 86.31 0.43 2.09 16 5 C 0.06 1.84 5.26 86.31 0.45 2.29 16 6 N -0.53 -16.09 4.70 -900.28 -4.23 -20.32 16 7 C 0.13 4.18 5.11 85.56 0.44 4.62 16 8 C -0.19 -7.88 4.91 -19.67 -0.10 -7.97 16 9 C -0.09 -4.24 7.89 22.22 0.18 -4.07 16 10 C -0.19 -9.98 8.70 22.73 0.20 -9.78 16 11 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 12 C -0.50 -27.55 9.05 23.46 0.21 -27.34 16 13 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 14 C 0.04 1.80 5.14 85.26 0.44 2.24 16 15 N -0.83 -43.95 10.97 21.82 0.24 -43.71 16 16 Si 0.98 38.79 29.60 68.60 2.03 40.82 16 17 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 C -0.24 -12.03 9.80 22.73 0.22 -11.81 16 21 C -0.07 -3.00 9.67 22.22 0.21 -2.78 16 22 C 0.07 1.87 4.87 86.31 0.42 2.29 16 23 C 0.18 4.30 2.47 44.18 0.11 4.41 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 C 0.20 4.33 6.23 138.13 0.86 5.19 16 26 N -0.50 -12.62 9.54 -188.13 -1.80 -14.41 16 27 C -0.07 -1.24 11.87 83.52 0.99 -0.24 16 28 C -0.03 -0.45 12.04 83.09 1.00 0.55 16 29 N -0.56 -8.20 6.15 -186.27 -1.15 -9.34 16 30 H 0.43 3.79 8.96 -92.71 -0.83 2.96 16 31 H 0.06 1.14 6.26 -2.39 -0.01 1.13 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.94 6.36 -2.39 -0.02 1.92 16 35 H 0.02 0.55 8.08 -2.38 -0.02 0.53 16 36 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.10 2.37 5.99 -2.38 -0.01 2.35 16 38 H 0.07 2.59 5.96 -2.38 -0.01 2.58 16 39 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 41 H 0.03 0.90 8.06 -2.39 -0.02 0.88 16 42 H 0.10 4.09 8.00 -2.91 -0.02 4.07 16 43 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 44 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 45 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 46 H 0.11 4.21 8.06 -2.92 -0.02 4.19 16 47 H 0.09 1.96 8.07 -2.39 -0.02 1.94 16 48 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 50 H 0.21 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -65.47 392.01 -1.69 -67.17 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.11 Total: 33.69 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 7.07 Total: -36.52 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -10.90 Total: -105.15 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -65.47 -1.69 -67.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348366772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.802 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds