Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46328 * 2 1 4 4 C 1.53028 * 109.46448 * 119.98732 * 2 1 3 5 5 C 1.53095 * 109.29318 * 179.19361 * 4 2 1 6 6 C 1.53117 * 109.15236 * 302.33572 * 5 4 2 7 7 C 1.53039 * 109.27858 * 57.65375 * 6 5 4 8 8 N 1.46845 * 109.52348 * 300.82133 * 7 6 5 9 9 C 1.46902 * 111.00090 * 185.83772 * 8 7 6 10 10 C 1.53004 * 109.46949 * 323.21118 * 9 8 7 11 11 H 1.09001 * 109.50063 * 54.32789 * 10 9 8 12 12 C 1.53042 * 109.49667 * 174.42327 * 10 9 8 13 13 C 1.53040 * 109.53810 * 181.31464 * 12 10 9 14 14 C 1.53184 * 109.31366 * 298.63459 * 13 12 10 15 15 N 1.46933 * 108.77563 * 54.63301 * 14 13 12 16 16 C 1.34776 * 120.63044 * 126.40849 * 15 14 13 17 17 O 1.21284 * 120.00315 * 179.97438 * 16 15 14 18 18 C 1.50710 * 119.99986 * 359.97438 * 16 15 14 19 19 S 1.80996 * 109.47151 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99960 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00102 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47335 * 89.99913 * 24 22 20 26 26 H 1.48502 * 109.46883 * 209.99552 * 24 22 20 27 27 H 1.48496 * 109.47332 * 329.99890 * 24 22 20 28 28 C 1.46923 * 118.73959 * 306.39610 * 15 14 13 29 29 H 1.08999 * 109.47610 * 171.84676 * 1 2 3 30 30 H 1.09002 * 109.46569 * 291.85011 * 1 2 3 31 31 H 1.09010 * 109.47169 * 51.84348 * 1 2 3 32 32 H 1.09003 * 109.49977 * 299.12424 * 4 2 1 33 33 H 1.09004 * 109.50611 * 59.23543 * 4 2 1 34 34 H 1.09003 * 109.52643 * 182.43431 * 5 4 2 35 35 H 1.08997 * 109.58039 * 62.26754 * 5 4 2 36 36 H 1.09000 * 109.50984 * 297.71584 * 6 5 4 37 37 H 1.09002 * 109.50746 * 177.59475 * 6 5 4 38 38 H 1.09002 * 109.46611 * 180.79985 * 7 6 5 39 39 H 1.09001 * 109.45162 * 60.83101 * 7 6 5 40 40 H 1.09001 * 109.46876 * 83.20701 * 9 8 7 41 41 H 1.09002 * 109.47417 * 203.20833 * 9 8 7 42 42 H 1.08998 * 109.45999 * 301.33664 * 12 10 9 43 43 H 1.09000 * 109.46095 * 61.29213 * 12 10 9 44 44 H 1.09004 * 109.49589 * 178.68201 * 13 12 10 45 45 H 1.09000 * 109.49390 * 58.58736 * 13 12 10 46 46 H 1.09001 * 109.59092 * 294.84847 * 14 13 12 47 47 H 1.09001 * 109.70536 * 174.49246 * 14 13 12 48 48 H 1.08996 * 109.46655 * 299.99402 * 18 16 15 49 49 H 1.08998 * 109.46892 * 59.99113 * 18 16 15 50 50 H 0.97003 * 119.99719 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.58271 * 293.81550 * 28 15 14 52 52 H 1.08996 * 109.70455 * 173.46566 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2497 5 6 3.5708 -0.7365 1.2356 6 6 4.0545 -1.4192 -0.0467 7 6 3.4864 -0.6780 -1.2591 8 7 2.0192 -0.6917 -1.1994 9 6 1.4374 -0.1103 -2.4166 10 6 2.3038 1.0596 -2.8875 11 1 3.3345 0.7249 -3.0046 12 6 1.7785 1.5768 -4.2286 13 6 2.6641 2.7257 -4.7164 14 6 2.6112 3.8721 -3.7019 15 7 2.9758 3.3493 -2.3780 16 6 3.9602 3.9250 -1.6596 17 8 4.2515 3.4844 -0.5679 18 6 4.6989 5.1164 -2.2129 19 16 5.9503 5.6567 -1.0221 20 6 6.6403 7.0194 -1.9004 21 1 6.2595 7.2813 -2.8765 22 6 7.6727 7.7569 -1.3375 23 7 8.1358 7.4386 -0.1472 24 14 8.4037 9.2020 -2.2684 25 1 7.6621 10.4408 -1.9211 26 1 9.8324 9.3594 -1.8953 27 1 8.2978 8.9547 -3.7288 28 6 2.2468 2.1871 -1.8521 29 1 -0.3634 -1.0172 -0.1457 30 1 -0.3632 0.3825 0.9539 31 1 -0.3634 0.6350 -0.8082 32 1 1.6897 -0.1984 2.1398 33 1 1.6657 -1.7449 1.2573 34 1 3.9376 -1.2869 2.1020 35 1 3.9466 0.2861 1.2678 36 1 3.7120 -2.4540 -0.0597 37 1 5.1437 -1.3954 -0.0832 38 1 3.8174 -1.1701 -2.1736 39 1 3.8405 0.3529 -1.2529 40 1 1.3960 -0.8693 -3.1978 41 1 0.4298 0.2466 -2.2030 42 1 1.7949 0.7695 -4.9608 43 1 0.7560 1.9338 -4.1049 44 1 2.3033 3.0781 -5.6828 45 1 3.6915 2.3757 -4.8167 46 1 1.6023 4.2832 -3.6671 47 1 3.3140 4.6530 -3.9926 48 1 5.1833 4.8406 -3.1495 49 1 3.9948 5.9287 -2.3935 50 1 8.8570 7.9542 0.2464 51 1 1.2081 2.4608 -1.6666 52 1 2.7084 1.8535 -0.9228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369324849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -38.576421 kcal Electronic energy + Delta-G solvation = -29190.953159 eV Core-core repulsion = 25509.070972 eV Total energy + Delta-G solvation = -3681.882187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.73007 -39.17981 -37.17052 -34.51637 -32.91475 -32.44519 -32.34035 -31.00944 -29.21268 -27.32643 -26.21441 -25.56893 -25.10925 -23.69812 -22.11924 -21.33837 -20.69143 -19.48636 -18.86371 -17.62935 -16.72088 -16.21656 -15.86419 -15.62054 -15.21355 -14.81987 -14.78248 -14.59900 -14.46912 -14.26149 -13.97709 -13.68187 -13.51237 -13.21797 -13.04467 -12.76433 -12.60493 -12.49832 -12.16093 -12.05067 -12.02216 -11.90464 -11.73083 -11.35099 -11.14303 -11.08438 -11.05481 -11.01362 -10.92480 -10.76717 -10.64819 -10.47782 -10.33925 -10.22747 -9.81258 -9.37603 -9.07823 -8.53289 -8.24317 -8.23690 -6.51313 -6.22797 -3.93419 2.92140 3.03863 3.21171 3.24970 3.29224 3.58189 3.77173 4.19014 4.43735 4.52890 4.60582 4.69516 4.75488 4.80994 4.86948 4.98225 5.00976 5.09819 5.12362 5.17161 5.25364 5.27012 5.31973 5.41364 5.45557 5.46738 5.53090 5.56936 5.57690 5.64578 5.70357 5.71805 5.73951 5.79219 5.82533 5.84565 5.88103 5.91167 5.96298 6.00381 6.05014 6.08687 6.10002 6.15527 6.18920 6.39424 6.63678 6.99803 7.03849 7.55547 7.58532 8.33863 8.54911 9.22464 10.84600 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.002943 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.556908 B = 9510.766873 C =10673.349377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.126 4.126 6 C -0.115 4.115 7 C 0.048 3.952 8 N -0.528 5.528 9 C 0.053 3.947 10 C -0.141 4.141 11 H 0.083 0.917 12 C -0.109 4.109 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.518 6.518 18 C -0.150 4.150 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.109 3.891 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.268 0.732 51 H 0.059 0.941 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 -16.681 -6.426 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.080 4.080 8 N -0.252 5.252 9 C -0.075 4.075 10 C -0.161 4.161 11 H 0.101 0.899 12 C -0.147 4.147 13 C -0.173 4.173 14 C -0.017 4.017 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.392 6.392 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.001 -17.780 -4.600 24.359 hybrid contribution 0.399 2.360 -2.083 3.173 sum -15.603 -15.420 -6.683 22.932 Atomic orbital electron populations 1.21949 0.94661 1.02290 1.01603 1.21995 0.95108 0.96962 0.90562 0.92360 1.21586 0.95680 1.00921 0.96413 1.21603 0.95650 1.01475 0.97633 1.21561 0.99853 0.99680 0.94168 1.22211 0.87250 0.99917 0.98600 1.62242 1.07400 1.53954 1.01612 1.22406 0.98307 0.94439 0.92373 1.22330 1.01817 0.96051 0.95926 0.89905 1.21485 0.99148 0.97934 0.96165 1.21915 1.00981 0.96049 0.98400 1.21721 1.01260 0.96471 0.82217 1.48122 1.36765 1.31776 1.18844 1.20347 0.78667 0.83995 0.84752 1.90682 1.64733 1.63473 1.20325 1.23550 1.03190 0.97726 1.05592 1.85390 1.37497 1.38029 1.22440 1.22857 1.22769 1.16481 1.06264 0.90985 1.24989 0.95744 0.97697 0.95118 1.70020 1.26097 1.39216 1.14911 0.86173 0.78274 0.81401 0.79688 1.20260 1.20735 1.19694 1.21991 0.96244 0.85244 0.97825 0.91791 0.92130 0.92621 0.91745 0.91468 0.91957 0.91522 0.91556 0.91607 0.91058 0.93351 0.90509 0.90168 0.91632 0.91857 0.90708 0.91360 0.91665 0.89257 0.89358 0.89365 0.92183 0.92290 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.65 37.16 0.32 -0.93 16 2 C 0.06 0.63 2.04 -67.73 -0.14 0.50 16 3 H 0.06 0.73 4.51 -51.93 -0.23 0.49 16 4 C -0.11 -1.09 5.36 -26.67 -0.14 -1.24 16 5 C -0.13 -1.40 6.00 -26.62 -0.16 -1.56 16 6 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 7 C 0.05 0.53 4.05 -3.83 -0.02 0.52 16 8 N -0.53 -5.33 4.69 -226.69 -1.06 -6.39 16 9 C 0.05 0.47 5.08 -3.82 -0.02 0.45 16 10 C -0.14 -1.39 1.81 -90.50 -0.16 -1.56 16 11 H 0.08 0.96 6.05 -51.93 -0.31 0.64 16 12 C -0.11 -0.90 5.17 -26.69 -0.14 -1.03 16 13 C -0.14 -1.22 6.08 -26.62 -0.16 -1.39 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.62 -8.96 2.97 -172.77 -0.51 -9.48 16 16 C 0.53 10.30 7.72 -10.98 -0.08 10.21 16 17 O -0.52 -11.82 15.28 5.55 0.08 -11.74 16 18 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.11 1.37 4.20 -3.72 -0.02 1.36 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.05 0.44 6.27 -51.92 -0.33 0.12 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 39 H 0.05 0.66 5.20 -51.93 -0.27 0.39 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.65 5.26 -51.93 -0.27 0.38 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 48 H 0.09 1.69 7.70 -51.92 -0.40 1.29 16 49 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 50 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 1.51 3.03 -51.93 -0.16 1.35 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -32.84 393.73 -11.60 -44.44 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.99 Total: 0.94 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.54 Total: -10.78 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.84 Total: -41.30 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.84 -11.60 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369324849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.860 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds