Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46328 * 2 1 4 4 C 1.53028 * 109.46448 * 119.98732 * 2 1 3 5 5 C 1.53095 * 109.29318 * 179.19361 * 4 2 1 6 6 C 1.53117 * 109.15236 * 302.33572 * 5 4 2 7 7 C 1.53039 * 109.27858 * 57.65375 * 6 5 4 8 8 N 1.46845 * 109.52348 * 300.82133 * 7 6 5 9 9 C 1.46902 * 111.00090 * 185.83772 * 8 7 6 10 10 C 1.53004 * 109.46949 * 323.21118 * 9 8 7 11 11 H 1.09001 * 109.50063 * 54.32789 * 10 9 8 12 12 C 1.53042 * 109.49667 * 174.42327 * 10 9 8 13 13 C 1.53040 * 109.53810 * 181.31464 * 12 10 9 14 14 C 1.53184 * 109.31366 * 298.63459 * 13 12 10 15 15 N 1.46933 * 108.77563 * 54.63301 * 14 13 12 16 16 C 1.34776 * 120.63044 * 126.40849 * 15 14 13 17 17 O 1.21284 * 120.00315 * 179.97438 * 16 15 14 18 18 C 1.50710 * 119.99986 * 359.97438 * 16 15 14 19 19 S 1.80996 * 109.47151 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99960 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00102 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47335 * 89.99913 * 24 22 20 26 26 H 1.48502 * 109.46883 * 209.99552 * 24 22 20 27 27 H 1.48496 * 109.47332 * 329.99890 * 24 22 20 28 28 C 1.46923 * 118.73959 * 306.39610 * 15 14 13 29 29 H 1.08999 * 109.47610 * 171.84676 * 1 2 3 30 30 H 1.09002 * 109.46569 * 291.85011 * 1 2 3 31 31 H 1.09010 * 109.47169 * 51.84348 * 1 2 3 32 32 H 1.09003 * 109.49977 * 299.12424 * 4 2 1 33 33 H 1.09004 * 109.50611 * 59.23543 * 4 2 1 34 34 H 1.09003 * 109.52643 * 182.43431 * 5 4 2 35 35 H 1.08997 * 109.58039 * 62.26754 * 5 4 2 36 36 H 1.09000 * 109.50984 * 297.71584 * 6 5 4 37 37 H 1.09002 * 109.50746 * 177.59475 * 6 5 4 38 38 H 1.09002 * 109.46611 * 180.79985 * 7 6 5 39 39 H 1.09001 * 109.45162 * 60.83101 * 7 6 5 40 40 H 1.09001 * 109.46876 * 83.20701 * 9 8 7 41 41 H 1.09002 * 109.47417 * 203.20833 * 9 8 7 42 42 H 1.08998 * 109.45999 * 301.33664 * 12 10 9 43 43 H 1.09000 * 109.46095 * 61.29213 * 12 10 9 44 44 H 1.09004 * 109.49589 * 178.68201 * 13 12 10 45 45 H 1.09000 * 109.49390 * 58.58736 * 13 12 10 46 46 H 1.09001 * 109.59092 * 294.84847 * 14 13 12 47 47 H 1.09001 * 109.70536 * 174.49246 * 14 13 12 48 48 H 1.08996 * 109.46655 * 299.99402 * 18 16 15 49 49 H 1.08998 * 109.46892 * 59.99113 * 18 16 15 50 50 H 0.97003 * 119.99719 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.58271 * 293.81550 * 28 15 14 52 52 H 1.08996 * 109.70455 * 173.46566 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2497 5 6 3.5708 -0.7365 1.2356 6 6 4.0545 -1.4192 -0.0467 7 6 3.4864 -0.6780 -1.2591 8 7 2.0192 -0.6917 -1.1994 9 6 1.4374 -0.1103 -2.4166 10 6 2.3038 1.0596 -2.8875 11 1 3.3345 0.7249 -3.0046 12 6 1.7785 1.5768 -4.2286 13 6 2.6641 2.7257 -4.7164 14 6 2.6112 3.8721 -3.7019 15 7 2.9758 3.3493 -2.3780 16 6 3.9602 3.9250 -1.6596 17 8 4.2515 3.4844 -0.5679 18 6 4.6989 5.1164 -2.2129 19 16 5.9503 5.6567 -1.0221 20 6 6.6403 7.0194 -1.9004 21 1 6.2595 7.2813 -2.8765 22 6 7.6727 7.7569 -1.3375 23 7 8.1358 7.4386 -0.1472 24 14 8.4037 9.2020 -2.2684 25 1 7.6621 10.4408 -1.9211 26 1 9.8324 9.3594 -1.8953 27 1 8.2978 8.9547 -3.7288 28 6 2.2468 2.1871 -1.8521 29 1 -0.3634 -1.0172 -0.1457 30 1 -0.3632 0.3825 0.9539 31 1 -0.3634 0.6350 -0.8082 32 1 1.6897 -0.1984 2.1398 33 1 1.6657 -1.7449 1.2573 34 1 3.9376 -1.2869 2.1020 35 1 3.9466 0.2861 1.2678 36 1 3.7120 -2.4540 -0.0597 37 1 5.1437 -1.3954 -0.0832 38 1 3.8174 -1.1701 -2.1736 39 1 3.8405 0.3529 -1.2529 40 1 1.3960 -0.8693 -3.1978 41 1 0.4298 0.2466 -2.2030 42 1 1.7949 0.7695 -4.9608 43 1 0.7560 1.9338 -4.1049 44 1 2.3033 3.0781 -5.6828 45 1 3.6915 2.3757 -4.8167 46 1 1.6023 4.2832 -3.6671 47 1 3.3140 4.6530 -3.9926 48 1 5.1833 4.8406 -3.1495 49 1 3.9948 5.9287 -2.3935 50 1 8.8570 7.9542 0.2464 51 1 1.2081 2.4608 -1.6666 52 1 2.7084 1.8535 -0.9228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369324849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -58.918585 kcal Electronic energy + Delta-G solvation = -29191.835261 eV Core-core repulsion = 25509.070972 eV Total energy + Delta-G solvation = -3682.764289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.73397 -40.35151 -38.30784 -35.49915 -34.61326 -33.82314 -33.25407 -32.04960 -30.60945 -28.15554 -27.73663 -27.02242 -26.21833 -24.59056 -22.96872 -22.23129 -21.71127 -20.35599 -20.25619 -19.39266 -18.14081 -17.15908 -16.97017 -16.90021 -16.69950 -16.38667 -16.01903 -15.58930 -15.42761 -15.28169 -15.19242 -14.73260 -14.59438 -14.50861 -14.29961 -14.01568 -13.68016 -13.49799 -13.29139 -13.19846 -12.91443 -12.91084 -12.89098 -12.78578 -12.66317 -12.51820 -12.18418 -11.94901 -11.88534 -11.77047 -11.71331 -11.54452 -11.33552 -11.17962 -11.16715 -11.04162 -10.91211 -10.30142 -9.71064 -9.11391 -8.70997 -8.37112 -6.16163 1.22306 1.40739 1.43295 1.51853 1.54551 2.06380 2.24769 2.96315 2.96994 3.21381 3.55976 3.68346 3.76849 3.85809 3.90968 3.95429 3.98470 4.04340 4.14553 4.19524 4.24512 4.29497 4.39080 4.40473 4.43497 4.51206 4.58310 4.64390 4.67616 4.72134 4.80089 4.83868 4.85003 4.94293 4.96826 4.98752 5.02490 5.05826 5.09705 5.18080 5.20384 5.23255 5.24476 5.34676 5.38670 5.43589 5.48979 5.55561 6.16465 6.16892 6.22049 6.25914 7.03782 7.09478 8.72196 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.002943 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.556908 B = 9510.766873 C =10673.349377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 H 0.033 0.967 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.524 5.524 9 C 0.056 3.944 10 C -0.130 4.130 11 H 0.062 0.938 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.607 5.607 16 C 0.530 3.470 17 O -0.566 6.566 18 C -0.122 4.122 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.257 1.257 28 C 0.108 3.892 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.271 0.729 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.762 -17.071 -9.427 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.051 0.949 4 C -0.144 4.144 5 C -0.164 4.164 6 C -0.151 4.151 7 C -0.074 4.074 8 N -0.248 5.248 9 C -0.072 4.072 10 C -0.151 4.151 11 H 0.080 0.920 12 C -0.142 4.142 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.340 5.340 16 C 0.317 3.683 17 O -0.445 6.445 18 C -0.273 4.273 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.181 1.181 28 C -0.014 4.014 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.390 -18.189 -7.650 26.974 hybrid contribution 1.039 2.407 -1.166 2.870 sum -17.351 -15.782 -8.817 25.057 Atomic orbital electron populations 1.21902 0.92761 1.02984 1.02217 1.22004 0.96534 0.95544 0.90768 0.94931 1.21580 0.94576 1.01566 0.96647 1.21586 0.96780 0.99570 0.98456 1.21555 0.99589 1.00205 0.93773 1.22111 0.88195 0.98100 0.99032 1.62297 1.06442 1.53818 1.02195 1.22502 0.98401 0.94260 0.92073 1.22234 1.01200 0.95385 0.96296 0.91979 1.21498 0.99538 0.98151 0.95047 1.21907 1.00578 0.95447 0.98895 1.22085 1.02342 0.97449 0.80726 1.48154 1.34879 1.31480 1.19516 1.20168 0.79693 0.83861 0.84547 1.90669 1.66566 1.64777 1.22479 1.23350 1.01429 0.98855 1.03656 1.85588 1.40905 1.39127 1.26731 1.23186 1.23173 1.16502 1.06592 0.89962 1.26146 0.96019 1.00914 0.96025 1.70190 1.26811 1.40844 1.16904 0.84940 0.77261 0.77062 0.78636 1.19214 1.20244 1.18115 1.22140 0.96091 0.85329 0.97792 0.90987 0.91789 0.91765 0.91610 0.90296 0.91028 0.94955 0.90161 0.92185 0.90247 0.96548 0.88845 0.88778 0.89692 0.90139 0.87864 0.92933 0.89217 0.89729 0.87816 0.87631 0.91960 0.90772 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.65 71.98 0.62 -1.50 16 2 C 0.06 1.21 2.04 44.94 0.09 1.30 16 3 H 0.03 0.86 4.51 -2.39 -0.01 0.85 16 4 C -0.11 -2.15 5.36 30.64 0.16 -1.99 16 5 C -0.13 -2.98 6.00 30.67 0.18 -2.80 16 6 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 7 C 0.05 1.22 4.05 86.33 0.35 1.57 16 8 N -0.52 -10.02 4.69 -871.10 -4.09 -14.11 16 9 C 0.06 0.84 5.08 86.30 0.44 1.28 16 10 C -0.13 -2.38 1.81 -10.72 -0.02 -2.40 16 11 H 0.06 1.42 6.05 -2.39 -0.01 1.41 16 12 C -0.10 -1.33 5.17 30.62 0.16 -1.17 16 13 C -0.13 -1.95 6.08 30.67 0.19 -1.77 16 14 C 0.10 1.91 6.34 86.36 0.55 2.46 16 15 N -0.61 -17.34 2.97 -818.90 -2.43 -19.77 16 16 C 0.53 21.09 7.72 87.66 0.68 21.77 16 17 O -0.57 -27.67 15.28 -3.04 -0.05 -27.72 16 18 C -0.12 -5.09 4.50 71.24 0.32 -4.77 16 19 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 20 C -0.55 -31.65 9.50 67.95 0.65 -31.00 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 24 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 28 C 0.11 2.68 4.20 86.36 0.36 3.04 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.06 0.85 6.27 -2.38 -0.01 0.83 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.64 7.92 -2.39 -0.02 1.62 16 39 H 0.02 0.48 5.20 -2.39 -0.01 0.47 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.20 5.26 -2.39 -0.01 1.18 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.78 5.93 -2.39 -0.01 1.76 16 48 H 0.10 3.97 7.70 -2.40 -0.02 3.95 16 49 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 50 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 52 H 0.07 2.34 3.03 -2.39 -0.01 2.33 16 Total: -1.00 -75.93 393.73 0.86 -75.07 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.89 Total: 23.72 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 5.38 Total: -17.03 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -6.24 Total: -90.14 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -75.93 0.86 -75.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369324849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.149 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds