Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00070 * 2 1 4 4 C 1.46892 * 111.00308 * 123.95582 * 2 1 3 5 5 C 1.53001 * 109.47430 * 66.04385 * 4 2 1 6 6 C 1.52994 * 109.47760 * 180.02562 * 5 4 2 7 7 N 1.46488 * 109.47468 * 179.97438 * 6 5 4 8 8 C 1.46505 * 120.00216 * 270.00034 * 7 6 5 9 9 C 1.50703 * 109.46800 * 270.00124 * 8 7 6 10 10 H 1.07994 * 120.00382 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99840 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00025 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99724 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47044 * 90.00530 * 13 11 9 15 15 H 1.48503 * 109.46668 * 210.00494 * 13 11 9 16 16 H 1.48500 * 109.47041 * 330.00242 * 13 11 9 17 17 C 1.34785 * 120.00254 * 89.99884 * 7 6 5 18 18 O 1.21277 * 119.99408 * 0.02562 * 17 7 6 19 19 C 1.50693 * 120.00086 * 180.02562 * 17 7 6 20 20 H 1.09001 * 115.55360 * 304.15754 * 19 17 7 21 21 C 1.52983 * 117.49503 * 158.46574 * 19 17 7 22 22 C 1.53102 * 60.03989 * 252.50350 * 21 19 17 23 23 C 1.52932 * 117.38373 * 252.73004 * 22 21 19 24 24 C 1.53076 * 109.67456 * 279.50824 * 23 22 21 25 25 S 1.81628 * 109.05329 * 299.80853 * 24 23 22 26 26 C 1.81628 * 102.50633 * 55.77548 * 25 24 23 27 27 C 1.52939 * 117.36441 * 107.26446 * 22 21 19 28 28 H 1.08996 * 109.47066 * 296.04897 * 1 2 3 29 29 H 1.09005 * 109.47302 * 56.04310 * 1 2 3 30 30 H 1.09000 * 109.47431 * 176.04426 * 1 2 3 31 31 H 1.09004 * 109.47140 * 183.95433 * 3 2 1 32 32 H 1.09007 * 109.47463 * 303.95456 * 3 2 1 33 33 H 1.08998 * 109.47071 * 63.95632 * 3 2 1 34 34 H 1.09003 * 109.47167 * 306.04322 * 4 2 1 35 35 H 1.09000 * 109.47401 * 186.04580 * 4 2 1 36 36 H 1.09003 * 109.46998 * 59.99833 * 5 4 2 37 37 H 1.09006 * 109.46556 * 300.00432 * 5 4 2 38 38 H 1.09003 * 109.47278 * 59.99666 * 6 5 4 39 39 H 1.09000 * 109.46960 * 300.00127 * 6 5 4 40 40 H 1.08999 * 109.46833 * 29.99702 * 8 7 6 41 41 H 1.09002 * 109.47058 * 150.00072 * 8 7 6 42 42 H 0.96998 * 119.99480 * 179.97438 * 12 11 9 43 43 H 1.09003 * 117.49246 * 145.00451 * 21 19 17 44 44 H 1.08994 * 117.49404 * 0.02562 * 21 19 17 45 45 H 1.08998 * 109.43521 * 159.44806 * 23 22 21 46 46 H 1.08996 * 109.40499 * 39.54934 * 23 22 21 47 47 H 1.09000 * 109.54013 * 59.67996 * 24 23 22 48 48 H 1.09001 * 109.54401 * 179.97438 * 24 23 22 49 49 H 1.09001 * 109.53917 * 184.36344 * 26 25 24 50 50 H 1.08998 * 109.54415 * 64.10627 * 26 25 24 51 51 H 1.08995 * 109.43228 * 200.56957 * 27 22 21 52 52 H 1.09005 * 109.43188 * 320.43368 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1793 -3.0404 2.1553 7 7 1.8302 -4.4541 1.9955 8 6 0.5732 -4.9652 2.5477 9 6 0.8016 -5.4414 3.9592 10 1 1.7847 -5.3708 4.4006 11 6 -0.2445 -5.9683 4.6867 12 7 -0.0452 -6.3843 5.9183 13 14 -1.9449 -6.0911 3.9230 14 1 -2.0868 -7.4015 3.2391 15 1 -2.9747 -5.9735 4.9864 16 1 -2.1247 -4.9958 2.9365 17 6 2.6655 -5.2846 1.3403 18 8 3.7062 -4.8615 0.8836 19 6 2.3061 -6.7387 1.1754 20 1 2.1003 -7.2798 2.0990 21 6 2.9838 -7.5095 0.0409 22 6 1.5040 -7.1322 -0.0683 23 6 0.4783 -8.2561 0.0853 24 6 0.3535 -9.0236 -1.2332 25 16 -0.1931 -7.8810 -2.5349 26 6 1.0689 -6.5764 -2.4685 27 6 1.1335 -6.0157 -1.0457 28 1 -0.3633 0.4513 0.9232 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3872 2.0627 35 1 3.0797 -0.6611 1.1755 36 1 2.0658 -2.6214 0.0450 37 1 0.5471 -2.3474 0.9323 38 1 1.7446 -2.6615 3.0804 39 1 3.2635 -2.9355 2.1937 40 1 -0.1729 -4.1707 2.5486 41 1 0.2191 -5.7957 1.9369 42 1 -0.7812 -6.7545 6.4302 43 1 3.2240 -8.5578 0.2181 44 1 3.6898 -6.9648 -0.5859 45 1 -0.4894 -7.8303 0.3502 46 1 0.8025 -8.9372 0.8721 47 1 1.3215 -9.4464 -1.5021 48 1 -0.3776 -9.8243 -1.1212 49 1 0.8056 -5.7787 -3.1631 50 1 2.0387 -6.9931 -2.7405 51 1 0.1618 -5.6034 -0.7737 52 1 1.8864 -5.2288 -0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448801713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -18.246391 kcal Electronic energy + Delta-G solvation = -29313.697256 eV Core-core repulsion = 25632.696645 eV Total energy + Delta-G solvation = -3681.000611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.07049 -38.02759 -37.36366 -35.28232 -32.93210 -32.29245 -31.68307 -31.52652 -28.04893 -27.64929 -26.39435 -24.89040 -23.86939 -23.20216 -22.65865 -21.66872 -20.67177 -19.22998 -18.00721 -17.07279 -16.65136 -16.48039 -15.85742 -15.56718 -15.28131 -15.04850 -14.76157 -14.57008 -14.19214 -13.97152 -13.85678 -13.63126 -13.41507 -13.26933 -12.79840 -12.62743 -12.48426 -12.37240 -12.22341 -12.20011 -11.96984 -11.83724 -11.68573 -11.68072 -11.34620 -11.26676 -11.23691 -10.93074 -10.73789 -10.44204 -10.34117 -10.25051 -10.08586 -9.74627 -9.67892 -9.59242 -9.09638 -8.75619 -8.41288 -7.80070 -7.67086 -6.25279 -4.26874 1.79380 2.54479 3.10976 3.13988 3.22544 3.24291 3.61840 3.94797 3.99869 4.23080 4.71088 4.74809 4.79879 4.96918 5.00192 5.02925 5.06062 5.08299 5.14562 5.21786 5.30851 5.33609 5.40118 5.44080 5.49172 5.58158 5.60535 5.65299 5.69806 5.73500 5.74850 5.81236 5.89812 5.92767 5.94482 5.97313 6.02977 6.08247 6.22423 6.36161 6.37629 6.39691 6.48089 6.53374 6.68833 6.97039 6.99292 7.31854 7.41829 8.08475 8.37336 8.78728 8.89340 9.34382 10.87329 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007032 B = 0.004959 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3980.621944 B = 5645.079036 C = 7738.619753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.583 5.583 8 C 0.211 3.789 9 C -0.540 4.540 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.891 5.891 13 Si 0.867 3.133 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.264 1.264 17 C 0.551 3.449 18 O -0.568 6.568 19 C -0.152 4.152 20 H 0.138 0.862 21 C -0.146 4.146 22 C -0.116 4.116 23 C -0.085 4.085 24 C -0.073 4.073 25 S -0.276 6.276 26 C -0.070 4.070 27 C -0.085 4.085 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.083 0.917 51 H 0.079 0.921 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 3.750 -13.736 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.003 4.003 7 N -0.312 5.312 8 C 0.090 3.910 9 C -0.579 4.579 10 H 0.095 0.905 11 C -0.126 4.126 12 N -0.528 5.528 13 Si 0.694 3.306 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.189 1.189 17 C 0.339 3.661 18 O -0.449 6.449 19 C -0.173 4.173 20 H 0.156 0.844 21 C -0.184 4.184 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.221 4.221 25 S -0.051 6.051 26 C -0.219 4.219 27 C -0.124 4.124 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.102 0.898 51 H 0.098 0.902 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.080 3.589 -14.901 15.328 hybrid contribution -0.343 0.350 1.598 1.671 sum -0.263 3.940 -13.303 13.877 Atomic orbital electron populations 1.22436 0.87483 1.02643 1.00152 1.61970 1.08029 1.13480 1.43701 1.22368 1.00760 0.88997 1.00219 1.22076 1.00177 0.93795 0.90953 1.21942 1.01330 0.93427 0.99976 1.21238 1.00800 0.80809 0.97467 1.47788 1.21914 1.07907 1.53563 1.19786 0.81415 0.94889 0.94915 1.21384 0.98291 1.41796 0.96398 0.90466 1.24857 0.98581 0.94546 0.94601 1.69892 1.32480 1.41074 1.09399 0.86979 0.84649 0.79436 0.79547 1.19657 1.20948 1.18853 1.19414 0.82934 0.86517 0.77252 1.90604 1.25343 1.77709 1.51205 1.22401 1.04659 0.94797 0.95447 0.84429 1.23084 0.93938 1.00389 1.00943 1.21546 0.93272 0.98479 0.98379 1.21312 0.99498 0.95586 0.95968 1.23349 1.04588 0.98697 0.95457 1.86667 1.41880 1.26751 1.49771 1.23325 0.99671 0.98593 1.00271 1.21297 1.03288 0.96327 0.91491 0.95652 0.91733 0.90884 0.91405 0.91611 0.95797 0.94618 0.90664 0.91079 0.91899 0.90374 0.90714 0.95170 0.94823 0.92377 0.88359 0.87997 0.89985 0.90100 0.89806 0.87883 0.87964 0.89832 0.90205 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -6.72 5.02 -251.26 -1.26 -7.98 16 3 C 0.02 0.25 9.57 60.06 0.57 0.82 16 4 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 5 C -0.13 -1.91 5.46 -26.73 -0.15 -2.06 16 6 C 0.12 2.10 5.41 -4.05 -0.02 2.08 16 7 N -0.58 -11.43 2.46 -175.07 -0.43 -11.86 16 8 C 0.21 4.51 4.05 -5.19 -0.02 4.48 16 9 C -0.54 -13.84 9.94 -34.44 -0.34 -14.18 16 10 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 13 Si 0.87 19.46 27.47 -169.99 -4.67 14.79 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 17 C 0.55 10.80 5.73 -10.99 -0.06 10.74 16 18 O -0.57 -12.16 16.02 5.56 0.09 -12.07 16 19 C -0.15 -2.63 4.09 -91.71 -0.38 -3.00 16 20 H 0.14 2.59 8.14 -51.93 -0.42 2.16 16 21 C -0.15 -2.07 9.47 -26.69 -0.25 -2.33 16 22 C -0.12 -1.66 1.42 -154.45 -0.22 -1.88 16 23 C -0.08 -1.12 5.46 -26.73 -0.15 -1.27 16 24 C -0.07 -0.82 6.47 37.20 0.24 -0.58 16 25 S -0.28 -3.48 22.25 -107.50 -2.39 -5.88 16 26 C -0.07 -0.84 6.47 37.19 0.24 -0.60 16 27 C -0.09 -1.19 5.06 -26.73 -0.14 -1.32 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.07 0.57 8.12 -51.92 -0.42 0.15 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 40 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 41 H 0.03 0.70 6.03 -51.93 -0.31 0.39 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.10 1.51 7.83 -51.93 -0.41 1.10 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 51 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.08 1.21 6.89 -51.93 -0.36 0.86 16 LS Contribution 417.23 15.07 6.29 6.29 Total: -1.00 -29.13 417.23 -11.52 -40.65 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -9.69 Total: 6.31 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.22 Total: -5.60 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.92 Total: -44.49 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.79 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.39 Total: -5.88 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -29.13 -11.52 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448801713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.400 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds