Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46677 * 2 1 4 4 C 1.52997 * 109.46999 * 240.00191 * 2 1 3 5 5 N 1.46904 * 109.47093 * 179.97438 * 4 2 1 6 6 C 1.46896 * 111.00145 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47107 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47375 * 59.99903 * 7 6 5 9 9 O 1.42900 * 109.47148 * 299.99833 * 7 6 5 10 10 C 1.53001 * 109.47196 * 180.02562 * 7 6 5 11 11 N 1.46899 * 109.47299 * 183.83298 * 10 7 6 12 12 C 1.46906 * 110.99817 * 199.93562 * 11 10 7 13 13 C 1.46898 * 111.00437 * 75.97679 * 11 10 7 14 14 C 1.50696 * 109.47452 * 190.00050 * 13 11 10 15 15 H 1.08002 * 119.99559 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00118 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99861 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00046 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47330 * 90.00196 * 18 16 14 20 20 H 1.48503 * 109.47463 * 210.00341 * 18 16 14 21 21 H 1.48499 * 109.47124 * 329.99893 * 18 16 14 22 22 O 1.42894 * 109.47175 * 120.00093 * 2 1 3 23 23 C 1.35902 * 116.99734 * 275.64774 * 22 2 1 24 24 C 1.38774 * 120.03936 * 184.61164 * 23 22 2 25 25 C 1.38141 * 119.99292 * 179.97438 * 24 23 22 26 26 C 1.38243 * 120.07865 * 359.97438 * 25 24 23 27 27 C 1.38476 * 120.08600 * 0.03692 * 26 25 24 28 28 F 1.35104 * 119.99521 * 179.97438 * 27 26 25 29 29 C 1.38384 * 120.00812 * 359.70501 * 27 26 25 30 30 H 1.09003 * 109.47143 * 299.99585 * 1 2 3 31 31 H 1.09000 * 109.46677 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47261 * 59.99807 * 1 2 3 33 33 H 1.09000 * 109.47250 * 299.99458 * 4 2 1 34 34 H 1.08998 * 109.47572 * 59.99968 * 4 2 1 35 35 H 1.00904 * 110.99787 * 56.04379 * 5 4 2 36 36 H 1.08998 * 109.47203 * 300.00439 * 6 5 4 37 37 H 1.09003 * 109.46873 * 60.00312 * 6 5 4 38 38 H 0.96696 * 114.00483 * 300.00329 * 9 7 6 39 39 H 1.08999 * 109.46848 * 303.83140 * 10 7 6 40 40 H 1.08999 * 109.47307 * 63.83052 * 10 7 6 41 41 H 1.08991 * 109.47333 * 54.67149 * 12 11 10 42 42 H 1.08999 * 109.46787 * 174.66997 * 12 11 10 43 43 H 1.08996 * 109.46668 * 294.66835 * 12 11 10 44 44 H 1.08998 * 109.46987 * 310.00267 * 13 11 10 45 45 H 1.09002 * 109.46884 * 69.99570 * 13 11 10 46 46 H 0.97005 * 119.99956 * 179.97438 * 17 16 14 47 47 H 1.08001 * 120.00669 * 359.96052 * 24 23 22 48 48 H 1.08001 * 119.95895 * 180.02562 * 25 24 23 49 49 H 1.08004 * 119.95628 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.04166 * 180.27540 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5090 -0.7207 -1.2496 6 6 4.0355 -1.4068 -2.4370 7 6 5.5649 -1.3864 -2.4016 8 1 5.9144 -1.8951 -1.5032 9 8 6.0231 -0.0329 -2.3914 10 6 6.1132 -2.1005 -3.6387 11 7 7.5788 -2.1617 -3.5594 12 6 8.1685 -2.3932 -4.8849 13 6 8.0120 -3.1896 -2.6036 14 6 9.4942 -3.0602 -2.3641 15 1 10.0579 -2.2910 -2.8710 16 6 10.1306 -3.9238 -1.4980 17 7 11.4240 -3.8106 -1.2887 18 14 9.1556 -5.2547 -0.6219 19 1 9.1459 -6.4874 -1.4499 20 1 9.7844 -5.5456 0.6916 21 1 7.7614 -4.7892 -0.4109 22 8 2.0064 -0.6736 1.1667 23 6 2.0997 0.0593 2.3074 24 6 2.6441 -0.5044 3.4527 25 6 2.7389 0.2416 4.6114 26 6 2.2925 1.5499 4.6317 27 6 1.7485 2.1155 3.4908 28 9 1.3124 3.3940 3.5129 29 6 1.6567 1.3731 2.3266 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.8710 -1.1341 -0.4032 36 1 3.6863 -2.4394 -2.4446 37 1 3.6856 -0.8983 -3.3354 38 1 5.7486 0.4811 -3.1630 39 1 5.7093 -3.1119 -3.6832 40 1 5.8203 -1.5526 -4.5342 41 1 7.8122 -1.6322 -5.5790 42 1 9.2548 -2.3399 -4.8135 43 1 7.8760 -3.3794 -5.2453 44 1 7.4790 -3.0579 -1.6620 45 1 7.7943 -4.1776 -3.0091 46 1 11.8717 -4.4180 -0.6790 47 1 2.9934 -1.5262 3.4382 48 1 3.1631 -0.1974 5.5024 49 1 2.3680 2.1315 5.5387 50 1 1.2366 1.8151 1.4352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563530341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -97.926573 kcal Electronic energy + Delta-G solvation = -29418.006557 eV Core-core repulsion = 25167.337578 eV Total energy + Delta-G solvation = -4250.668979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.20539 -40.63047 -38.41040 -37.83880 -36.08455 -35.02903 -32.58377 -32.40090 -31.01822 -29.96467 -29.74842 -28.00492 -26.67563 -24.58569 -23.77344 -22.95732 -22.77793 -21.67340 -21.09154 -19.97010 -18.99889 -17.15780 -16.91994 -16.68014 -16.53599 -16.18991 -15.98777 -15.74336 -15.46111 -15.34462 -14.80275 -14.63594 -14.44008 -14.40269 -14.12390 -13.76306 -13.51861 -13.33428 -13.06245 -12.91921 -12.62877 -12.45996 -12.36064 -12.30007 -12.03417 -11.91732 -11.61240 -11.54574 -11.37518 -11.20331 -11.09596 -11.06006 -10.72328 -10.65525 -10.09576 -9.83870 -9.56480 -9.24786 -9.18422 -8.59402 -8.55400 -8.52996 -7.34098 -6.02479 -3.99123 0.82086 0.96940 2.76001 3.28000 3.28595 3.35879 3.36942 3.76605 3.89616 4.35533 4.43242 4.44387 4.57493 4.62031 4.67873 4.70398 4.76133 4.88576 4.94797 5.09467 5.11609 5.14976 5.21648 5.27119 5.33334 5.41307 5.44905 5.51175 5.59569 5.62954 5.66454 5.70781 5.73467 5.90040 5.91323 6.01602 6.04064 6.24081 6.37199 6.38267 6.66620 6.78847 6.83539 6.97558 7.03361 7.22246 7.62104 7.89166 8.04824 8.18997 8.68798 9.07107 9.59151 11.10931 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.002435 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.361897 B =11494.416652 C =12898.525699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.678 5.678 6 C 0.027 3.973 7 C 0.118 3.882 8 H 0.098 0.902 9 O -0.529 6.529 10 C 0.023 3.977 11 N -0.521 5.521 12 C 0.039 3.961 13 C 0.162 3.838 14 C -0.505 4.505 15 H 0.081 0.919 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.268 1.268 22 O -0.303 6.303 23 C 0.169 3.831 24 C -0.163 4.163 25 C -0.051 4.051 26 C -0.196 4.196 27 C 0.137 3.863 28 F -0.138 7.138 29 C -0.247 4.247 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.351 0.649 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.362 0.638 39 H 0.030 0.970 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.010 0.990 44 H 0.028 0.972 45 H -0.019 1.019 46 H 0.263 0.737 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.135 0.865 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.112 8.264 4.999 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.025 3.975 3 H 0.104 0.896 4 C -0.065 4.065 5 N -0.310 5.310 6 C -0.103 4.103 7 C 0.057 3.943 8 H 0.115 0.885 9 O -0.332 6.332 10 C -0.107 4.107 11 N -0.245 5.245 12 C -0.109 4.109 13 C 0.036 3.964 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.193 1.193 22 O -0.216 6.216 23 C 0.123 3.877 24 C -0.182 4.182 25 C -0.069 4.069 26 C -0.215 4.215 27 C 0.118 3.882 28 F -0.117 7.117 29 C -0.267 4.267 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.170 0.830 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.207 0.793 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.029 0.971 44 H 0.045 0.955 45 H -0.001 1.001 46 H 0.073 0.927 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.153 0.847 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.441 8.910 5.511 27.513 hybrid contribution -1.367 -1.997 -0.195 2.428 sum -26.807 6.914 5.315 28.190 Atomic orbital electron populations 1.22365 0.94639 1.03588 1.03235 1.22619 0.93864 0.97799 0.83258 0.89609 1.22061 0.89437 0.99300 0.95674 1.60362 1.05460 1.59482 1.05724 1.22725 0.97123 0.96633 0.93798 1.21852 0.89187 0.84200 0.99054 0.88460 1.86698 1.77973 1.21548 1.46961 1.22744 0.91442 0.98675 0.97796 1.61853 1.04131 1.50007 1.08466 1.22239 1.01989 0.97218 0.89477 1.20236 0.97791 0.87293 0.91117 1.21024 0.90700 1.16534 1.26103 0.90087 1.24900 0.94766 0.97330 0.96399 1.69894 1.08641 1.38398 1.37048 0.86873 0.80758 0.82574 0.79575 1.20456 1.21072 1.19320 1.86122 1.80594 1.38490 1.16436 1.18676 0.93100 0.89092 0.86847 1.20583 1.04489 1.02038 0.91050 1.20832 0.95792 0.92639 0.97598 1.21058 1.05124 0.97148 0.98136 1.17401 0.97336 0.79011 0.94498 1.91508 1.87209 1.35845 1.97127 1.21209 1.10876 0.95303 0.99300 0.91585 0.91265 0.90579 0.94270 0.89155 0.82970 0.94586 0.90834 0.79325 0.95185 0.91666 0.93514 0.90195 0.97150 0.95459 1.00143 0.92698 0.84399 0.84222 0.84672 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 9.17 37.16 0.34 -0.82 16 2 C 0.08 0.68 2.50 -26.73 -0.07 0.62 16 3 H 0.09 0.76 6.29 -51.93 -0.33 0.43 16 4 C 0.06 0.57 5.42 -3.82 -0.02 0.55 16 5 N -0.68 -7.78 6.37 -113.78 -0.72 -8.51 16 6 C 0.03 0.32 5.35 -3.83 -0.02 0.29 16 7 C 0.12 1.81 3.26 -26.73 -0.09 1.72 16 8 H 0.10 1.77 6.70 -51.93 -0.35 1.42 16 9 O -0.53 -8.80 13.13 -35.23 -0.46 -9.26 16 10 C 0.02 0.38 4.64 -3.82 -0.02 0.36 16 11 N -0.52 -10.95 4.61 -244.38 -1.13 -12.08 16 12 C 0.04 0.75 9.31 60.07 0.56 1.31 16 13 C 0.16 3.98 3.61 -4.98 -0.02 3.96 16 14 C -0.51 -14.63 9.09 -34.44 -0.31 -14.94 16 15 H 0.08 2.56 7.34 -52.49 -0.39 2.17 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 18 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 22 O -0.30 -3.15 9.14 -19.43 -0.18 -3.33 16 23 C 0.17 1.75 6.59 -39.23 -0.26 1.49 16 24 C -0.16 -1.55 9.99 -39.42 -0.39 -1.94 16 25 C -0.05 -0.41 10.04 -39.62 -0.40 -0.81 16 26 C -0.20 -1.71 10.02 -39.49 -0.40 -2.11 16 27 C 0.14 1.38 7.30 -39.44 -0.29 1.10 16 28 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 29 C -0.25 -2.44 8.21 -39.37 -0.32 -2.77 16 30 H 0.07 0.44 6.92 -51.93 -0.36 0.08 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.35 4.48 8.12 -39.29 -0.32 4.16 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.36 4.61 9.04 45.56 0.41 5.02 16 39 H 0.03 0.48 8.00 -51.93 -0.42 0.06 16 40 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 41 H 0.05 0.75 7.94 -51.93 -0.41 0.33 16 42 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 43 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 44 H 0.03 0.68 5.66 -51.93 -0.29 0.39 16 45 H -0.02 -0.47 7.54 -51.93 -0.39 -0.86 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 50 H 0.14 1.22 5.44 -52.49 -0.29 0.94 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -33.33 405.83 -9.31 -42.64 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.28 Total: 6.10 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.80 Total: -10.11 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.08 Total: -47.77 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.64 Total: -12.59 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.33 -9.31 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563530341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.283 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds