Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46999 * 2 1 4 4 C 1.52994 * 109.46761 * 240.00214 * 2 1 3 5 5 N 1.46911 * 109.46973 * 180.02562 * 4 2 1 6 6 C 1.46897 * 110.99972 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47009 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47100 * 305.00011 * 7 6 5 9 9 O 1.42902 * 109.46835 * 65.00014 * 7 6 5 10 10 C 1.52994 * 109.47303 * 185.00019 * 7 6 5 11 11 N 1.46900 * 109.47403 * 176.73249 * 10 7 6 12 12 C 1.46897 * 111.00078 * 163.37475 * 11 10 7 13 13 C 1.46900 * 110.99969 * 287.33020 * 11 10 7 14 14 C 1.50699 * 109.47452 * 169.99701 * 13 11 10 15 15 H 1.07997 * 119.99618 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00249 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99780 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00059 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47404 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47161 * 120.00173 * 18 16 14 21 21 H 1.48502 * 109.47299 * 240.00216 * 18 16 14 22 22 O 1.42897 * 109.46951 * 119.99897 * 2 1 3 23 23 C 1.35891 * 117.00449 * 270.66034 * 22 2 1 24 24 C 1.38777 * 120.04013 * 5.58567 * 23 22 2 25 25 C 1.38137 * 119.99253 * 180.02562 * 24 23 22 26 26 C 1.38247 * 120.08120 * 0.02562 * 25 24 23 27 27 C 1.38479 * 120.08661 * 0.02562 * 26 25 24 28 28 F 1.35100 * 119.99643 * 179.72439 * 27 26 25 29 29 C 1.38383 * 120.00257 * 359.97438 * 27 26 25 30 30 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47213 * 300.00033 * 1 2 3 32 32 H 1.09005 * 109.47327 * 59.99552 * 1 2 3 33 33 H 1.09001 * 109.47190 * 299.99669 * 4 2 1 34 34 H 1.09004 * 109.47699 * 60.00325 * 4 2 1 35 35 H 1.00907 * 110.99198 * 303.94988 * 5 4 2 36 36 H 1.08996 * 109.47075 * 299.99654 * 6 5 4 37 37 H 1.09007 * 109.47272 * 60.00165 * 6 5 4 38 38 H 0.96700 * 113.99790 * 60.00053 * 9 7 6 39 39 H 1.09002 * 109.47575 * 296.73350 * 10 7 6 40 40 H 1.09004 * 109.47393 * 56.72804 * 10 7 6 41 41 H 1.08997 * 109.47174 * 65.87805 * 12 11 10 42 42 H 1.08996 * 109.46888 * 185.87476 * 12 11 10 43 43 H 1.09000 * 109.47287 * 305.87623 * 12 11 10 44 44 H 1.09007 * 109.47052 * 290.00045 * 13 11 10 45 45 H 1.09004 * 109.47470 * 49.99425 * 13 11 10 46 46 H 0.97003 * 119.99932 * 180.02562 * 17 16 14 47 47 H 1.07996 * 119.99949 * 0.04885 * 24 23 22 48 48 H 1.07995 * 119.95546 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.95781 * 180.02562 * 26 25 24 50 50 H 1.08002 * 120.04044 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.5091 -0.7218 -1.2490 6 6 4.0354 -1.4080 -2.4364 7 6 5.5649 -1.3876 -2.4011 8 1 5.9124 -0.3590 -2.3037 9 8 6.0258 -2.1536 -1.2863 10 6 6.1130 -1.9906 -3.6959 11 7 7.5792 -1.8999 -3.6961 12 6 8.1621 -2.7970 -4.7028 13 6 8.0209 -0.5148 -3.9066 14 6 9.5040 -0.4171 -3.6580 15 1 10.0627 -1.2961 -3.3726 16 6 10.1479 0.7943 -3.7959 17 7 9.4675 1.8646 -4.1439 18 14 11.9864 0.9152 -3.4884 19 1 12.5144 -0.4210 -3.1128 20 1 12.6648 1.3859 -4.7228 21 1 12.2417 1.8766 -2.3858 22 8 2.0063 -0.6736 1.1668 23 6 2.1988 0.0817 2.2799 24 6 1.8260 1.4184 2.2855 25 6 2.0227 2.1854 3.4174 26 6 2.5911 1.6232 4.5453 27 6 2.9653 0.2900 4.5430 28 9 3.5257 -0.2561 5.6443 29 6 2.7699 -0.4817 3.4110 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1393 35 1 3.8709 0.2180 -1.1838 36 1 3.6856 -2.4402 -2.4444 37 1 3.6863 -0.8990 -3.3349 38 1 5.7532 -3.0812 -1.3068 39 1 5.8138 -3.0365 -3.7648 40 1 5.7149 -1.4419 -4.5494 41 1 7.8786 -2.4581 -5.6991 42 1 9.2482 -2.7886 -4.6115 43 1 7.7920 -3.8100 -4.5445 44 1 7.8039 -0.2161 -4.9322 45 1 7.4928 0.1438 -3.2170 46 1 9.9206 2.7169 -4.2412 47 1 1.3819 1.8588 1.4051 48 1 1.7320 3.2255 3.4212 49 1 2.7435 2.2246 5.4293 50 1 3.0619 -1.5214 3.4084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563530342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -99.328500 kcal Electronic energy + Delta-G solvation = -29322.858068 eV Core-core repulsion = 25072.128297 eV Total energy + Delta-G solvation = -4250.729771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.08886 -40.50388 -38.29231 -37.69461 -35.96829 -34.95217 -32.58308 -32.44455 -30.80386 -29.89440 -29.60638 -27.34590 -26.59051 -24.54132 -23.55763 -23.18724 -22.86889 -21.65559 -20.95325 -19.99272 -18.90187 -17.01772 -16.57640 -16.50291 -16.45387 -16.11867 -15.92985 -15.60585 -15.27314 -15.22971 -14.68172 -14.53895 -14.45822 -14.07887 -13.97446 -13.77596 -13.47782 -13.32301 -13.13920 -12.78146 -12.60704 -12.44867 -12.29971 -11.98727 -11.92039 -11.76123 -11.57871 -11.37304 -11.17871 -11.04786 -10.92482 -10.88454 -10.68118 -10.60748 -10.34094 -9.74089 -9.46930 -9.11133 -9.09413 -8.48976 -8.43561 -8.39962 -7.18440 -6.00564 -4.00482 0.89916 1.08171 2.81003 3.33620 3.37434 3.40947 3.46623 3.83731 4.12821 4.37475 4.45781 4.52459 4.62402 4.69177 4.75680 4.77349 4.86152 4.97368 5.02114 5.12200 5.15315 5.24981 5.32705 5.34873 5.38779 5.48337 5.52402 5.61778 5.69099 5.70537 5.71672 5.76169 5.86946 5.99708 6.04648 6.07417 6.11149 6.34672 6.49050 6.51521 6.72889 6.87108 7.16893 7.27705 7.29004 7.32054 7.83109 8.10332 8.19810 8.29921 8.58091 9.07102 9.63485 11.10711 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.002356 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.052024 B =11879.923225 C =13352.929265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.673 5.673 6 C 0.030 3.970 7 C 0.118 3.882 8 H 0.101 0.899 9 O -0.530 6.530 10 C 0.026 3.974 11 N -0.531 5.531 12 C 0.040 3.960 13 C 0.192 3.808 14 C -0.502 4.502 15 H 0.064 0.936 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.284 1.284 22 O -0.285 6.285 23 C 0.172 3.828 24 C -0.226 4.226 25 C -0.050 4.050 26 C -0.199 4.199 27 C 0.139 3.861 28 F -0.135 7.135 29 C -0.189 4.189 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.343 0.657 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.360 0.640 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.043 0.957 44 H -0.012 1.012 45 H 0.031 0.969 46 H 0.260 0.740 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.505 -2.473 9.975 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 H 0.094 0.906 4 C -0.069 4.069 5 N -0.304 5.304 6 C -0.100 4.100 7 C 0.058 3.942 8 H 0.118 0.882 9 O -0.333 6.333 10 C -0.104 4.104 11 N -0.255 5.255 12 C -0.108 4.108 13 C 0.067 3.933 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.210 1.210 22 O -0.197 6.197 23 C 0.125 3.875 24 C -0.245 4.245 25 C -0.069 4.069 26 C -0.218 4.218 27 C 0.120 3.880 28 F -0.114 7.114 29 C -0.209 4.209 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.205 0.795 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.028 0.972 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.005 0.995 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.938 -2.653 10.964 24.668 hybrid contribution 0.242 0.796 -1.558 1.766 sum -21.695 -1.857 9.406 23.719 Atomic orbital electron populations 1.22323 0.94500 1.03679 1.03042 1.22556 0.93903 0.96864 0.84023 0.90554 1.22102 0.89333 1.01550 0.93876 1.60283 1.05415 1.23417 1.41319 1.22729 0.97230 0.99440 0.90644 1.21863 0.89080 0.97135 0.86132 0.88162 1.86703 1.77996 1.24034 1.44521 1.22684 0.91658 0.99520 0.96497 1.62027 1.04082 1.11262 1.48160 1.22192 1.01485 0.94805 0.92334 1.19782 0.96415 0.82427 0.94663 1.21195 0.92760 0.94795 1.45282 0.91814 1.24983 0.98562 0.95699 0.95480 1.69965 1.35799 0.99728 1.48643 0.86442 0.85152 0.78179 0.77670 1.19622 1.21216 1.20976 1.86225 1.80054 1.35904 1.17537 1.18623 0.92392 0.89619 0.86862 1.21349 1.08635 0.93837 1.00688 1.20754 0.95115 0.99594 0.91388 1.21015 1.05971 0.93850 1.00922 1.17306 0.96046 0.91706 0.82956 1.91517 1.82529 1.86149 1.51200 1.20279 1.06950 1.02203 0.91461 0.91123 0.91588 0.90791 0.89918 0.93346 0.83887 0.90865 0.94696 0.79462 0.92098 0.95365 0.97210 0.90799 0.93856 0.99462 0.95131 0.93078 0.84822 0.84869 0.84784 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.30 37.16 0.35 -0.77 16 2 C 0.08 0.71 2.41 -26.73 -0.06 0.65 16 3 H 0.08 0.61 6.03 -51.93 -0.31 0.30 16 4 C 0.06 0.55 5.38 -3.82 -0.02 0.53 16 5 N -0.67 -8.10 6.32 -113.77 -0.72 -8.82 16 6 C 0.03 0.36 5.32 -3.82 -0.02 0.34 16 7 C 0.12 1.94 3.19 -26.73 -0.09 1.85 16 8 H 0.10 1.95 6.53 -51.93 -0.34 1.61 16 9 O -0.53 -9.39 13.21 -35.23 -0.47 -9.86 16 10 C 0.03 0.45 4.62 -3.83 -0.02 0.44 16 11 N -0.53 -11.60 4.63 -244.37 -1.13 -12.73 16 12 C 0.04 0.80 9.32 60.06 0.56 1.35 16 13 C 0.19 5.06 4.57 -4.98 -0.02 5.03 16 14 C -0.50 -14.40 8.54 -34.44 -0.29 -14.69 16 15 H 0.06 1.83 7.10 -52.49 -0.37 1.46 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 O -0.28 -3.22 9.65 -19.40 -0.19 -3.41 16 23 C 0.17 1.90 6.64 -39.22 -0.26 1.64 16 24 C -0.23 -2.07 8.47 -39.42 -0.33 -2.40 16 25 C -0.05 -0.42 10.04 -39.62 -0.40 -0.82 16 26 C -0.20 -1.87 10.02 -39.49 -0.40 -2.26 16 27 C 0.14 1.56 7.30 -39.44 -0.29 1.27 16 28 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 29 C -0.19 -2.20 9.97 -39.37 -0.39 -2.59 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.41 7.41 -51.93 -0.38 0.02 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.34 4.26 8.73 -39.29 -0.34 3.92 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.36 5.00 9.05 45.56 0.41 5.41 16 39 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 40 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 41 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 42 H 0.07 1.55 6.91 -51.93 -0.36 1.19 16 43 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 44 H -0.01 -0.35 8.11 -51.92 -0.42 -0.77 16 45 H 0.03 0.86 6.40 -51.93 -0.33 0.52 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.13 0.96 5.60 -52.49 -0.29 0.67 16 48 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 50 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 410.94 15.07 6.19 6.19 Total: -1.00 -33.21 410.94 -9.69 -42.90 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.35 Total: 5.47 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.79 Total: -8.98 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.11 Total: -47.80 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.65 Total: -13.26 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.21 -9.69 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563530342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.429 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds