Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47552 * 120.00289 * 2 1 3 5 5 O 1.42907 * 109.46596 * 54.99660 * 4 2 1 6 6 C 1.35902 * 116.99323 * 179.97438 * 5 4 2 7 7 C 1.38766 * 120.04813 * 359.72841 * 6 5 4 8 8 C 1.38125 * 119.99608 * 179.74548 * 7 6 5 9 9 C 1.38253 * 120.07944 * 0.53164 * 8 7 6 10 10 C 1.38474 * 120.08505 * 359.74004 * 9 8 7 11 11 F 1.35098 * 119.99572 * 179.97438 * 10 9 8 12 12 C 1.38385 * 120.00641 * 359.97438 * 10 9 8 13 13 N 1.46899 * 109.47403 * 240.00510 * 2 1 3 14 14 C 1.46896 * 111.00210 * 84.99388 * 13 2 1 15 15 C 1.52999 * 109.47329 * 180.02562 * 14 13 2 16 16 H 1.08992 * 109.47228 * 305.00347 * 15 14 13 17 17 O 1.42902 * 109.46879 * 65.00416 * 15 14 13 18 18 C 1.53002 * 109.47098 * 185.00199 * 15 14 13 19 19 N 1.46902 * 109.46834 * 178.51225 * 18 15 14 20 20 C 1.46905 * 110.99847 * 164.01331 * 19 18 15 21 21 C 1.46900 * 111.00266 * 287.96121 * 19 18 15 22 22 C 1.50702 * 109.47168 * 169.99965 * 21 19 18 23 23 H 1.07993 * 119.99737 * 0.02562 * 22 21 19 24 24 C 1.37882 * 119.99536 * 180.02562 * 22 21 19 25 25 N 1.31508 * 120.00141 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99626 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47091 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47268 * 119.99653 * 26 24 22 29 29 H 1.48500 * 109.47285 * 240.00385 * 26 24 22 30 30 H 1.08994 * 109.46742 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46804 * 299.99664 * 1 2 3 32 32 H 1.09000 * 109.46676 * 59.99636 * 1 2 3 33 33 H 1.08995 * 109.47526 * 174.99717 * 4 2 1 34 34 H 1.09000 * 109.47006 * 295.00395 * 4 2 1 35 35 H 1.08006 * 120.00110 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.96414 * 180.27773 * 8 7 6 37 37 H 1.08005 * 119.95896 * 179.77403 * 9 8 7 38 38 H 1.07998 * 120.04177 * 180.02562 * 12 10 9 39 39 H 1.00903 * 111.00054 * 321.04829 * 13 2 1 40 40 H 1.09000 * 109.47457 * 300.00807 * 14 13 2 41 41 H 1.09000 * 109.46730 * 60.00336 * 14 13 2 42 42 H 0.96707 * 114.00133 * 60.00191 * 17 15 14 43 43 H 1.08999 * 109.47556 * 298.51123 * 18 15 14 44 44 H 1.08995 * 109.47136 * 58.51577 * 18 15 14 45 45 H 1.08998 * 109.47417 * 65.48122 * 20 19 18 46 46 H 1.09002 * 109.46992 * 185.48499 * 20 19 18 47 47 H 1.09007 * 109.46856 * 305.48427 * 20 19 18 48 48 H 1.08997 * 109.47095 * 290.00667 * 21 19 18 49 49 H 1.09006 * 109.46522 * 50.00466 * 21 19 18 50 50 H 0.96999 * 119.99984 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.4703 -2.0305 1.3093 6 6 1.8236 -2.8091 2.3656 7 6 2.7053 -2.3250 3.3215 8 6 3.0596 -3.1154 4.3974 9 6 2.5453 -4.3930 4.5177 10 6 1.6696 -4.8816 3.5628 11 9 1.1686 -6.1306 3.6819 12 6 1.3077 -4.0906 2.4865 13 7 2.0198 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5951 -0.5329 -3.5745 16 1 3.5506 -1.0017 -3.3397 17 8 1.6493 -1.5384 -3.9442 18 6 2.7789 0.4460 -4.7359 19 7 3.3049 -0.2732 -5.9039 20 6 3.1418 0.5213 -7.1287 21 6 4.7111 -0.6473 -5.7025 22 6 5.1431 -1.5864 -6.7992 23 1 4.4432 -1.8759 -7.5689 24 6 6.4320 -2.0758 -6.8196 25 7 7.2841 -1.7235 -5.8819 26 14 6.9677 -3.2392 -8.1793 27 1 5.8304 -3.4765 -9.1044 28 1 8.0980 -2.6360 -8.9301 29 1 7.4005 -4.5294 -7.5850 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7996 1.2055 34 1 1.7518 -0.1585 2.1370 35 1 3.1109 -1.3285 3.2266 36 1 3.7424 -2.7364 5.1435 37 1 2.8265 -5.0107 5.3579 38 1 0.6244 -4.4709 1.7416 39 1 1.4496 -1.4978 -1.4102 40 1 1.0871 0.6165 -2.5525 41 1 2.7588 1.0463 -2.1181 42 1 0.7742 -1.1923 -4.1670 43 1 1.8183 0.8952 -4.9881 44 1 3.4803 1.2278 -4.4446 45 1 3.7592 1.4174 -7.0655 46 1 3.4492 -0.0717 -7.9901 47 1 2.0959 0.8079 -7.2393 48 1 5.3321 0.2482 -5.7252 49 1 4.8209 -1.1413 -4.7370 50 1 8.1907 -2.0681 -5.8961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564846449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -103.728355 kcal Electronic energy + Delta-G solvation = -29147.418292 eV Core-core repulsion = 24896.497730 eV Total energy + Delta-G solvation = -4250.920563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.17105 -40.42077 -38.52668 -37.69214 -36.29685 -35.20110 -32.45508 -31.79932 -30.99909 -29.94899 -28.85672 -27.25180 -27.16328 -25.32514 -23.43684 -23.17437 -22.78995 -21.53523 -20.80350 -19.96305 -18.81840 -16.99113 -16.63583 -16.51590 -16.35129 -16.30346 -16.03968 -15.79598 -15.68571 -15.10671 -14.74683 -14.57898 -14.47155 -14.13688 -14.06565 -13.71904 -13.43392 -13.27569 -13.07653 -12.86876 -12.57889 -12.28808 -12.20129 -11.96029 -11.90058 -11.76059 -11.44672 -11.36769 -11.23191 -11.09770 -11.06524 -10.91075 -10.68323 -10.59338 -10.32087 -9.72284 -9.56935 -9.18600 -9.08758 -8.57301 -8.46634 -8.37763 -7.18093 -5.97628 -3.97788 0.82810 1.00223 2.80441 3.29568 3.35074 3.42350 3.47512 3.89101 4.06495 4.36925 4.47368 4.57119 4.65800 4.68358 4.72680 4.77824 4.91985 4.95351 5.02125 5.07342 5.13087 5.24300 5.30480 5.37334 5.42375 5.44541 5.59113 5.63472 5.66856 5.71738 5.77744 5.81419 5.89516 5.94409 6.02083 6.04987 6.10225 6.34933 6.41287 6.55383 6.72848 6.91086 7.10080 7.32194 7.34793 7.38361 7.84506 8.09231 8.15292 8.24654 8.59864 9.09507 9.65890 11.13566 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.002180 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.908653 B =12843.616182 C =14503.244030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.096 0.904 4 C 0.069 3.931 5 O -0.301 6.301 6 C 0.169 3.831 7 C -0.221 4.221 8 C -0.050 4.050 9 C -0.198 4.198 10 C 0.138 3.862 11 F -0.136 7.136 12 C -0.192 4.192 13 N -0.676 5.676 14 C 0.029 3.971 15 C 0.114 3.886 16 H 0.113 0.887 17 O -0.540 6.540 18 C 0.027 3.973 19 N -0.531 5.531 20 C 0.040 3.960 21 C 0.192 3.808 22 C -0.503 4.503 23 H 0.063 0.937 24 C 0.054 3.946 25 N -0.899 5.899 26 Si 0.897 3.103 27 H -0.272 1.272 28 H -0.286 1.286 29 H -0.284 1.284 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.356 0.644 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.358 0.642 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.010 0.990 46 H 0.073 0.927 47 H 0.042 0.958 48 H -0.012 1.012 49 H 0.033 0.967 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.991 4.406 21.084 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.114 0.886 4 C -0.006 4.006 5 O -0.213 6.213 6 C 0.122 3.878 7 C -0.240 4.240 8 C -0.069 4.069 9 C -0.217 4.217 10 C 0.119 3.881 11 F -0.114 7.114 12 C -0.212 4.212 13 N -0.308 5.308 14 C -0.101 4.101 15 C 0.054 3.946 16 H 0.130 0.870 17 O -0.343 6.343 18 C -0.103 4.103 19 N -0.255 5.255 20 C -0.109 4.109 21 C 0.067 3.933 22 C -0.541 4.541 23 H 0.081 0.919 24 C -0.147 4.147 25 N -0.539 5.539 26 Si 0.725 3.275 27 H -0.197 1.197 28 H -0.212 1.212 29 H -0.210 1.210 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.203 0.797 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.028 0.972 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.006 0.994 49 H 0.051 0.949 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.040 3.546 21.173 25.118 hybrid contribution -0.358 0.644 -0.731 1.038 sum -13.398 4.190 20.442 24.798 Atomic orbital electron populations 1.22447 0.96518 1.03088 1.02002 1.21645 0.93570 0.97306 0.89915 0.88642 1.23034 0.98940 0.80769 0.97906 1.86085 1.66510 1.26691 1.42038 1.18618 0.92334 0.90170 0.86672 1.21354 1.03120 1.02383 0.97127 1.20779 0.96985 0.92501 0.96599 1.21029 1.01675 0.97966 1.01020 1.17296 0.95461 0.79958 0.95411 1.91517 1.85830 1.38271 1.95787 1.20277 1.06938 0.93272 1.00685 1.60450 1.57692 1.09725 1.02960 1.22731 0.99519 0.95940 0.91875 1.22003 0.93866 0.89007 0.89682 0.86974 1.86720 1.23194 1.34621 1.89736 1.22658 0.99113 0.95119 0.93398 1.62048 1.23534 1.39775 1.00171 1.22196 0.98139 0.95665 0.94852 1.19790 0.80531 0.94886 0.98106 1.21184 0.95942 1.26799 1.10207 0.91881 1.24985 0.96657 0.96799 0.96272 1.69963 1.05332 1.45080 1.33560 0.86455 0.78416 0.80731 0.81902 1.19688 1.21224 1.20979 0.91333 0.92238 0.92514 0.90637 0.91777 0.84760 0.84766 0.84743 0.83890 0.82355 0.95231 0.90420 0.79664 0.92345 0.95130 0.97187 0.90789 0.93964 0.99444 0.94887 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.96 37.16 0.33 -1.12 16 2 C 0.09 0.76 2.99 -67.71 -0.20 0.56 16 3 H 0.10 0.74 7.80 -51.93 -0.40 0.34 16 4 C 0.07 0.59 4.58 37.16 0.17 0.76 16 5 O -0.30 -3.19 9.20 -19.43 -0.18 -3.37 16 6 C 0.17 1.76 6.68 -39.22 -0.26 1.49 16 7 C -0.22 -1.91 9.04 -39.43 -0.36 -2.27 16 8 C -0.05 -0.39 10.04 -39.62 -0.40 -0.79 16 9 C -0.20 -1.70 10.02 -39.49 -0.40 -2.10 16 10 C 0.14 1.43 7.30 -39.44 -0.29 1.14 16 11 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 12 C -0.19 -2.05 9.97 -39.37 -0.39 -2.44 16 13 N -0.68 -7.96 6.20 -106.73 -0.66 -8.63 16 14 C 0.03 0.35 5.16 -3.83 -0.02 0.33 16 15 C 0.11 1.84 3.23 -26.73 -0.09 1.75 16 16 H 0.11 2.25 6.55 -51.93 -0.34 1.91 16 17 O -0.54 -8.93 12.75 -35.23 -0.45 -9.38 16 18 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 19 N -0.53 -11.51 4.60 -244.36 -1.12 -12.64 16 20 C 0.04 0.78 9.32 60.07 0.56 1.34 16 21 C 0.19 5.07 4.57 -4.97 -0.02 5.05 16 22 C -0.50 -14.47 8.54 -34.44 -0.29 -14.76 16 23 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 24 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 25 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 26 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 30 H 0.07 0.62 7.55 -51.93 -0.39 0.23 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 33 H 0.08 0.69 7.65 -51.93 -0.40 0.29 16 34 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 35 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.36 4.53 8.03 -39.29 -0.32 4.21 16 40 H 0.03 0.30 7.44 -51.93 -0.39 -0.08 16 41 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 42 H 0.36 4.44 9.05 45.56 0.41 4.86 16 43 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 44 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 45 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 46 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 47 H 0.04 0.69 7.97 -51.93 -0.41 0.27 16 48 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 49 H 0.03 0.94 6.38 -51.93 -0.33 0.60 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -32.73 409.33 -9.59 -42.32 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.33 Total: 5.43 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.77 Total: -9.14 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.05 Total: -47.71 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.63 Total: -12.75 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.73 -9.59 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564846449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.411 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds