Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46670 * 2 1 4 4 C 1.52995 * 109.47525 * 120.00694 * 2 1 3 5 5 O 1.42900 * 109.47192 * 54.99637 * 4 2 1 6 6 C 1.35899 * 116.99803 * 179.97438 * 5 4 2 7 7 C 1.38770 * 120.04440 * 359.73340 * 6 5 4 8 8 C 1.38133 * 119.99239 * 179.74312 * 7 6 5 9 9 C 1.38250 * 120.08171 * 0.52713 * 8 7 6 10 10 C 1.38478 * 120.08388 * 359.74712 * 9 8 7 11 11 F 1.35101 * 119.99479 * 180.02562 * 10 9 8 12 12 C 1.38385 * 120.00665 * 359.97438 * 10 9 8 13 13 N 1.46902 * 109.46815 * 240.01072 * 2 1 3 14 14 C 1.46899 * 111.00443 * 84.99485 * 13 2 1 15 15 C 1.52996 * 109.47048 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.47458 * 60.00045 * 15 14 13 17 17 O 1.42903 * 109.47405 * 300.00024 * 15 14 13 18 18 C 1.52994 * 109.47262 * 180.02562 * 15 14 13 19 19 N 1.46901 * 109.47572 * 180.46638 * 18 15 14 20 20 C 1.46902 * 111.00073 * 199.85206 * 19 18 15 21 21 C 1.46899 * 111.00148 * 75.89233 * 19 18 15 22 22 C 1.50701 * 109.47133 * 190.00147 * 21 19 18 23 23 H 1.07998 * 120.00007 * 0.02562 * 22 21 19 24 24 C 1.37870 * 120.00204 * 179.97438 * 22 21 19 25 25 N 1.31520 * 119.99780 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00304 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47172 * 90.00108 * 26 24 22 28 28 H 1.48498 * 109.46833 * 210.00248 * 26 24 22 29 29 H 1.48502 * 109.46831 * 330.00140 * 26 24 22 30 30 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47156 * 299.99168 * 1 2 3 32 32 H 1.08998 * 109.47682 * 59.99345 * 1 2 3 33 33 H 1.08998 * 109.47109 * 175.00346 * 4 2 1 34 34 H 1.09007 * 109.46837 * 295.00294 * 4 2 1 35 35 H 1.07999 * 120.00113 * 359.97438 * 7 6 5 36 36 H 1.08006 * 119.95620 * 180.27055 * 8 7 6 37 37 H 1.07997 * 119.95914 * 179.76283 * 9 8 7 38 38 H 1.07989 * 120.04266 * 180.02562 * 12 10 9 39 39 H 1.00902 * 110.99255 * 208.95298 * 13 2 1 40 40 H 1.08991 * 109.47008 * 299.99660 * 14 13 2 41 41 H 1.09002 * 109.46797 * 60.00001 * 14 13 2 42 42 H 0.96695 * 114.00187 * 300.00468 * 17 15 14 43 43 H 1.09007 * 109.47129 * 300.46405 * 18 15 14 44 44 H 1.09000 * 109.47236 * 60.45897 * 18 15 14 45 45 H 1.09003 * 109.47419 * 64.81648 * 20 19 18 46 46 H 1.09001 * 109.46948 * 184.81833 * 20 19 18 47 47 H 1.09007 * 109.46906 * 304.81689 * 20 19 18 48 48 H 1.09005 * 109.47113 * 310.00284 * 21 19 18 49 49 H 1.09000 * 109.46953 * 70.00471 * 21 19 18 50 50 H 0.97003 * 119.99992 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4703 -2.0305 1.3092 6 6 1.8236 -2.8092 2.3654 7 6 2.7053 -2.3249 3.3214 8 6 3.0596 -3.1154 4.3974 9 6 2.5453 -4.3931 4.5177 10 6 1.6697 -4.8817 3.5626 11 9 1.1679 -6.1303 3.6822 12 6 1.3079 -4.0907 2.4863 13 7 2.0196 -0.6923 -1.1996 14 6 2.0823 0.2229 -2.3470 15 6 2.5960 -0.5325 -3.5743 16 1 1.9200 -1.3563 -3.8032 17 8 3.9011 -1.0482 -3.3045 18 6 2.6619 0.4208 -4.7692 19 7 3.1445 -0.3071 -5.9504 20 6 3.6652 0.6203 -6.9638 21 6 2.0883 -1.1605 -6.5108 22 6 2.6793 -2.0689 -7.5580 23 1 3.7341 -2.0176 -7.7844 24 6 1.8737 -2.9661 -8.2265 25 7 0.5893 -3.0288 -7.9505 26 14 2.6063 -4.0925 -9.5241 27 1 3.0586 -5.3547 -8.8857 28 1 1.5787 -4.3980 -10.5516 29 1 3.7641 -3.4201 -10.1666 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.1264 -0.7995 1.2054 34 1 1.7517 -0.1585 2.1369 35 1 3.1114 -1.3288 3.2262 36 1 3.7424 -2.7363 5.1434 37 1 2.8267 -5.0108 5.3577 38 1 0.6248 -4.4710 1.7414 39 1 2.9172 -1.1203 -1.0289 40 1 1.0869 0.6165 -2.5525 41 1 2.7587 1.0465 -2.1182 42 1 4.5562 -0.3693 -3.0925 43 1 1.6680 0.8209 -4.9700 44 1 3.3444 1.2400 -4.5432 45 1 4.5457 1.1296 -6.5721 46 1 3.9365 0.0633 -7.8606 47 1 2.8997 1.3560 -7.2106 48 1 1.6468 -1.7615 -5.7157 49 1 1.3187 -0.5358 -6.9641 50 1 0.0224 -3.6598 -8.4211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564846453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -101.498334 kcal Electronic energy + Delta-G solvation = -29106.731926 eV Core-core repulsion = 24855.908065 eV Total energy + Delta-G solvation = -4250.823862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.18801 -40.48614 -38.51973 -37.72238 -36.25304 -35.19629 -32.45138 -31.81920 -31.02261 -29.98045 -28.97438 -27.29990 -27.18073 -25.35036 -23.46261 -23.20449 -22.70490 -21.45556 -20.67677 -19.96720 -18.90051 -17.09419 -16.63263 -16.57874 -16.41237 -16.35034 -16.07486 -15.86864 -15.75616 -15.08793 -14.68332 -14.66936 -14.48530 -14.13480 -14.01510 -13.79041 -13.40840 -13.30157 -13.03916 -12.61315 -12.53966 -12.37935 -12.27820 -11.97101 -11.85228 -11.79463 -11.44707 -11.32896 -11.18854 -11.10930 -11.03303 -10.87521 -10.67866 -10.58100 -10.31880 -9.72890 -9.59759 -9.22346 -9.09854 -8.62492 -8.46171 -8.37261 -7.17739 -5.97067 -3.97576 0.78338 0.95738 2.72123 3.24808 3.36977 3.42569 3.45774 3.86561 4.02190 4.28000 4.47550 4.51524 4.56540 4.60883 4.67085 4.74747 4.84792 4.89096 5.00066 5.04454 5.12640 5.23953 5.33632 5.38906 5.42148 5.51367 5.58665 5.67539 5.72417 5.74286 5.76847 5.84285 5.87114 5.95145 6.04715 6.14119 6.24251 6.33292 6.36965 6.55946 6.74061 6.91284 7.06251 7.32048 7.35316 7.36049 7.84456 8.08384 8.15226 8.25090 8.59980 9.09460 9.66064 11.14034 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.002104 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.234008 B =13302.557799 C =14840.143350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.061 0.939 4 C 0.059 3.941 5 O -0.288 6.288 6 C 0.165 3.835 7 C -0.224 4.224 8 C -0.051 4.051 9 C -0.198 4.198 10 C 0.140 3.860 11 F -0.134 7.134 12 C -0.189 4.189 13 N -0.672 5.672 14 C 0.030 3.970 15 C 0.117 3.883 16 H 0.111 0.889 17 O -0.540 6.540 18 C 0.027 3.973 19 N -0.531 5.531 20 C 0.038 3.962 21 C 0.192 3.808 22 C -0.504 4.504 23 H 0.063 0.937 24 C 0.054 3.946 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.288 1.288 29 H -0.274 1.274 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.349 0.651 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.357 0.643 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.007 0.993 48 H 0.032 0.968 49 H -0.012 1.012 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 7.730 26.447 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.079 0.921 4 C -0.017 4.017 5 O -0.200 6.200 6 C 0.119 3.881 7 C -0.243 4.243 8 C -0.069 4.069 9 C -0.217 4.217 10 C 0.120 3.880 11 F -0.113 7.113 12 C -0.209 4.209 13 N -0.306 5.306 14 C -0.100 4.100 15 C 0.057 3.943 16 H 0.129 0.871 17 O -0.342 6.342 18 C -0.103 4.103 19 N -0.255 5.255 20 C -0.111 4.111 21 C 0.067 3.933 22 C -0.543 4.543 23 H 0.081 0.919 24 C -0.147 4.147 25 N -0.539 5.539 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.214 1.214 29 H -0.199 1.199 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.202 0.798 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.026 0.974 48 H 0.050 0.950 49 H 0.006 0.994 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.666 6.425 26.073 26.985 hybrid contribution 0.616 0.950 -0.530 1.250 sum 3.282 7.376 25.544 26.789 Atomic orbital electron populations 1.21743 0.93548 1.03475 1.01073 1.21645 0.97532 0.94955 0.88180 0.92147 1.23108 0.97676 0.81880 0.99018 1.86242 1.66171 1.25968 1.41608 1.18676 0.92380 0.90303 0.86785 1.21324 1.03451 1.02214 0.97321 1.20761 0.97092 0.92519 0.96552 1.21031 1.01682 0.97956 1.00997 1.17309 0.95335 0.80011 0.95329 1.91525 1.85767 1.38244 1.95758 1.20322 1.06683 0.93206 1.00655 1.60314 1.34519 1.32541 1.03243 1.22746 1.01345 0.93744 0.92198 1.21972 0.85000 0.97262 0.90099 0.87084 1.86720 1.19189 1.36385 1.91898 1.22659 0.98429 0.95555 0.93691 1.62027 1.37843 1.20027 1.05588 1.22227 0.97274 0.94757 0.96834 1.19772 0.87742 0.91115 0.94634 1.21144 0.95196 1.18697 1.19245 0.91911 1.24988 0.94825 0.97394 0.97486 1.69960 1.04338 1.37093 1.42502 0.86502 0.78646 0.81133 0.81143 1.20583 1.21393 1.19933 0.90808 0.92892 0.92377 0.91745 0.91224 0.84969 0.84817 0.84722 0.83646 0.83053 0.90244 0.95480 0.79805 0.94930 0.92438 0.93856 0.90444 0.97447 0.94990 0.99432 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.22 37.16 0.34 -1.01 16 2 C 0.09 0.78 3.02 -67.71 -0.20 0.58 16 3 H 0.06 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.06 0.46 4.29 37.16 0.16 0.62 16 5 O -0.29 -3.08 9.20 -19.42 -0.18 -3.26 16 6 C 0.17 1.66 6.68 -39.22 -0.26 1.40 16 7 C -0.22 -1.76 9.04 -39.42 -0.36 -2.12 16 8 C -0.05 -0.36 10.04 -39.62 -0.40 -0.76 16 9 C -0.20 -1.60 10.02 -39.49 -0.40 -2.00 16 10 C 0.14 1.41 7.30 -39.44 -0.29 1.12 16 11 F -0.13 -1.48 17.27 2.25 0.04 -1.44 16 12 C -0.19 -2.02 9.97 -39.37 -0.39 -2.41 16 13 N -0.67 -7.92 6.26 -106.73 -0.67 -8.59 16 14 C 0.03 0.36 5.19 -3.83 -0.02 0.34 16 15 C 0.12 1.88 3.30 -26.74 -0.09 1.79 16 16 H 0.11 2.24 6.78 -51.93 -0.35 1.88 16 17 O -0.54 -8.77 12.55 -35.23 -0.44 -9.22 16 18 C 0.03 0.45 4.65 -3.83 -0.02 0.44 16 19 N -0.53 -11.52 4.56 -244.36 -1.11 -12.64 16 20 C 0.04 0.74 9.37 60.07 0.56 1.30 16 21 C 0.19 5.10 4.55 -4.98 -0.02 5.08 16 22 C -0.50 -14.52 8.39 -34.44 -0.29 -14.81 16 23 H 0.06 1.80 7.17 -52.49 -0.38 1.42 16 24 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 25 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 26 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.07 0.86 7.56 -51.93 -0.39 0.46 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 33 H 0.06 0.44 7.53 -51.93 -0.39 0.05 16 34 H 0.07 0.41 7.68 -51.92 -0.40 0.01 16 35 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.35 4.14 7.67 -39.29 -0.30 3.84 16 40 H 0.08 0.97 7.43 -51.93 -0.39 0.58 16 41 H 0.03 0.27 8.06 -51.93 -0.42 -0.14 16 42 H 0.36 4.28 9.04 45.56 0.41 4.70 16 43 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 44 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 47 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 48 H 0.03 0.91 6.63 -51.93 -0.34 0.57 16 49 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -33.07 409.18 -9.59 -42.66 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.34 Total: 4.65 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.77 Total: -8.97 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -1.04 Total: -47.78 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.62 Total: -12.47 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.07 -9.59 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564846453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.838 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds