Wall clock time and date at job start Sat Apr 11 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46670 * 2 1 4 4 C 1.52995 * 109.47525 * 120.00694 * 2 1 3 5 5 O 1.42900 * 109.47192 * 54.99637 * 4 2 1 6 6 C 1.35899 * 116.99803 * 179.97438 * 5 4 2 7 7 C 1.38770 * 120.04440 * 359.73340 * 6 5 4 8 8 C 1.38133 * 119.99239 * 179.74312 * 7 6 5 9 9 C 1.38250 * 120.08171 * 0.52713 * 8 7 6 10 10 C 1.38478 * 120.08388 * 359.74712 * 9 8 7 11 11 F 1.35101 * 119.99479 * 180.02562 * 10 9 8 12 12 C 1.38385 * 120.00665 * 359.97438 * 10 9 8 13 13 N 1.46902 * 109.46815 * 240.01072 * 2 1 3 14 14 C 1.46899 * 111.00443 * 84.99485 * 13 2 1 15 15 C 1.52996 * 109.47048 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.47458 * 60.00045 * 15 14 13 17 17 O 1.42903 * 109.47405 * 300.00024 * 15 14 13 18 18 C 1.52994 * 109.47262 * 180.02562 * 15 14 13 19 19 N 1.46901 * 109.47572 * 180.46638 * 18 15 14 20 20 C 1.46902 * 111.00073 * 199.85206 * 19 18 15 21 21 C 1.46899 * 111.00148 * 75.89233 * 19 18 15 22 22 C 1.50701 * 109.47133 * 190.00147 * 21 19 18 23 23 H 1.07998 * 120.00007 * 0.02562 * 22 21 19 24 24 C 1.37870 * 120.00204 * 179.97438 * 22 21 19 25 25 N 1.31520 * 119.99780 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00304 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47172 * 90.00108 * 26 24 22 28 28 H 1.48498 * 109.46833 * 210.00248 * 26 24 22 29 29 H 1.48502 * 109.46831 * 330.00140 * 26 24 22 30 30 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47156 * 299.99168 * 1 2 3 32 32 H 1.08998 * 109.47682 * 59.99345 * 1 2 3 33 33 H 1.08998 * 109.47109 * 175.00346 * 4 2 1 34 34 H 1.09007 * 109.46837 * 295.00294 * 4 2 1 35 35 H 1.07999 * 120.00113 * 359.97438 * 7 6 5 36 36 H 1.08006 * 119.95620 * 180.27055 * 8 7 6 37 37 H 1.07997 * 119.95914 * 179.76283 * 9 8 7 38 38 H 1.07989 * 120.04266 * 180.02562 * 12 10 9 39 39 H 1.00902 * 110.99255 * 208.95298 * 13 2 1 40 40 H 1.08991 * 109.47008 * 299.99660 * 14 13 2 41 41 H 1.09002 * 109.46797 * 60.00001 * 14 13 2 42 42 H 0.96695 * 114.00187 * 300.00468 * 17 15 14 43 43 H 1.09007 * 109.47129 * 300.46405 * 18 15 14 44 44 H 1.09000 * 109.47236 * 60.45897 * 18 15 14 45 45 H 1.09003 * 109.47419 * 64.81648 * 20 19 18 46 46 H 1.09001 * 109.46948 * 184.81833 * 20 19 18 47 47 H 1.09007 * 109.46906 * 304.81689 * 20 19 18 48 48 H 1.09005 * 109.47113 * 310.00284 * 21 19 18 49 49 H 1.09000 * 109.46953 * 70.00471 * 21 19 18 50 50 H 0.97003 * 119.99992 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4703 -2.0305 1.3092 6 6 1.8236 -2.8092 2.3654 7 6 2.7053 -2.3249 3.3214 8 6 3.0596 -3.1154 4.3974 9 6 2.5453 -4.3931 4.5177 10 6 1.6697 -4.8817 3.5626 11 9 1.1679 -6.1303 3.6822 12 6 1.3079 -4.0907 2.4863 13 7 2.0196 -0.6923 -1.1996 14 6 2.0823 0.2229 -2.3470 15 6 2.5960 -0.5325 -3.5743 16 1 1.9200 -1.3563 -3.8032 17 8 3.9011 -1.0482 -3.3045 18 6 2.6619 0.4208 -4.7692 19 7 3.1445 -0.3071 -5.9504 20 6 3.6652 0.6203 -6.9638 21 6 2.0883 -1.1605 -6.5108 22 6 2.6793 -2.0689 -7.5580 23 1 3.7341 -2.0176 -7.7844 24 6 1.8737 -2.9661 -8.2265 25 7 0.5893 -3.0288 -7.9505 26 14 2.6063 -4.0925 -9.5241 27 1 3.0586 -5.3547 -8.8857 28 1 1.5787 -4.3980 -10.5516 29 1 3.7641 -3.4201 -10.1666 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.1264 -0.7995 1.2054 34 1 1.7517 -0.1585 2.1369 35 1 3.1114 -1.3288 3.2262 36 1 3.7424 -2.7363 5.1434 37 1 2.8267 -5.0108 5.3577 38 1 0.6248 -4.4710 1.7414 39 1 2.9172 -1.1203 -1.0289 40 1 1.0869 0.6165 -2.5525 41 1 2.7587 1.0465 -2.1182 42 1 4.5562 -0.3693 -3.0925 43 1 1.6680 0.8209 -4.9700 44 1 3.3444 1.2400 -4.5432 45 1 4.5457 1.1296 -6.5721 46 1 3.9365 0.0633 -7.8606 47 1 2.8997 1.3560 -7.2106 48 1 1.6468 -1.7615 -5.7157 49 1 1.3187 -0.5358 -6.9641 50 1 0.0224 -3.6598 -8.4211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564846453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:56 Heat of formation + Delta-G solvation = -126.799412 kcal Electronic energy + Delta-G solvation = -29107.829064 eV Core-core repulsion = 24855.908065 eV Total energy + Delta-G solvation = -4251.920999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.98077 -41.15686 -39.66545 -38.60997 -37.47968 -36.43352 -34.60811 -32.72632 -31.76007 -30.70858 -30.21540 -29.23272 -27.94445 -26.72982 -25.15974 -23.90976 -23.47535 -22.75193 -21.82980 -21.21901 -19.57747 -18.61998 -17.88066 -17.45173 -17.31658 -17.08503 -17.04345 -16.96540 -16.57618 -16.54911 -16.23114 -15.91071 -15.42563 -15.38109 -15.02638 -14.84277 -14.69642 -14.45771 -14.00100 -13.91518 -13.74048 -13.41633 -13.25622 -13.15270 -12.92117 -12.89202 -12.73111 -12.56535 -12.55261 -12.44862 -12.30796 -12.14988 -12.05836 -11.84157 -11.68825 -11.50565 -11.32919 -10.73754 -10.61362 -9.91350 -9.31214 -9.26581 -8.94488 -8.20728 -6.30367 0.11216 0.30441 1.38886 1.41880 1.52105 2.08420 2.39760 2.59904 2.92678 3.11840 3.34834 3.44414 3.66601 3.72157 3.86803 3.96288 4.00750 4.02899 4.08631 4.18307 4.25718 4.32474 4.35798 4.42498 4.45079 4.48945 4.56308 4.64105 4.69219 4.77834 4.78614 4.93475 4.99436 5.00964 5.08763 5.10140 5.14296 5.22413 5.26391 5.30734 5.33616 5.44749 5.64382 5.73082 6.05837 6.11144 6.35279 6.41048 6.49274 6.65639 6.85909 7.08329 7.38970 8.90533 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.002104 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.234008 B =13302.557799 C =14840.143350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.088 0.912 4 C 0.055 3.945 5 O -0.314 6.314 6 C 0.150 3.850 7 C -0.218 4.218 8 C -0.044 4.044 9 C -0.197 4.197 10 C 0.118 3.882 11 F -0.147 7.147 12 C -0.216 4.216 13 N -0.695 5.695 14 C 0.046 3.954 15 C 0.126 3.874 16 H 0.056 0.944 17 O -0.558 6.558 18 C 0.027 3.973 19 N -0.542 5.542 20 C 0.039 3.961 21 C 0.210 3.790 22 C -0.522 4.522 23 H 0.062 0.938 24 C -0.002 4.002 25 N -0.936 5.936 26 Si 0.969 3.031 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.262 1.262 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.348 0.652 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.379 0.621 43 H 0.026 0.974 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.012 0.988 48 H 0.000 1.000 49 H -0.042 1.042 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 9.852 28.160 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.106 0.894 4 C -0.019 4.019 5 O -0.227 6.227 6 C 0.104 3.896 7 C -0.236 4.236 8 C -0.061 4.061 9 C -0.216 4.216 10 C 0.099 3.901 11 F -0.126 7.126 12 C -0.236 4.236 13 N -0.330 5.330 14 C -0.084 4.084 15 C 0.065 3.935 16 H 0.074 0.926 17 O -0.363 6.363 18 C -0.102 4.102 19 N -0.266 5.266 20 C -0.109 4.109 21 C 0.084 3.916 22 C -0.560 4.560 23 H 0.080 0.920 24 C -0.200 4.200 25 N -0.577 5.577 26 Si 0.794 3.206 27 H -0.201 1.201 28 H -0.206 1.206 29 H -0.186 1.186 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.172 0.828 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.227 0.773 43 H 0.044 0.956 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.030 0.970 48 H 0.018 0.982 49 H -0.024 1.024 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.349 8.580 27.802 29.584 hybrid contribution -0.194 0.346 -1.003 1.078 sum 5.156 8.926 26.799 28.713 Atomic orbital electron populations 1.21729 0.94555 1.01757 1.01696 1.21730 0.96654 0.96223 0.87517 0.89409 1.23295 0.98418 0.80906 0.99329 1.86214 1.66983 1.27302 1.42232 1.18824 0.93278 0.90041 0.87476 1.21656 1.02138 1.03382 0.96466 1.21221 0.96593 0.91600 0.96727 1.21352 1.00636 0.98838 1.00737 1.17579 0.96598 0.79766 0.96195 1.91485 1.86162 1.39034 1.95880 1.20374 1.07651 0.94429 1.01119 1.60237 1.34738 1.33571 1.04415 1.22495 1.01568 0.93869 0.90503 1.21669 0.84467 0.95506 0.91818 0.92576 1.86667 1.19695 1.37965 1.92023 1.22792 0.99004 0.96407 0.92015 1.61935 1.36092 1.21466 1.07108 1.22251 0.98759 0.94149 0.95755 1.19356 0.88179 0.91011 0.93071 1.21482 0.95241 1.19346 1.19940 0.91994 1.25952 0.95187 0.99023 0.99824 1.70097 1.05808 1.37987 1.43764 0.85381 0.78230 0.78773 0.78233 1.20136 1.20599 1.18564 0.93692 0.90728 0.93258 0.90248 0.88581 0.82245 0.81111 0.82762 0.85430 0.83134 0.90707 0.92016 0.77349 0.95586 0.88262 0.89864 0.92796 0.96972 0.98185 1.02433 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.22 71.98 0.66 -1.96 16 2 C 0.09 1.41 3.02 44.91 0.14 1.55 16 3 H 0.09 0.98 7.80 -2.39 -0.02 0.96 16 4 C 0.06 0.74 4.29 71.98 0.31 1.05 16 5 O -0.31 -6.70 9.20 -92.41 -0.85 -7.55 16 6 C 0.15 2.99 6.68 22.50 0.15 3.14 16 7 C -0.22 -2.86 9.04 22.37 0.20 -2.65 16 8 C -0.04 -0.48 10.04 22.25 0.22 -0.25 16 9 C -0.20 -2.90 10.02 22.33 0.22 -2.68 16 10 C 0.12 2.47 7.30 22.36 0.16 2.63 16 11 F -0.15 -3.44 17.27 44.97 0.78 -2.66 16 12 C -0.22 -4.96 9.97 22.41 0.22 -4.74 16 13 N -0.70 -15.92 6.26 -491.59 -3.08 -18.99 16 14 C 0.05 1.04 5.19 86.30 0.45 1.49 16 15 C 0.13 4.07 3.30 30.59 0.10 4.18 16 16 H 0.06 2.45 6.78 -2.39 -0.02 2.43 16 17 O -0.56 -17.74 12.55 -148.98 -1.87 -19.61 16 18 C 0.03 0.90 4.65 86.30 0.40 1.30 16 19 N -0.54 -23.64 4.56 -927.02 -4.22 -27.87 16 20 C 0.04 1.48 9.37 127.69 1.20 2.68 16 21 C 0.21 11.68 4.55 85.56 0.39 12.07 16 22 C -0.52 -30.90 8.39 25.60 0.21 -30.69 16 23 H 0.06 3.60 7.17 -2.91 -0.02 3.58 16 24 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 25 N -0.94 -58.70 13.29 21.45 0.28 -58.41 16 26 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 30 H 0.04 1.10 7.56 -2.38 -0.02 1.08 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 33 H 0.08 0.82 7.53 -2.39 -0.02 0.81 16 34 H 0.10 0.77 7.68 -2.38 -0.02 0.75 16 35 H 0.16 1.15 6.30 -2.91 -0.02 1.13 16 36 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.13 3.18 8.06 -2.92 -0.02 3.16 16 39 H 0.35 7.95 7.67 -89.69 -0.69 7.27 16 40 H 0.07 1.78 7.43 -2.39 -0.02 1.76 16 41 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 42 H 0.38 8.11 9.04 -74.06 -0.67 7.44 16 43 H 0.03 0.91 8.00 -2.38 -0.02 0.89 16 44 H 0.10 2.51 7.94 -2.39 -0.02 2.49 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.05 2.28 6.67 -2.39 -0.02 2.26 16 47 H 0.01 0.43 8.13 -2.38 -0.02 0.42 16 48 H 0.00 0.01 6.63 -2.38 -0.02 -0.01 16 49 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 50 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.93 409.18 -1.83 -78.77 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.41 Total: 20.75 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.51 Total: -12.56 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -7.02 Total: -105.28 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -2.72 Total: -27.16 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.93 -1.83 -78.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564846453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.031 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds