Wall clock time and date at job start Sat Apr 11 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 117.00331 * 2 1 4 4 C 1.38661 * 120.06555 * 0.02633 * 3 2 1 5 5 C 1.38177 * 119.97149 * 179.70318 * 4 3 2 6 6 C 1.38257 * 120.09677 * 0.54077 * 5 4 3 7 7 C 1.50697 * 119.93969 * 179.72472 * 6 5 4 8 8 C 1.52997 * 109.47466 * 269.73090 * 7 6 5 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 13 13 O 1.42902 * 109.47467 * 300.00151 * 11 10 9 14 14 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 15 15 N 1.46894 * 109.47283 * 184.99927 * 14 11 10 16 16 C 1.46902 * 110.99955 * 66.04903 * 15 14 11 17 17 C 1.46899 * 111.00197 * 190.00274 * 15 14 11 18 18 C 1.50696 * 109.47341 * 170.00280 * 17 15 14 19 19 H 1.08008 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00114 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00161 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99949 * 359.97438 * 20 18 17 23 23 H 1.48509 * 109.46911 * 90.00533 * 22 20 18 24 24 H 1.48503 * 109.47249 * 210.00245 * 22 20 18 25 25 H 1.48501 * 109.47295 * 330.00291 * 22 20 18 26 26 C 1.38260 * 120.12383 * 359.45671 * 6 5 4 27 27 C 1.38332 * 120.02922 * 0.26972 * 26 6 5 28 28 F 1.35101 * 120.04601 * 179.97438 * 27 26 6 29 29 H 1.08994 * 109.47722 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47067 * 300.00045 * 1 2 3 31 31 H 1.09009 * 109.46875 * 59.99893 * 1 2 3 32 32 H 1.08003 * 120.01272 * 359.97141 * 4 3 2 33 33 H 1.08006 * 119.95173 * 180.29472 * 5 4 3 34 34 H 1.09002 * 109.47120 * 149.72843 * 7 6 5 35 35 H 1.08998 * 109.46862 * 29.73645 * 7 6 5 36 36 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 38 38 H 1.00908 * 110.99847 * 56.04959 * 9 8 7 39 39 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 40 40 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 41 41 H 0.96695 * 113.99730 * 300.00658 * 13 11 10 42 42 H 1.08998 * 109.46988 * 305.00703 * 14 11 10 43 43 H 1.09010 * 109.46810 * 65.00444 * 14 11 10 44 44 H 1.08997 * 109.46962 * 59.99783 * 16 15 14 45 45 H 1.09003 * 109.47103 * 179.97438 * 16 15 14 46 46 H 1.09003 * 109.46735 * 299.99855 * 16 15 14 47 47 H 1.09003 * 109.47141 * 289.99959 * 17 15 14 48 48 H 1.09000 * 109.47139 * 49.99733 * 17 15 14 49 49 H 0.97004 * 120.00209 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.98652 * 180.25153 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 0.0006 5 6 1.9218 3.6052 0.0068 6 6 3.3025 3.6776 0.0011 7 6 3.9852 5.0210 0.0016 8 6 4.2162 5.4763 -1.4406 9 7 4.8812 6.7862 -1.4401 10 6 5.1202 7.2559 -2.8113 11 6 5.8131 8.6193 -2.7699 12 1 6.7647 8.5276 -2.2462 13 8 4.9803 9.5563 -2.0838 14 6 6.0615 9.1088 -4.1981 15 7 6.8321 10.3588 -4.1602 16 6 8.1825 10.1289 -3.6298 17 6 6.8875 10.9835 -5.4886 18 6 7.4662 12.3697 -5.3681 19 1 7.7628 12.7489 -4.4013 20 6 7.6162 13.1543 -6.4919 21 7 8.1217 14.3638 -6.3869 22 14 7.1026 12.4987 -8.1640 23 1 5.6805 12.8448 -8.4159 24 1 7.9542 13.1074 -9.2173 25 1 7.2647 11.0227 -8.1881 26 6 4.0580 2.5197 0.0006 27 6 3.4333 1.2855 0.0001 28 9 4.1713 0.1538 -0.0009 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 0.2138 2.3201 0.0005 33 1 1.3343 4.5115 0.0120 34 1 4.9432 4.9415 0.5155 35 1 3.3564 5.7479 0.5159 36 1 3.2582 5.5558 -1.9545 37 1 4.8451 4.7494 -1.9547 38 1 5.7416 6.7547 -0.9139 39 1 5.7558 6.5415 -3.3345 40 1 4.1686 7.3472 -3.3351 41 1 4.1151 9.6882 -2.4951 42 1 6.6215 8.3531 -4.7489 43 1 5.1063 9.2857 -4.6928 44 1 8.7058 9.4148 -4.2656 45 1 8.7315 11.0704 -3.6132 46 1 8.1124 9.7308 -2.6175 47 1 7.5162 10.3833 -6.1464 48 1 5.8815 11.0446 -5.9037 49 1 8.2268 14.9160 -7.1775 50 1 5.1364 2.5788 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569961148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:02 Heat of formation + Delta-G solvation = -100.693065 kcal Electronic energy + Delta-G solvation = -28249.715564 eV Core-core repulsion = 23998.926622 eV Total energy + Delta-G solvation = -4250.788943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.16284 -40.56057 -38.65253 -38.20112 -36.32307 -35.22969 -32.70842 -32.43450 -31.22655 -30.10875 -28.73702 -27.78888 -27.14926 -25.64640 -23.67031 -23.27714 -22.69093 -21.60807 -21.01176 -20.11518 -18.80996 -17.45964 -17.22699 -16.92676 -16.65451 -16.54834 -15.80281 -15.51212 -15.37316 -15.33005 -15.23887 -14.81750 -14.71521 -14.33909 -14.21489 -14.04478 -13.79696 -13.32922 -13.18226 -12.92423 -12.72141 -12.63014 -12.45034 -12.23235 -12.02560 -11.89875 -11.65025 -11.60350 -11.38057 -11.31059 -11.19590 -10.98259 -10.78706 -10.53173 -10.29277 -10.01626 -9.53255 -9.42389 -9.22237 -8.61717 -8.57208 -8.56618 -7.33351 -6.04448 -4.01628 0.63550 0.72171 2.61343 3.02358 3.27318 3.34802 3.35999 3.69446 3.82639 4.15896 4.31160 4.41572 4.47206 4.59247 4.61991 4.69039 4.71382 4.76784 4.81995 4.90984 4.93529 5.00370 5.08391 5.20662 5.25076 5.29038 5.39996 5.44685 5.52656 5.54730 5.58368 5.60912 5.67262 5.73301 5.92986 6.06914 6.09361 6.14372 6.20867 6.30628 6.67666 6.74889 6.75337 6.85381 6.98492 7.14680 7.58596 7.89634 7.99573 8.13222 8.66773 9.05250 9.57067 11.08736 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.001458 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.026262 B =19198.630746 C =19382.600514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.089 3.911 4 C -0.179 4.179 5 C -0.083 4.083 6 C -0.086 4.086 7 C -0.076 4.076 8 C 0.063 3.937 9 N -0.679 5.679 10 C 0.027 3.973 11 C 0.117 3.883 12 H 0.094 0.906 13 O -0.534 6.534 14 C 0.021 3.979 15 N -0.520 5.520 16 C 0.035 3.965 17 C 0.162 3.838 18 C -0.508 4.508 19 H 0.082 0.918 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C -0.113 4.113 27 C 0.070 3.930 28 F -0.133 7.133 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.342 0.658 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.368 0.632 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.008 0.992 45 H 0.081 0.919 46 H 0.050 0.950 47 H -0.014 1.014 48 H 0.022 0.978 49 H 0.263 0.737 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 -29.172 14.077 35.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.101 4.101 6 C -0.087 4.087 7 C -0.113 4.113 8 C -0.066 4.066 9 N -0.309 5.309 10 C -0.103 4.103 11 C 0.056 3.944 12 H 0.112 0.888 13 O -0.338 6.338 14 C -0.108 4.108 15 N -0.243 5.243 16 C -0.113 4.113 17 C 0.036 3.964 18 C -0.546 4.546 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.132 4.132 27 C 0.050 3.950 28 F -0.112 7.112 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.160 0.840 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.214 0.786 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.004 0.996 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.374 -28.530 14.737 35.602 hybrid contribution 0.290 -1.650 -2.348 2.885 sum -15.083 -30.181 12.388 35.942 Atomic orbital electron populations 1.23132 0.77783 1.04381 1.01587 1.86136 1.21835 1.25818 1.88725 1.19027 0.90841 0.85721 1.00103 1.21159 1.00371 0.91428 1.06833 1.20977 0.93958 0.97412 0.97761 1.19628 0.93372 0.94734 1.00970 1.20537 1.01075 0.92361 0.97372 1.21948 0.99495 0.89415 0.95728 1.60353 1.30163 1.26421 1.14011 1.22723 1.00730 0.97249 0.89647 1.21864 0.93928 0.85892 0.92693 0.88830 1.86609 1.29932 1.63148 1.54064 1.22790 0.99377 0.92662 0.96006 1.61846 1.14293 1.20933 1.27237 1.22296 0.90135 1.01471 0.97445 1.20196 0.95970 0.95455 0.84826 1.21044 1.40715 0.96761 0.96109 0.90028 1.24900 0.94985 0.94737 0.98727 1.69895 1.45501 1.08875 1.29653 0.86872 0.78911 0.79448 0.84543 1.20157 1.21193 1.19432 1.20945 1.01067 0.89754 1.01428 1.16963 0.85964 0.83006 1.09023 1.91507 1.76388 1.49019 1.94265 0.87888 0.92346 0.92339 0.84399 0.84689 0.90710 0.89409 0.90874 0.95318 0.84024 0.94674 0.90683 0.78569 0.95484 0.91115 0.97329 0.90051 0.93166 0.99611 0.95974 0.92678 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.67 10.36 -19.58 -0.20 -2.87 16 3 C 0.09 0.77 6.69 -39.18 -0.26 0.51 16 4 C -0.18 -1.16 9.04 -39.45 -0.36 -1.52 16 5 C -0.08 -0.53 9.69 -39.60 -0.38 -0.91 16 6 C -0.09 -0.60 5.13 -104.61 -0.54 -1.14 16 7 C -0.08 -0.49 5.60 -27.89 -0.16 -0.65 16 8 C 0.06 0.49 5.67 -3.83 -0.02 0.47 16 9 N -0.68 -6.36 6.37 -113.78 -0.72 -7.09 16 10 C 0.03 0.28 5.35 -3.82 -0.02 0.25 16 11 C 0.12 1.56 3.13 -26.73 -0.08 1.47 16 12 H 0.09 1.30 6.34 -51.93 -0.33 0.97 16 13 O -0.53 -8.06 13.15 -35.23 -0.46 -8.52 16 14 C 0.02 0.34 4.59 -3.83 -0.02 0.33 16 15 N -0.52 -10.84 4.70 -244.37 -1.15 -11.99 16 16 C 0.03 0.67 9.15 60.07 0.55 1.22 16 17 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 18 C -0.51 -14.56 9.01 -34.44 -0.31 -14.87 16 19 H 0.08 2.56 7.37 -52.48 -0.39 2.17 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 22 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 C -0.11 -0.88 9.67 -39.54 -0.38 -1.26 16 27 C 0.07 0.66 7.31 -39.30 -0.29 0.38 16 28 F -0.13 -1.46 17.11 2.25 0.04 -1.42 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 31 H 0.06 0.18 7.66 -51.92 -0.40 -0.22 16 32 H 0.14 0.56 6.30 -52.48 -0.33 0.23 16 33 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.34 3.05 8.73 -39.29 -0.34 2.70 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.37 4.56 9.04 45.56 0.41 4.97 16 42 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.07 1.10 7.93 -51.92 -0.41 0.68 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 1.77 6.76 -51.93 -0.35 1.41 16 46 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 47 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 48 H 0.02 0.54 7.36 -51.93 -0.38 0.15 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 50 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 409.25 15.07 6.17 6.17 Total: -1.00 -33.88 409.25 -9.06 -42.94 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.43 Total: 1.70 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.39 Total: -8.82 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.10 Total: -46.00 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.67 Total: -11.39 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.88 -9.06 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569961148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.755 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds