Wall clock time and date at job start Sat Apr 11 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47337 * 2 1 4 4 C 1.53001 * 109.47244 * 239.99805 * 2 1 3 5 5 N 1.46898 * 109.47150 * 179.97438 * 4 2 1 6 6 C 1.46908 * 110.99799 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.46982 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47367 * 305.00491 * 7 6 5 9 9 O 1.42905 * 109.47112 * 65.00255 * 7 6 5 10 10 C 1.53000 * 109.47053 * 185.00006 * 7 6 5 11 11 N 1.46897 * 109.46943 * 179.97438 * 10 7 6 12 12 C 1.46896 * 111.00442 * 293.95478 * 11 10 7 13 13 C 1.46904 * 110.99751 * 169.99825 * 11 10 7 14 14 C 1.50707 * 109.46938 * 190.00038 * 13 11 10 15 15 H 1.08000 * 120.00256 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99650 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99749 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47362 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47079 * 119.99631 * 18 16 14 21 21 H 1.48494 * 109.47360 * 239.99629 * 18 16 14 22 22 O 1.42897 * 109.46865 * 120.00097 * 2 1 3 23 23 C 1.35947 * 116.99858 * 275.05023 * 22 2 1 24 24 C 1.38715 * 120.02864 * 185.69681 * 23 22 2 25 25 C 1.38151 * 119.96474 * 180.25159 * 24 23 22 26 26 C 1.38454 * 120.03359 * 359.47546 * 25 24 23 27 27 F 1.35096 * 119.97163 * 180.29716 * 26 25 24 28 28 C 1.38457 * 120.05836 * 0.26995 * 26 25 24 29 29 C 1.38147 * 120.03181 * 359.97438 * 28 26 25 30 30 H 1.09005 * 109.47140 * 300.00499 * 1 2 3 31 31 H 1.09007 * 109.46953 * 60.00065 * 1 2 3 32 32 H 1.08997 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47113 * 300.00332 * 4 2 1 34 34 H 1.09007 * 109.47040 * 60.00183 * 4 2 1 35 35 H 1.00899 * 110.99857 * 56.04957 * 5 4 2 36 36 H 1.08999 * 109.46859 * 300.00709 * 6 5 4 37 37 H 1.08998 * 109.46568 * 60.00282 * 6 5 4 38 38 H 0.96704 * 113.99877 * 59.99602 * 9 7 6 39 39 H 1.09000 * 109.47034 * 300.00101 * 10 7 6 40 40 H 1.09002 * 109.46820 * 60.00279 * 10 7 6 41 41 H 1.09005 * 109.47025 * 59.99743 * 12 11 10 42 42 H 1.08996 * 109.47386 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47103 * 300.00280 * 12 11 10 44 44 H 1.09000 * 109.47390 * 310.00332 * 13 11 10 45 45 H 1.09001 * 109.46853 * 70.00329 * 13 11 10 46 46 H 0.96998 * 119.99759 * 180.02562 * 17 16 14 47 47 H 1.07995 * 120.01499 * 0.02627 * 24 23 22 48 48 H 1.08001 * 119.98187 * 179.74340 * 25 24 23 49 49 H 1.07995 * 119.98335 * 179.97438 * 28 26 25 50 50 H 1.07999 * 120.01923 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5090 -0.7207 -1.2495 6 6 4.0355 -1.4071 -2.4370 7 6 5.5649 -1.3866 -2.4016 8 1 5.9124 -0.3581 -2.3042 9 8 6.0259 -2.1527 -1.2868 10 6 6.1130 -1.9898 -3.6964 11 7 7.5815 -1.9696 -3.6628 12 6 8.0896 -0.5914 -3.6768 13 6 8.1443 -2.7495 -4.7732 14 6 9.6288 -2.9125 -4.5709 15 1 10.1063 -2.4803 -3.7039 16 6 10.3773 -3.6133 -5.4927 17 7 9.7957 -4.1400 -6.5481 18 14 12.2174 -3.8147 -5.2423 19 1 12.6237 -3.1330 -3.9872 20 1 12.5494 -5.2593 -5.1513 21 1 12.9420 -3.2116 -6.3896 22 8 2.0063 -0.6737 1.1668 23 6 2.1114 0.0626 2.3048 24 6 2.6770 -0.4946 3.4422 25 6 2.7785 0.2531 4.5995 26 6 2.3259 1.5614 4.6212 27 9 2.4312 2.2933 5.7518 28 6 1.7660 2.1204 3.4850 29 6 1.6587 1.3735 2.3278 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.8709 -1.1341 -0.4032 36 1 3.6862 -2.4396 -2.4445 37 1 3.6856 -0.8986 -3.3353 38 1 5.7532 -3.0803 -1.3073 39 1 5.7655 -3.0183 -3.7937 40 1 5.7614 -1.4054 -4.5468 41 1 7.7126 -0.0563 -2.8051 42 1 9.1791 -0.6055 -3.6517 43 1 7.7539 -0.0896 -4.5843 44 1 7.6718 -3.7313 -4.8039 45 1 7.9607 -2.2284 -5.7128 46 1 10.3222 -4.6333 -7.1963 47 1 3.0345 -1.5135 3.4242 48 1 3.2150 -0.1818 5.4865 49 1 1.4130 3.1409 3.5034 50 1 1.2223 1.8099 1.4415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574192069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:21 Heat of formation + Delta-G solvation = -104.543997 kcal Electronic energy + Delta-G solvation = -28895.007424 eV Core-core repulsion = 24644.051493 eV Total energy + Delta-G solvation = -4250.955932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.11811 -40.68473 -38.46943 -37.84042 -35.99522 -35.02027 -32.66794 -32.48289 -31.45726 -29.72714 -29.57739 -27.25433 -26.56968 -24.91782 -23.95833 -23.14074 -22.82749 -21.48331 -21.01273 -20.14139 -18.85266 -17.70737 -17.10915 -16.59012 -16.33598 -16.03027 -15.92841 -15.71418 -15.29035 -15.18373 -14.84838 -14.71771 -14.40734 -14.10490 -14.09268 -13.71259 -13.54466 -13.42157 -13.29503 -13.05271 -12.73338 -12.57893 -12.36583 -12.27801 -12.09204 -11.89143 -11.50121 -11.34003 -11.14646 -11.10185 -11.01197 -10.86725 -10.72242 -10.64909 -10.27829 -9.99361 -9.60550 -9.57234 -9.10034 -8.63307 -8.43623 -8.43321 -7.18138 -6.02214 -4.02899 0.77024 0.85896 2.74501 3.20715 3.31978 3.39255 3.45167 3.75931 3.96430 4.25665 4.36437 4.41913 4.44143 4.59002 4.63834 4.72434 4.73540 4.89332 4.91448 5.06798 5.10671 5.16186 5.20707 5.30225 5.35637 5.38524 5.40884 5.50204 5.52712 5.62884 5.66132 5.74220 5.75125 5.78266 5.86634 6.07471 6.22643 6.33278 6.33518 6.41885 6.75983 6.80183 7.00785 7.23846 7.28156 7.33848 7.81682 7.97983 8.11419 8.21955 8.56731 9.05674 9.61339 11.08813 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.001770 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.618803 B =15815.263664 C =16966.432854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.084 0.916 4 C 0.064 3.936 5 N -0.685 5.685 6 C 0.028 3.972 7 C 0.114 3.886 8 H 0.103 0.897 9 O -0.545 6.545 10 C 0.025 3.975 11 N -0.529 5.529 12 C 0.037 3.963 13 C 0.192 3.808 14 C -0.504 4.504 15 H 0.065 0.935 16 C 0.053 3.947 17 N -0.900 5.900 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 O -0.305 6.305 23 C 0.131 3.869 24 C -0.124 4.124 25 C -0.112 4.112 26 C 0.054 3.946 27 F -0.143 7.143 28 C -0.113 4.113 29 C -0.182 4.182 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.356 0.644 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.367 0.633 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.028 0.972 45 H -0.011 1.011 46 H 0.260 0.740 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.039 10.201 17.177 30.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.026 3.974 3 H 0.102 0.898 4 C -0.066 4.066 5 N -0.318 5.318 6 C -0.102 4.102 7 C 0.054 3.946 8 H 0.120 0.880 9 O -0.349 6.349 10 C -0.105 4.105 11 N -0.253 5.253 12 C -0.112 4.112 13 C 0.067 3.933 14 C -0.542 4.542 15 H 0.083 0.917 16 C -0.148 4.148 17 N -0.540 5.540 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.212 1.212 22 O -0.219 6.219 23 C 0.086 3.914 24 C -0.142 4.142 25 C -0.131 4.131 26 C 0.035 3.965 27 F -0.122 7.122 28 C -0.132 4.132 29 C -0.201 4.201 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.213 0.787 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.046 0.954 45 H 0.007 0.993 46 H 0.070 0.930 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.154 0.846 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.476 10.893 17.335 30.403 hybrid contribution 0.126 -0.907 -0.770 1.196 sum -22.350 9.986 16.565 29.558 Atomic orbital electron populations 1.22369 0.94663 1.03649 1.03175 1.22595 0.93857 0.97636 0.83322 0.89775 1.22065 0.89378 0.99441 0.95700 1.60410 1.05706 1.59424 1.06268 1.22702 0.96951 0.96706 0.93869 1.21969 0.89622 0.96593 0.86423 0.87951 1.86607 1.78825 1.24693 1.44762 1.22702 0.91721 1.00406 0.95654 1.62011 1.02978 1.12209 1.48132 1.22249 1.01901 0.89339 0.97704 1.19753 0.95311 0.92315 0.85931 1.21219 0.92238 1.33324 1.07465 0.91709 1.25005 0.98886 0.95745 0.95170 1.69969 1.35818 1.36370 1.11889 0.86430 0.85070 0.77801 0.78071 1.19596 1.21027 1.21162 1.86113 1.80924 1.38281 1.16586 1.18985 0.95149 0.90239 0.87063 1.20334 1.02064 1.01517 0.90318 1.20978 1.00413 0.92552 0.99152 1.17585 1.04849 0.90707 0.83340 1.91489 1.94515 1.77004 1.49173 1.20934 0.99819 1.00817 0.91608 1.21176 1.05584 0.94008 0.99335 0.91587 0.90602 0.91254 0.94158 0.89165 0.82461 0.94826 0.90350 0.78666 0.91355 0.95339 0.93356 0.90724 0.97371 0.95426 0.99316 0.93038 0.84035 0.84072 0.84587 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 9.17 37.16 0.34 -0.64 16 2 C 0.08 0.60 2.50 -26.73 -0.07 0.53 16 3 H 0.08 0.61 6.31 -51.93 -0.33 0.28 16 4 C 0.06 0.51 5.42 -3.82 -0.02 0.49 16 5 N -0.69 -7.14 6.50 -113.78 -0.74 -7.88 16 6 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 7 C 0.11 1.62 3.08 -26.73 -0.08 1.54 16 8 H 0.10 1.58 6.55 -51.93 -0.34 1.24 16 9 O -0.55 -8.31 12.72 -35.23 -0.45 -8.76 16 10 C 0.03 0.43 4.62 -3.83 -0.02 0.41 16 11 N -0.53 -11.51 4.62 -244.37 -1.13 -12.64 16 12 C 0.04 0.74 9.14 60.06 0.55 1.29 16 13 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 14 C -0.50 -14.35 8.46 -34.44 -0.29 -14.65 16 15 H 0.06 1.85 7.12 -52.49 -0.37 1.47 16 16 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 O -0.31 -2.77 9.14 -19.57 -0.18 -2.95 16 23 C 0.13 1.16 6.60 -39.23 -0.26 0.91 16 24 C -0.12 -1.04 9.99 -39.44 -0.39 -1.43 16 25 C -0.11 -0.90 10.02 -39.53 -0.40 -1.30 16 26 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 27 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 28 C -0.11 -0.89 10.02 -39.53 -0.40 -1.28 16 29 C -0.18 -1.41 8.24 -39.44 -0.33 -1.74 16 30 H 0.07 0.35 6.91 -51.93 -0.36 -0.01 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.36 4.06 7.68 -39.29 -0.30 3.76 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.37 4.59 9.05 45.56 0.41 5.00 16 39 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 42 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 45 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.14 0.83 5.43 -52.49 -0.28 0.55 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -32.11 408.34 -9.67 -41.78 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.29 Total: 3.93 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.79 Total: -8.95 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -1.13 Total: -46.70 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.63 Total: -11.71 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.11 -9.67 -41.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574192069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.764 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds