Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 S 1.81397 * 109.46931 * 120.00120 * 2 1 3 5 5 C 1.81402 * 103.00092 * 174.99458 * 4 2 1 6 6 C 1.50699 * 109.46958 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00387 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99932 * 179.72824 * 6 5 4 9 9 C 1.46931 * 120.62672 * 0.02562 * 8 6 5 10 10 C 1.53193 * 108.77004 * 233.58712 * 9 8 6 11 11 C 1.53042 * 109.31327 * 305.36224 * 10 9 8 12 12 C 1.53042 * 109.53716 * 61.36849 * 11 10 9 13 13 H 1.09007 * 109.49445 * 58.58171 * 12 11 10 14 14 C 1.52995 * 109.49941 * 178.64874 * 12 11 10 15 15 H 1.08997 * 110.63728 * 60.70135 * 14 12 11 16 16 C 1.55162 * 110.72178 * 297.56163 * 14 12 11 17 17 C 1.54907 * 101.58221 * 206.13123 * 16 14 12 18 18 N 1.47429 * 104.82973 * 37.01094 * 17 16 14 19 19 C 1.36935 * 125.64534 * 155.91047 * 18 17 16 20 20 H 1.07995 * 120.00283 * 353.88748 * 19 18 17 21 21 C 1.38812 * 119.99675 * 173.89329 * 19 18 17 22 22 N 1.31618 * 120.00152 * 6.81731 * 21 19 18 23 23 Si 1.86799 * 119.99849 * 186.82467 * 21 19 18 24 24 H 1.48502 * 109.47313 * 94.98230 * 23 21 19 25 25 H 1.48502 * 109.47019 * 214.98234 * 23 21 19 26 26 H 1.48500 * 109.47198 * 334.98153 * 23 21 19 27 27 C 1.47323 * 108.73763 * 335.71394 * 18 17 16 28 28 C 1.46918 * 120.63182 * 179.72063 * 8 6 5 29 29 H 1.09001 * 109.46967 * 300.00152 * 1 2 3 30 30 H 1.09007 * 109.46964 * 59.99443 * 1 2 3 31 31 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46967 * 239.99848 * 2 1 3 33 33 H 1.08997 * 109.47004 * 299.99977 * 3 2 1 34 34 H 1.09001 * 109.47123 * 59.99944 * 3 2 1 35 35 H 1.08996 * 109.46955 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46592 * 60.00253 * 5 4 2 37 37 H 1.08996 * 109.47211 * 300.00204 * 5 4 2 38 38 H 1.09001 * 109.58493 * 353.37291 * 9 8 6 39 39 H 1.08999 * 109.58595 * 113.66105 * 9 8 6 40 40 H 1.09000 * 109.49841 * 65.31986 * 10 9 8 41 41 H 1.09007 * 109.49437 * 185.41498 * 10 9 8 42 42 H 1.09000 * 109.45859 * 181.38676 * 11 10 9 43 43 H 1.09001 * 109.45972 * 301.36214 * 11 10 9 44 44 H 1.09000 * 111.00012 * 324.21050 * 16 14 12 45 45 H 1.08996 * 111.00351 * 88.01864 * 16 14 12 46 46 H 1.09003 * 110.36587 * 155.84519 * 17 16 14 47 47 H 1.08992 * 110.36919 * 278.16936 * 17 16 14 48 48 H 0.97006 * 119.99444 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.06041 * 241.87781 * 27 18 17 50 50 H 1.08998 * 109.84726 * 120.61296 * 27 18 17 51 51 H 1.09003 * 109.58587 * 246.20081 * 28 8 6 52 52 H 1.08996 * 109.58737 * 6.62502 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 3.9307 -0.8876 1.2290 6 6 4.5892 -1.5788 2.3951 7 8 3.9134 -2.0076 3.3063 8 7 5.9288 -1.7256 2.4225 9 6 6.7602 -1.2167 1.3232 10 6 7.6441 -2.3558 0.8055 11 6 8.4382 -2.9500 1.9711 12 6 7.4711 -3.5229 3.0098 13 1 6.8463 -4.2850 2.5438 14 6 8.2663 -4.1467 4.1585 15 1 8.8883 -3.3967 4.6469 16 6 9.1312 -5.3297 3.6486 17 6 9.2695 -6.1889 4.9301 18 7 7.9644 -6.0714 5.6059 19 6 7.4395 -6.9753 6.4904 20 1 7.9464 -7.9118 6.6701 21 6 6.2557 -6.6880 7.1559 22 7 5.5679 -5.6112 6.8402 23 14 5.6390 -7.8295 8.4998 24 1 6.0907 -7.3270 9.8221 25 1 4.1550 -7.8750 8.4681 26 1 6.1809 -9.1941 8.2774 27 6 7.3201 -4.8182 5.1760 28 6 6.5857 -2.3917 3.5553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 0.0005 36 1 4.3053 0.1331 1.1523 37 1 4.1590 -1.4284 0.3105 38 1 6.1204 -0.8558 0.5179 39 1 7.3863 -0.4014 1.6858 40 1 7.0178 -3.1288 0.3603 41 1 8.3338 -1.9689 0.0553 42 1 9.0863 -3.7446 1.6013 43 1 9.0454 -2.1707 2.4315 44 1 8.6149 -5.8807 2.8625 45 1 10.1048 -4.9817 3.3039 46 1 9.4698 -7.2283 4.6702 47 1 10.0627 -5.7964 5.5662 48 1 4.7408 -5.4103 7.3056 49 1 7.1710 -4.1614 6.0329 50 1 6.3627 -5.0376 4.7033 51 1 7.1997 -1.6717 4.0965 52 1 5.8308 -2.8063 4.2233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725057135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -24.364626 kcal Electronic energy + Delta-G solvation = -28363.118141 eV Core-core repulsion = 24681.852224 eV Total energy + Delta-G solvation = -3681.265917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.18368 -38.16707 -36.58415 -35.05847 -33.57847 -32.15750 -31.51818 -30.18663 -28.45963 -27.51843 -27.16906 -25.05800 -24.51587 -22.68135 -22.21965 -21.00220 -19.96824 -19.25190 -18.95176 -17.31087 -16.73884 -16.65600 -15.85327 -15.74019 -15.12781 -14.96889 -14.54423 -14.44971 -14.20243 -13.93237 -13.80791 -13.63226 -13.43669 -13.21172 -12.88922 -12.62625 -12.48450 -12.39008 -12.26570 -11.84852 -11.67971 -11.61713 -11.52150 -11.46107 -11.16157 -11.09953 -10.79778 -10.77650 -10.70852 -10.51421 -10.17805 -9.92879 -9.86438 -9.76577 -9.69865 -9.67614 -9.39681 -8.53920 -8.48278 -7.76804 -6.71104 -5.60637 -2.93365 1.29969 2.35563 2.64073 3.03874 3.47861 3.52330 3.55662 4.33693 4.43779 4.52870 4.58884 4.63681 4.74033 4.85029 4.89629 4.92544 4.94083 5.10838 5.22426 5.23534 5.30765 5.33208 5.40651 5.48643 5.53657 5.56549 5.60015 5.70280 5.72400 5.77355 5.79156 5.82157 5.88894 6.00942 6.06427 6.12303 6.16151 6.32416 6.42710 6.49779 6.58784 6.69296 6.72317 6.79641 7.04915 7.40780 7.66568 7.72564 7.93073 8.21309 8.37057 9.32670 9.93687 10.60809 11.51049 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002900 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.715098 B = 9653.511343 C =11684.363965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.176 6.176 5 C -0.125 4.125 6 C 0.525 3.475 7 O -0.506 6.506 8 N -0.608 5.608 9 C 0.107 3.893 10 C -0.135 4.135 11 C -0.115 4.115 12 C -0.082 4.082 13 H 0.074 0.926 14 C -0.110 4.110 15 H 0.065 0.935 16 C -0.123 4.123 17 C 0.133 3.867 18 N -0.608 5.608 19 C -0.232 4.232 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.185 3.815 28 C 0.117 3.883 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.043 0.957 50 H 0.045 0.955 51 H 0.065 0.935 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 15.813 -19.689 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.051 5.949 5 C -0.276 4.276 6 C 0.311 3.689 7 O -0.380 6.380 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.173 4.173 11 C -0.152 4.152 12 C -0.101 4.101 13 H 0.092 0.908 14 C -0.129 4.129 15 H 0.084 0.916 16 C -0.162 4.162 17 C 0.007 3.993 18 N -0.334 5.334 19 C -0.361 4.361 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.060 3.940 28 C -0.005 4.005 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.184 15.144 -18.198 23.704 hybrid contribution 0.571 -0.043 -0.456 0.732 sum -0.614 15.101 -18.654 24.008 Atomic orbital electron populations 1.21560 0.91617 1.03144 1.02664 1.23256 1.00182 0.98778 0.99115 1.22102 1.00906 0.94710 1.02943 1.87730 1.01431 1.76386 1.29401 1.23555 0.97482 1.04752 1.01843 1.19621 0.82196 0.80087 0.87035 1.90830 1.62124 1.47705 1.37324 1.48060 1.05251 1.58577 1.22426 1.21749 0.94063 0.96598 0.89257 1.21927 0.98777 0.98162 0.98423 1.21608 0.97811 1.00339 0.95465 1.21518 0.96081 0.96781 0.95738 0.90786 1.22465 0.97738 0.96619 0.96120 0.91635 1.22739 0.98289 0.96955 0.98167 1.21539 0.89447 0.96862 0.91475 1.44559 1.15508 1.22472 1.50905 1.19028 1.04950 0.97130 1.14969 0.90610 1.24825 0.97695 0.97911 0.99884 1.69959 1.16303 1.26873 1.43012 0.86167 0.77934 0.79780 0.82308 1.21702 1.21758 1.20752 1.21245 0.92667 0.86638 0.93413 1.21913 0.97034 0.93939 0.87581 0.91575 0.91244 0.91512 0.89684 0.91893 0.91214 0.92748 0.87583 0.87579 0.90460 0.91225 0.91491 0.90951 0.91397 0.91962 0.91945 0.92497 0.94636 0.96673 0.93658 0.93929 0.93678 0.91659 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.20 37.16 0.34 -0.62 16 2 C -0.08 -0.69 3.38 -26.73 -0.09 -0.78 16 3 C -0.15 -0.98 9.10 37.16 0.34 -0.64 16 4 S -0.18 -2.21 20.29 -107.50 -2.18 -4.39 16 5 C -0.13 -1.35 4.47 36.01 0.16 -1.19 16 6 C 0.53 8.01 7.72 -10.98 -0.08 7.92 16 7 O -0.51 -10.43 15.28 5.56 0.08 -10.34 16 8 N -0.61 -8.16 2.97 -172.48 -0.51 -8.67 16 9 C 0.11 0.95 6.34 -3.71 -0.02 0.93 16 10 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 11 C -0.11 -1.29 4.99 -26.69 -0.13 -1.42 16 12 C -0.08 -1.25 1.73 -90.26 -0.16 -1.40 16 13 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 14 C -0.11 -1.98 2.48 -88.79 -0.22 -2.20 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 16 C -0.12 -2.12 5.49 -24.58 -0.13 -2.26 16 17 C 0.13 2.83 7.23 -2.53 -0.02 2.81 16 18 N -0.61 -16.09 3.40 -169.84 -0.58 -16.67 16 19 C -0.23 -6.74 10.26 -15.06 -0.15 -6.90 16 20 H 0.08 2.13 7.84 -52.49 -0.41 1.71 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 22 N -0.91 -28.11 10.36 55.49 0.58 -27.53 16 23 Si 0.91 23.05 29.56 -169.99 -5.02 18.02 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.18 4.56 4.17 -2.90 -0.01 4.54 16 28 C 0.12 1.87 5.47 -3.47 -0.02 1.85 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.33 6.92 -51.93 -0.36 -0.03 16 36 H 0.11 0.87 6.96 -51.92 -0.36 0.51 16 37 H 0.11 0.92 7.68 -51.93 -0.40 0.52 16 38 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 45 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.04 1.18 7.39 -51.93 -0.38 0.79 16 50 H 0.05 1.26 7.09 -51.93 -0.37 0.89 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.11 2.21 6.41 -51.93 -0.33 1.87 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -34.87 406.80 -11.58 -46.45 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -9.61 Total: -2.00 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.46 Total: -1.00 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.51 Total: -52.87 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.18 Total: -4.39 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.87 -11.58 -46.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725057135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.086 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds