Wall clock time and date at job start Sat Apr 11 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 S 1.81397 * 109.46931 * 120.00120 * 2 1 3 5 5 C 1.81402 * 103.00092 * 174.99458 * 4 2 1 6 6 C 1.50699 * 109.46958 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00387 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99932 * 179.72824 * 6 5 4 9 9 C 1.46931 * 120.62672 * 0.02562 * 8 6 5 10 10 C 1.53193 * 108.77004 * 233.58712 * 9 8 6 11 11 C 1.53042 * 109.31327 * 305.36224 * 10 9 8 12 12 C 1.53042 * 109.53716 * 61.36849 * 11 10 9 13 13 H 1.09007 * 109.49445 * 58.58171 * 12 11 10 14 14 C 1.52995 * 109.49941 * 178.64874 * 12 11 10 15 15 H 1.08997 * 110.63728 * 60.70135 * 14 12 11 16 16 C 1.55162 * 110.72178 * 297.56163 * 14 12 11 17 17 C 1.54907 * 101.58221 * 206.13123 * 16 14 12 18 18 N 1.47429 * 104.82973 * 37.01094 * 17 16 14 19 19 C 1.36935 * 125.64534 * 155.91047 * 18 17 16 20 20 H 1.07995 * 120.00283 * 353.88748 * 19 18 17 21 21 C 1.38812 * 119.99675 * 173.89329 * 19 18 17 22 22 N 1.31618 * 120.00152 * 6.81731 * 21 19 18 23 23 Si 1.86799 * 119.99849 * 186.82467 * 21 19 18 24 24 H 1.48502 * 109.47313 * 94.98230 * 23 21 19 25 25 H 1.48502 * 109.47019 * 214.98234 * 23 21 19 26 26 H 1.48500 * 109.47198 * 334.98153 * 23 21 19 27 27 C 1.47323 * 108.73763 * 335.71394 * 18 17 16 28 28 C 1.46918 * 120.63182 * 179.72063 * 8 6 5 29 29 H 1.09001 * 109.46967 * 300.00152 * 1 2 3 30 30 H 1.09007 * 109.46964 * 59.99443 * 1 2 3 31 31 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46967 * 239.99848 * 2 1 3 33 33 H 1.08997 * 109.47004 * 299.99977 * 3 2 1 34 34 H 1.09001 * 109.47123 * 59.99944 * 3 2 1 35 35 H 1.08996 * 109.46955 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46592 * 60.00253 * 5 4 2 37 37 H 1.08996 * 109.47211 * 300.00204 * 5 4 2 38 38 H 1.09001 * 109.58493 * 353.37291 * 9 8 6 39 39 H 1.08999 * 109.58595 * 113.66105 * 9 8 6 40 40 H 1.09000 * 109.49841 * 65.31986 * 10 9 8 41 41 H 1.09007 * 109.49437 * 185.41498 * 10 9 8 42 42 H 1.09000 * 109.45859 * 181.38676 * 11 10 9 43 43 H 1.09001 * 109.45972 * 301.36214 * 11 10 9 44 44 H 1.09000 * 111.00012 * 324.21050 * 16 14 12 45 45 H 1.08996 * 111.00351 * 88.01864 * 16 14 12 46 46 H 1.09003 * 110.36587 * 155.84519 * 17 16 14 47 47 H 1.08992 * 110.36919 * 278.16936 * 17 16 14 48 48 H 0.97006 * 119.99444 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.06041 * 241.87781 * 27 18 17 50 50 H 1.08998 * 109.84726 * 120.61296 * 27 18 17 51 51 H 1.09003 * 109.58587 * 246.20081 * 28 8 6 52 52 H 1.08996 * 109.58737 * 6.62502 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 3.9307 -0.8876 1.2290 6 6 4.5892 -1.5788 2.3951 7 8 3.9134 -2.0076 3.3063 8 7 5.9288 -1.7256 2.4225 9 6 6.7602 -1.2167 1.3232 10 6 7.6441 -2.3558 0.8055 11 6 8.4382 -2.9500 1.9711 12 6 7.4711 -3.5229 3.0098 13 1 6.8463 -4.2850 2.5438 14 6 8.2663 -4.1467 4.1585 15 1 8.8883 -3.3967 4.6469 16 6 9.1312 -5.3297 3.6486 17 6 9.2695 -6.1889 4.9301 18 7 7.9644 -6.0714 5.6059 19 6 7.4395 -6.9753 6.4904 20 1 7.9464 -7.9118 6.6701 21 6 6.2557 -6.6880 7.1559 22 7 5.5679 -5.6112 6.8402 23 14 5.6390 -7.8295 8.4998 24 1 6.0907 -7.3270 9.8221 25 1 4.1550 -7.8750 8.4681 26 1 6.1809 -9.1941 8.2774 27 6 7.3201 -4.8182 5.1760 28 6 6.5857 -2.3917 3.5553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 0.0005 36 1 4.3053 0.1331 1.1523 37 1 4.1590 -1.4284 0.3105 38 1 6.1204 -0.8558 0.5179 39 1 7.3863 -0.4014 1.6858 40 1 7.0178 -3.1288 0.3603 41 1 8.3338 -1.9689 0.0553 42 1 9.0863 -3.7446 1.6013 43 1 9.0454 -2.1707 2.4315 44 1 8.6149 -5.8807 2.8625 45 1 10.1048 -4.9817 3.3039 46 1 9.4698 -7.2283 4.6702 47 1 10.0627 -5.7964 5.5662 48 1 4.7408 -5.4103 7.3056 49 1 7.1710 -4.1614 6.0329 50 1 6.3627 -5.0376 4.7033 51 1 7.1997 -1.6717 4.0965 52 1 5.8308 -2.8063 4.2233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725057135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:01 Heat of formation + Delta-G solvation = -45.816073 kcal Electronic energy + Delta-G solvation = -28364.048345 eV Core-core repulsion = 24681.852224 eV Total energy + Delta-G solvation = -3682.196122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.33801 -39.65496 -37.98886 -35.65247 -35.17079 -33.80211 -32.68295 -31.42837 -30.14263 -28.78394 -28.06309 -26.52650 -26.03981 -23.94225 -22.89339 -22.17038 -21.72279 -20.76148 -20.01242 -18.88361 -18.30496 -17.63638 -17.09462 -16.83280 -16.61842 -16.12811 -15.82851 -15.55878 -15.44112 -15.17229 -14.89093 -14.69050 -14.30919 -14.24935 -14.18332 -13.95285 -13.73595 -13.53328 -13.40402 -13.33929 -13.11542 -12.90596 -12.73809 -12.46436 -12.29760 -12.21468 -12.16531 -12.07349 -11.98867 -11.88658 -11.79720 -11.65756 -11.51263 -11.34276 -11.00217 -10.91054 -10.71049 -10.61498 -9.65653 -8.89766 -8.72970 -7.86891 -5.22257 0.46621 1.39761 1.42840 1.50402 1.52170 1.59458 1.98789 2.47004 3.30544 3.40131 3.62591 3.75905 3.82715 3.86907 3.94680 3.96161 4.00624 4.11272 4.12595 4.18624 4.30854 4.31807 4.35441 4.42360 4.59839 4.63684 4.72545 4.73738 4.79423 4.81764 4.86209 4.89324 4.92307 4.94036 4.96701 5.05993 5.07526 5.17240 5.22455 5.24822 5.28538 5.37858 5.45283 5.46767 5.50088 5.55373 5.72503 5.78721 6.18256 6.34531 7.07481 7.09733 7.78297 8.42950 9.22511 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.002900 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.715098 B = 9653.511343 C =11684.363965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C -0.146 4.146 4 S -0.277 6.277 5 C -0.098 4.098 6 C 0.512 3.488 7 O -0.578 6.578 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.130 4.130 11 C -0.108 4.108 12 C -0.070 4.070 13 H 0.042 0.958 14 C -0.096 4.096 15 H 0.082 0.918 16 C -0.104 4.104 17 C 0.122 3.878 18 N -0.634 5.634 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.071 4.071 22 N -0.948 5.948 23 Si 0.976 3.024 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.263 1.263 27 C 0.199 3.801 28 C 0.121 3.879 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.242 0.758 49 H -0.004 1.004 50 H -0.005 1.005 51 H 0.077 0.923 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 17.460 -23.511 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.189 4.189 3 C -0.204 4.204 4 S -0.051 6.051 5 C -0.248 4.248 6 C 0.300 3.700 7 O -0.457 6.457 8 N -0.337 5.337 9 C -0.023 4.023 10 C -0.168 4.168 11 C -0.145 4.145 12 C -0.089 4.089 13 H 0.061 0.939 14 C -0.116 4.116 15 H 0.100 0.900 16 C -0.142 4.142 17 C -0.003 4.003 18 N -0.361 5.361 19 C -0.373 4.373 20 H 0.101 0.899 21 C -0.264 4.264 22 N -0.596 5.596 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.187 1.187 27 C 0.074 3.926 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.051 0.949 49 H 0.014 0.986 50 H 0.013 0.987 51 H 0.095 0.905 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.826 16.792 -22.076 27.797 hybrid contribution -0.321 -0.574 0.733 0.984 sum 1.504 16.218 -21.344 26.849 Atomic orbital electron populations 1.21610 0.91382 1.02706 1.03422 1.23311 1.00127 0.99170 0.96279 1.22095 1.01575 0.93328 1.03429 1.88164 1.04696 1.78134 1.34079 1.23433 0.94836 1.06310 1.00235 1.20516 0.82549 0.79457 0.87503 1.90807 1.63849 1.50757 1.40269 1.48185 1.05276 1.57500 1.22730 1.22214 0.94413 0.97211 0.88482 1.21937 0.98995 0.97740 0.98084 1.21590 0.96972 1.01184 0.94776 1.21366 0.96250 0.95584 0.95738 0.93900 1.22335 0.96704 0.97140 0.95383 0.90012 1.22686 1.00355 0.95185 0.95993 1.21839 0.87116 0.98274 0.93061 1.44979 1.17683 1.22449 1.51003 1.19477 1.04893 0.97875 1.15052 0.89892 1.25747 0.98342 0.99810 1.02504 1.70259 1.16292 1.29034 1.44057 0.85085 0.76639 0.78633 0.79195 1.21220 1.22562 1.18715 1.20903 0.92602 0.85995 0.93099 1.21595 0.95644 0.94701 0.88235 0.92600 0.88486 0.92634 0.88023 0.89611 0.92394 0.91721 0.84125 0.84635 0.87143 0.88894 0.92550 0.86886 0.90181 0.90094 0.92048 0.87515 0.94080 0.95575 0.94875 0.98583 0.98691 0.90453 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.20 71.98 0.66 -1.16 16 2 C -0.06 -0.88 3.38 30.59 0.10 -0.77 16 3 C -0.15 -1.51 9.10 71.98 0.66 -0.86 16 4 S -0.28 -7.17 20.29 -56.49 -1.15 -8.31 16 5 C -0.10 -1.96 4.47 71.24 0.32 -1.64 16 6 C 0.51 16.19 7.72 87.66 0.68 16.87 16 7 O -0.58 -26.36 15.28 -3.03 -0.05 -26.41 16 8 N -0.60 -16.01 2.97 -817.98 -2.43 -18.44 16 9 C 0.10 1.33 6.34 86.36 0.55 1.88 16 10 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 11 C -0.11 -2.00 4.99 30.62 0.15 -1.84 16 12 C -0.07 -2.13 1.73 -10.56 -0.02 -2.15 16 13 H 0.04 1.57 8.12 -2.38 -0.02 1.55 16 14 C -0.10 -3.48 2.48 -9.61 -0.02 -3.50 16 15 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 16 C -0.10 -3.36 5.49 31.99 0.18 -3.18 16 17 C 0.12 5.08 7.23 86.85 0.63 5.71 16 18 N -0.63 -34.92 3.40 -691.24 -2.35 -37.27 16 19 C -0.24 -14.66 10.26 84.03 0.86 -13.80 16 20 H 0.08 4.73 7.84 -2.91 -0.02 4.71 16 21 C -0.07 -4.39 5.48 84.86 0.47 -3.93 16 22 N -0.95 -62.92 10.36 21.65 0.22 -62.70 16 23 Si 0.98 49.43 29.56 68.60 2.03 51.46 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.20 10.56 4.17 86.67 0.36 10.92 16 28 C 0.12 4.11 5.47 86.52 0.47 4.58 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.81 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.55 6.92 -2.39 -0.02 0.53 16 36 H 0.14 1.82 6.96 -2.39 -0.02 1.80 16 37 H 0.14 1.91 7.68 -2.39 -0.02 1.89 16 38 H 0.11 0.82 5.93 -2.39 -0.01 0.81 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.08 1.35 7.27 -2.39 -0.02 1.33 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16 45 H 0.11 2.48 8.08 -2.39 -0.02 2.46 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.24 15.89 8.31 -92.70 -0.77 15.12 16 49 H 0.00 -0.25 7.39 -2.39 -0.02 -0.27 16 50 H -0.01 -0.32 7.09 -2.39 -0.02 -0.34 16 51 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 52 H 0.04 2.06 6.41 -2.39 -0.02 2.04 16 Total: -1.00 -89.12 406.80 3.37 -85.74 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.86 Total: 10.33 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.23 Total: 5.60 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -4.55 Total: -118.41 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.15 Total: -8.31 kcal Total: -89.12 3.37 -85.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725057135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.928 kcal (2) G-P(sol) polarization free energy of solvation -89.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds