Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46620 * 2 1 4 4 N 1.46901 * 109.46888 * 181.74569 * 3 2 1 5 5 C 1.47845 * 110.99803 * 248.40657 * 4 3 2 6 6 C 1.54906 * 104.89188 * 213.57840 * 5 4 3 7 7 C 1.55433 * 101.52025 * 37.06801 * 6 5 4 8 8 C 1.47445 * 110.99987 * 127.56438 * 4 3 2 9 9 H 1.08997 * 109.88936 * 242.82225 * 8 4 3 10 10 C 1.52996 * 109.88846 * 3.85044 * 8 4 3 11 11 H 1.08998 * 109.58441 * 180.26612 * 10 8 4 12 12 C 1.53198 * 109.58653 * 59.98855 * 10 8 4 13 13 C 1.53077 * 109.29526 * 185.71957 * 12 10 8 14 14 C 1.53037 * 109.65818 * 61.14910 * 13 12 10 15 15 C 1.53194 * 109.31600 * 298.70232 * 14 13 12 16 16 N 1.46924 * 109.58755 * 300.55445 * 10 8 4 17 17 C 1.34773 * 120.63216 * 353.37588 * 16 10 8 18 18 O 1.21280 * 119.99914 * 3.77673 * 17 16 10 19 19 C 1.50701 * 120.00139 * 183.78421 * 17 16 10 20 20 S 1.81002 * 109.47201 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00023 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99883 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99956 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00181 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00079 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47209 * 90.00285 * 25 23 21 27 27 H 1.48496 * 109.47484 * 210.00467 * 25 23 21 28 28 H 1.48506 * 109.47060 * 330.00286 * 25 23 21 29 29 H 1.08997 * 109.47677 * 59.99986 * 1 2 3 30 30 H 1.09007 * 109.46853 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47526 * 299.99611 * 1 2 3 32 32 H 1.08995 * 109.46862 * 240.00444 * 2 1 3 33 33 H 1.09000 * 109.47253 * 119.99745 * 2 1 3 34 34 H 1.08998 * 109.47347 * 61.74748 * 3 2 1 35 35 H 1.08999 * 109.47062 * 301.74487 * 3 2 1 36 36 H 1.08997 * 110.37517 * 332.46364 * 5 4 3 37 37 H 1.09002 * 110.37422 * 94.70066 * 5 4 3 38 38 H 1.09004 * 110.98933 * 155.22034 * 6 5 4 39 39 H 1.08999 * 110.99458 * 279.03523 * 6 5 4 40 40 H 1.09000 * 110.69034 * 205.96865 * 7 6 5 41 41 H 1.09000 * 110.69556 * 82.75650 * 7 6 5 42 42 H 1.09000 * 109.49564 * 305.52606 * 12 10 8 43 43 H 1.08998 * 109.49596 * 65.62233 * 12 10 8 44 44 H 1.08999 * 109.34473 * 301.12533 * 13 12 10 45 45 H 1.08998 * 109.44142 * 181.23635 * 13 12 10 46 46 H 1.09001 * 109.50021 * 178.74792 * 14 13 12 47 47 H 1.09002 * 109.49566 * 58.65480 * 14 13 12 48 48 H 1.08998 * 109.58378 * 294.84515 * 15 14 13 49 49 H 1.08998 * 109.58532 * 174.42485 * 15 14 13 50 50 H 1.08996 * 109.46570 * 299.99493 * 19 17 16 51 51 H 1.08998 * 109.47248 * 59.99729 * 19 17 16 52 52 H 0.97005 * 120.00423 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5083 1.4428 -0.0422 5 6 4.0748 1.9379 1.2306 6 6 5.3706 2.6840 0.8260 7 6 4.9418 3.3473 -0.5127 8 6 4.0052 2.2932 -1.1395 9 1 4.5548 1.6864 -1.8590 10 6 2.8311 2.9868 -1.8331 11 1 3.2034 3.6101 -2.6460 12 6 2.0787 3.8574 -0.8216 13 6 0.8254 4.4345 -1.4845 14 6 -0.0956 3.2943 -1.9246 15 6 0.6342 2.4202 -2.9493 16 7 1.9092 1.9763 -2.3696 17 6 2.2273 0.6672 -2.3311 18 8 3.2510 0.3076 -1.7892 19 6 1.3111 -0.3497 -2.9615 20 16 2.0087 -2.0059 -2.7461 21 6 0.7716 -2.9664 -3.5533 22 1 -0.0896 -2.4816 -3.9889 23 6 0.9033 -4.3460 -3.6284 24 7 -0.0211 -5.0636 -4.2309 25 14 2.3925 -5.1845 -2.8743 26 1 2.0992 -5.5385 -1.4623 27 1 2.7061 -6.4183 -3.6390 28 1 3.5564 -4.2633 -2.9222 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7023 1.9473 0.9052 35 1 1.6512 1.9653 -0.8739 36 1 3.3784 2.6221 1.7152 37 1 4.3082 1.1035 1.8920 38 1 5.6364 3.4359 1.5692 39 1 6.1916 1.9843 0.6699 40 1 5.8080 3.5215 -1.1510 41 1 4.4053 4.2778 -0.3271 42 1 1.7878 3.2503 0.0356 43 1 2.7247 4.6703 -0.4898 44 1 1.1157 5.0233 -2.3547 45 1 0.2999 5.0721 -0.7736 46 1 -0.9971 3.7084 -2.3761 47 1 -0.3664 2.6905 -1.0585 48 1 0.8254 2.9989 -3.8530 49 1 0.0212 1.5521 -3.1917 50 1 0.3325 -0.3023 -2.4839 51 1 1.2071 -0.1351 -4.0251 52 1 0.0711 -6.0278 -4.2838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731551339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = 98.763014 kcal Electronic energy + Delta-G solvation = -31490.619497 eV Core-core repulsion = 27814.692795 eV Total energy + Delta-G solvation = -3675.926702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64882 -38.12592 -37.30619 -33.90558 -32.98271 -32.41562 -32.35783 -30.55226 -28.97454 -28.02819 -25.62375 -25.36960 -24.90621 -23.32557 -21.92079 -21.28656 -20.49908 -19.55693 -18.85265 -17.67855 -17.05646 -16.56021 -15.86475 -15.74654 -15.10738 -14.94358 -14.63571 -14.36806 -14.20419 -13.87297 -13.65863 -13.37761 -13.23021 -12.85971 -12.78217 -12.74686 -12.61831 -12.31401 -12.09365 -11.89406 -11.60610 -11.33148 -11.27954 -11.22857 -11.09791 -11.00670 -10.98049 -10.90218 -10.65306 -10.60364 -10.55469 -10.29500 -10.14432 -9.88675 -9.77473 -8.96832 -8.69551 -8.45324 -7.94345 -7.61097 -6.84588 -6.26864 -3.97323 2.67923 2.99566 3.15547 3.35392 3.52669 3.59233 4.26810 4.34775 4.41640 4.52862 4.61188 4.72252 4.75581 4.84820 4.85624 4.95173 5.06412 5.12196 5.12552 5.24141 5.31720 5.39875 5.48353 5.52904 5.55507 5.59209 5.62922 5.67823 5.71199 5.76148 5.80908 5.81260 5.85385 5.89158 5.91560 5.98525 6.03698 6.04284 6.10615 6.18030 6.28764 6.38782 6.46046 6.60748 6.64883 6.76514 7.20543 7.44267 7.50059 7.63888 7.96182 8.43978 8.56103 9.19777 10.82433 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.004459 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.644232 B = 6278.227821 C = 7129.899704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.161 4.161 3 C -0.044 4.044 4 N -0.474 5.474 5 C 0.032 3.968 6 C -0.125 4.125 7 C -0.150 4.150 8 C 0.089 3.911 9 H 0.106 0.894 10 C 0.131 3.869 11 H 0.076 0.924 12 C -0.172 4.172 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.102 3.898 16 N -0.611 5.611 17 C 0.518 3.482 18 O -0.448 6.448 19 C -0.132 4.132 20 S -0.130 6.130 21 C -0.522 4.522 22 H 0.087 0.913 23 C 0.097 3.903 24 N -0.881 5.881 25 Si 0.854 3.146 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.234 1.234 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.154 0.846 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.092 0.908 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 21.986 6.753 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C -0.172 4.172 4 N -0.198 5.198 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.189 4.189 8 C -0.019 4.019 9 H 0.124 0.876 10 C 0.028 3.972 11 H 0.094 0.906 12 C -0.210 4.210 13 C -0.154 4.154 14 C -0.181 4.181 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.306 3.694 18 O -0.318 6.318 19 C -0.282 4.282 20 S 0.097 5.903 21 C -0.669 4.669 22 H 0.105 0.895 23 C -0.111 4.111 24 N -0.518 5.518 25 Si 0.679 3.321 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.158 1.158 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.007 20.701 7.374 22.538 hybrid contribution -1.196 0.683 -0.030 1.378 sum 3.810 21.384 7.343 22.928 Atomic orbital electron populations 1.21804 0.97247 1.01779 0.99754 1.22583 0.93830 0.97182 1.06259 1.24932 0.88549 0.98964 1.04737 1.63915 1.07500 1.48269 1.00090 1.23282 0.95054 0.97371 0.93835 1.22664 0.98201 0.99031 0.96380 1.23128 0.99770 0.98542 0.97414 1.22792 0.93502 0.90775 0.94879 0.87620 1.21599 0.90375 0.89317 0.95951 0.90624 1.22925 0.97338 1.00230 1.00510 1.21484 0.95901 0.97486 1.00498 1.22025 0.98556 0.97485 0.99992 1.21798 0.84658 0.99772 0.95904 1.48400 1.19720 1.06118 1.60690 1.19958 0.88017 0.81886 0.79490 1.90961 1.24836 1.77826 1.38149 1.23622 1.02269 0.98778 1.03562 1.84765 1.33730 0.95860 1.75934 1.22344 1.08592 0.94289 1.41699 0.89485 1.24683 0.96246 0.96276 0.93927 1.69936 1.33568 1.06724 1.41545 0.86777 0.84570 0.80709 0.80063 1.19238 1.20049 1.15836 0.93662 0.92161 0.94381 0.85832 0.93396 0.95687 0.83047 0.94869 0.91088 0.91661 0.90804 0.91167 0.91431 0.88124 0.90926 0.91917 0.91740 0.90450 0.90838 0.91278 0.88931 0.88399 0.89015 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.09 37.16 0.34 -1.98 16 2 C -0.16 -2.83 4.96 -26.73 -0.13 -2.96 16 3 C -0.04 -0.66 2.21 -3.82 -0.01 -0.67 16 4 N -0.47 -7.20 3.35 -223.35 -0.75 -7.95 16 5 C 0.03 0.42 6.66 -2.30 -0.02 0.41 16 6 C -0.12 -1.35 7.10 -24.43 -0.17 -1.53 16 7 C -0.15 -1.56 6.28 -24.75 -0.16 -1.72 16 8 C 0.09 1.18 2.35 -66.73 -0.16 1.03 16 9 H 0.11 1.72 6.52 -51.93 -0.34 1.38 16 10 C 0.13 1.49 2.66 -67.60 -0.18 1.32 16 11 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.17 -1.65 4.48 -26.59 -0.12 -1.77 16 13 C -0.12 -0.92 5.88 -26.67 -0.16 -1.08 16 14 C -0.14 -1.22 5.72 -26.61 -0.15 -1.37 16 15 C 0.10 1.04 6.29 -3.71 -0.02 1.01 16 16 N -0.61 -7.85 1.70 -165.22 -0.28 -8.13 16 17 C 0.52 8.73 4.28 -10.99 -0.05 8.69 16 18 O -0.45 -8.70 8.33 5.56 0.05 -8.66 16 19 C -0.13 -2.49 3.69 36.01 0.13 -2.36 16 20 S -0.13 -3.18 17.24 -107.50 -1.85 -5.03 16 21 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 22 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 25 Si 0.85 21.72 27.74 -169.99 -4.71 17.00 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 29 H 0.04 0.65 5.99 -51.93 -0.31 0.34 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 2.45 1.91 -51.68 -0.10 2.35 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.37 5.96 -51.93 -0.31 0.06 16 35 H 0.15 2.00 0.64 -107.41 -0.07 1.94 16 36 H 0.03 0.41 7.26 -51.93 -0.38 0.03 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.61 5.71 -51.93 -0.30 0.32 16 42 H 0.10 1.14 3.85 -51.93 -0.20 0.94 16 43 H 0.07 0.62 6.22 -51.93 -0.32 0.30 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.72 6.96 -51.93 -0.36 0.36 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 1.00 5.95 -51.93 -0.31 0.69 16 50 H 0.10 1.77 5.19 -51.92 -0.27 1.50 16 51 H 0.09 1.66 8.08 -51.92 -0.42 1.24 16 52 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -31.54 364.78 -10.25 -41.79 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.33 Total: 5.81 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.63 Total: -14.69 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.26 Total: -41.73 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.05 Total: -8.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.85 Total: -5.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.54 -10.25 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731551339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.553 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds