Wall clock time and date at job start Sat Apr 11 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47050 * 2 1 4 4 N 1.46908 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.47846 * 110.99567 * 23.92127 * 4 3 2 6 6 C 1.54909 * 104.79218 * 146.36599 * 5 4 3 7 7 C 1.55140 * 101.65131 * 322.92673 * 6 5 4 8 8 C 1.47439 * 111.00000 * 144.76324 * 4 3 2 9 9 H 1.09003 * 109.88583 * 117.17262 * 8 4 3 10 10 C 1.53001 * 109.88865 * 356.15324 * 8 4 3 11 11 H 1.09001 * 109.58189 * 300.01706 * 10 8 4 12 12 C 1.53187 * 109.70690 * 60.37446 * 10 8 4 13 13 C 1.53042 * 109.31160 * 174.49436 * 12 10 8 14 14 C 1.53035 * 109.53738 * 298.63188 * 13 12 10 15 15 C 1.52763 * 109.38307 * 61.24231 * 14 13 12 16 16 N 1.46922 * 109.00585 * 305.58665 * 15 14 13 17 17 C 1.34777 * 120.63023 * 233.57752 * 16 15 14 18 18 O 1.21283 * 120.00118 * 158.68283 * 17 16 15 19 19 C 1.50704 * 120.00269 * 338.69082 * 17 16 15 20 20 S 1.80993 * 109.47261 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00257 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99583 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00551 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99630 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46868 * 90.00190 * 25 23 21 27 27 H 1.48502 * 109.46751 * 209.99933 * 25 23 21 28 28 H 1.48500 * 109.47054 * 329.99924 * 25 23 21 29 29 H 1.08996 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46842 * 300.00270 * 1 2 3 31 31 H 1.09000 * 109.46824 * 59.99964 * 1 2 3 32 32 H 1.08998 * 109.47304 * 239.99638 * 2 1 3 33 33 H 1.09000 * 109.46824 * 120.00036 * 2 1 3 34 34 H 1.09002 * 109.47480 * 60.00415 * 3 2 1 35 35 H 1.09000 * 109.47336 * 299.99722 * 3 2 1 36 36 H 1.09001 * 110.37287 * 265.18779 * 5 4 3 37 37 H 1.08996 * 110.37677 * 27.42322 * 5 4 3 38 38 H 1.08998 * 110.99117 * 81.01843 * 6 5 4 39 39 H 1.09006 * 110.98781 * 204.83866 * 6 5 4 40 40 H 1.08998 * 110.70638 * 277.27134 * 7 6 5 41 41 H 1.09003 * 110.70325 * 154.04057 * 7 6 5 42 42 H 1.09002 * 109.49548 * 294.44404 * 12 10 8 43 43 H 1.09000 * 109.49753 * 54.50654 * 12 10 8 44 44 H 1.08993 * 109.46221 * 58.65647 * 13 12 10 45 45 H 1.09003 * 109.45819 * 178.62943 * 13 12 10 46 46 H 1.09000 * 109.49830 * 181.32104 * 14 13 12 47 47 H 1.09001 * 109.50006 * 301.38617 * 14 13 12 48 48 H 1.09003 * 109.50827 * 185.70195 * 15 14 13 49 49 H 1.09002 * 109.42876 * 65.42305 * 15 14 13 50 50 H 1.08995 * 109.46950 * 59.99353 * 19 17 16 51 51 H 1.08999 * 109.46586 * 299.99237 * 19 17 16 52 52 H 0.96997 * 120.00062 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0391 0.1807 -0.5587 6 6 5.3453 0.5879 -1.2850 7 6 4.9566 1.9674 -1.8788 8 6 4.0378 2.5666 -0.7935 9 1 4.6074 3.2386 -0.1514 10 6 2.8844 3.3279 -1.4501 11 1 2.3290 2.6561 -2.1046 12 6 1.9498 3.8817 -0.3701 13 6 0.8785 4.7551 -1.0271 14 6 1.5454 5.9340 -1.7394 15 6 2.4757 5.4066 -2.8303 16 7 3.4181 4.4500 -2.2343 17 6 4.7471 4.6018 -2.3991 18 8 5.5182 4.0768 -1.6241 19 6 5.2750 5.4242 -3.5464 20 16 7.0842 5.4384 -3.4962 21 6 7.4216 6.4397 -4.9062 22 1 6.6072 6.8325 -5.4969 23 6 8.7339 6.7237 -5.2579 24 7 9.7265 6.2446 -4.5382 25 14 9.0916 7.7847 -6.7532 26 1 9.1542 9.2110 -6.3445 27 1 10.3922 7.3820 -7.3461 28 1 8.0127 7.6043 -7.7575 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.2547 -0.5278 0.2411 37 1 3.3286 -0.2496 -1.2645 38 1 6.1704 0.6849 -0.5795 39 1 5.5904 -0.1222 -2.0750 40 1 4.4156 1.8446 -2.8170 41 1 5.8409 2.5886 -2.0211 42 1 1.4727 3.0552 0.1568 43 1 2.5248 4.4801 0.3367 44 1 0.3202 4.1619 -1.7512 45 1 0.1976 5.1307 -0.2632 46 1 0.7804 6.5684 -2.1872 47 1 2.1236 6.5139 -1.0200 48 1 3.0275 6.2371 -3.2709 49 1 1.8862 4.9079 -3.5997 50 1 4.9015 6.4448 -3.4638 51 1 4.9408 4.9900 -4.4886 52 1 9.5408 5.6933 -3.7620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731551342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:28 Heat of formation + Delta-G solvation = 44.685378 kcal Electronic energy + Delta-G solvation = -29782.157008 eV Core-core repulsion = 26103.885324 eV Total energy + Delta-G solvation = -3678.271684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46286 -38.85003 -37.41334 -34.57287 -33.15836 -32.55479 -32.44142 -30.62665 -29.07915 -27.92209 -25.79891 -25.01118 -24.70721 -23.68360 -22.22724 -21.23548 -20.31114 -19.83049 -19.10661 -18.11368 -16.89260 -16.60139 -16.04997 -15.65135 -15.31523 -15.21900 -14.88264 -14.45434 -14.08029 -13.95189 -13.83225 -13.55407 -13.39449 -13.06961 -12.94374 -12.77746 -12.66787 -12.37460 -12.27982 -12.22216 -11.99971 -11.83954 -11.71618 -11.42830 -11.28875 -11.12404 -11.00600 -10.93044 -10.89609 -10.62607 -10.44999 -10.20694 -9.90392 -9.86283 -9.56752 -9.08324 -9.02028 -8.24668 -8.24041 -8.08277 -6.68375 -6.63554 -4.01407 2.79282 2.82209 3.30852 3.37360 3.41798 3.54772 4.02874 4.22719 4.45053 4.56330 4.64165 4.65286 4.72743 4.84178 4.90140 4.96633 4.98467 5.04052 5.12421 5.15238 5.20522 5.21011 5.26614 5.38840 5.41575 5.43291 5.48147 5.49740 5.60738 5.64291 5.72320 5.73629 5.75931 5.78633 5.81121 5.86174 5.91264 5.94896 5.99113 6.03068 6.03753 6.10935 6.16882 6.32928 6.37561 6.78689 6.89050 7.03101 7.12396 7.54524 7.91096 8.47950 8.49027 9.25430 10.80506 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.003162 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.913926 B = 8851.662770 C =10058.843616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.019 3.981 4 N -0.523 5.523 5 C 0.034 3.966 6 C -0.132 4.132 7 C -0.156 4.156 8 C 0.081 3.919 9 H 0.115 0.885 10 C 0.141 3.859 11 H 0.066 0.934 12 C -0.179 4.179 13 C -0.117 4.117 14 C -0.136 4.136 15 C 0.114 3.886 16 N -0.618 5.618 17 C 0.517 3.483 18 O -0.481 6.481 19 C -0.128 4.128 20 S -0.118 6.118 21 C -0.606 4.606 22 H 0.065 0.935 23 C 0.035 3.965 24 N -0.884 5.884 25 Si 1.086 2.914 26 H -0.284 1.284 27 H -0.280 1.280 28 H -0.287 1.287 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.426 -8.966 7.229 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.108 4.108 4 N -0.248 5.248 5 C -0.094 4.094 6 C -0.171 4.171 7 C -0.193 4.193 8 C -0.026 4.026 9 H 0.133 0.867 10 C 0.037 3.963 11 H 0.083 0.917 12 C -0.216 4.216 13 C -0.154 4.154 14 C -0.174 4.174 15 C -0.010 4.010 16 N -0.356 5.356 17 C 0.307 3.693 18 O -0.355 6.355 19 C -0.279 4.279 20 S 0.109 5.891 21 C -0.754 4.754 22 H 0.083 0.917 23 C -0.175 4.175 24 N -0.519 5.519 25 Si 0.912 3.088 26 H -0.211 1.211 27 H -0.205 1.205 28 H -0.213 1.213 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.107 0.893 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.880 -9.025 8.008 22.407 hybrid contribution -2.713 0.042 -1.108 2.931 sum -21.593 -8.984 6.901 24.384 Atomic orbital electron populations 1.21733 0.95681 1.01633 1.01777 1.22053 0.95879 0.97654 1.02670 1.23413 0.89373 0.96244 1.01733 1.64203 1.06461 1.02779 1.51319 1.23263 0.95855 0.92555 0.97682 1.22744 0.97369 0.97370 0.99568 1.23936 1.03088 0.96042 0.96247 1.22993 0.93155 0.91840 0.94631 0.86741 1.21663 0.95165 0.87210 0.92222 0.91672 1.23281 0.97679 1.02149 0.98538 1.21489 0.97634 0.96705 0.99596 1.21859 0.98858 0.98115 0.98614 1.21557 0.91709 0.92501 0.95188 1.47825 1.05277 1.27993 1.54472 1.20099 0.81254 0.81557 0.86430 1.90469 1.56977 1.44513 1.43561 1.23384 1.03811 1.01859 0.98840 1.84701 0.95333 1.68843 1.40245 1.23707 0.97819 1.39283 1.14576 0.91687 1.26036 0.91006 0.97830 1.02634 1.70772 1.33472 1.30725 1.16903 0.83304 0.75993 0.75503 0.73999 1.21052 1.20505 1.21324 0.92738 0.92633 0.92864 0.91283 0.91371 0.89836 0.91374 0.90777 0.93066 0.90784 0.91516 0.93321 0.84597 0.86541 0.91282 0.92225 0.91808 0.90881 0.91369 0.89532 0.91948 0.89316 0.89331 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.15 -1.19 4.91 -26.73 -0.13 -1.33 16 3 C 0.02 0.18 3.65 -3.82 -0.01 0.17 16 4 N -0.52 -6.44 5.44 -237.39 -1.29 -7.73 16 5 C 0.03 0.39 5.55 -2.30 -0.01 0.38 16 6 C -0.13 -1.78 7.08 -24.59 -0.17 -1.95 16 7 C -0.16 -2.44 4.72 -24.91 -0.12 -2.56 16 8 C 0.08 1.16 2.41 -66.73 -0.16 1.00 16 9 H 0.11 2.01 6.51 -51.93 -0.34 1.68 16 10 C 0.14 1.75 1.74 -67.60 -0.12 1.64 16 11 H 0.07 0.79 6.72 -51.93 -0.35 0.44 16 12 C -0.18 -1.85 4.43 -26.61 -0.12 -1.97 16 13 C -0.12 -1.01 5.89 -26.69 -0.16 -1.17 16 14 C -0.14 -1.28 6.06 -26.84 -0.16 -1.44 16 15 C 0.11 1.27 6.20 -3.93 -0.02 1.25 16 16 N -0.62 -8.60 2.98 -165.48 -0.49 -9.10 16 17 C 0.52 9.21 6.49 -10.98 -0.07 9.14 16 18 O -0.48 -9.62 8.97 5.56 0.05 -9.57 16 19 C -0.13 -2.54 5.11 36.01 0.18 -2.36 16 20 S -0.12 -3.07 19.60 -107.50 -2.11 -5.18 16 21 C -0.61 -17.26 9.50 30.94 0.29 -16.96 16 22 H 0.06 1.79 7.80 -52.48 -0.41 1.38 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 24 N -0.88 -27.29 13.67 55.49 0.76 -26.54 16 25 Si 1.09 24.88 29.92 -169.99 -5.09 19.79 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.59 5.70 -51.93 -0.30 0.30 16 33 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.08 0.78 6.43 -51.93 -0.33 0.44 16 35 H 0.07 0.66 3.61 -51.93 -0.19 0.47 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.55 5.41 -51.93 -0.28 0.27 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 41 H 0.14 2.64 4.93 -57.13 -0.28 2.36 16 42 H 0.12 1.05 3.09 -68.85 -0.21 0.84 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.00 6.06 -51.93 -0.31 0.69 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.67 6.95 -51.92 -0.36 1.31 16 51 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 52 H 0.28 8.74 7.12 -40.82 -0.29 8.44 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -31.58 383.17 -11.68 -43.26 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.78 Total: 5.17 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.51 Total: -15.88 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -1.03 Total: -43.36 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.05 Total: -9.57 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.79 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.58 -11.68 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731551342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.945 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds