Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47050 * 2 1 4 4 N 1.46908 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.47846 * 110.99567 * 23.92127 * 4 3 2 6 6 C 1.54909 * 104.79218 * 146.36599 * 5 4 3 7 7 C 1.55140 * 101.65131 * 322.92673 * 6 5 4 8 8 C 1.47439 * 111.00000 * 144.76324 * 4 3 2 9 9 H 1.09003 * 109.88583 * 117.17262 * 8 4 3 10 10 C 1.53001 * 109.88865 * 356.15324 * 8 4 3 11 11 H 1.09001 * 109.58189 * 300.01706 * 10 8 4 12 12 C 1.53187 * 109.70690 * 60.37446 * 10 8 4 13 13 C 1.53042 * 109.31160 * 174.49436 * 12 10 8 14 14 C 1.53035 * 109.53738 * 298.63188 * 13 12 10 15 15 C 1.52763 * 109.38307 * 61.24231 * 14 13 12 16 16 N 1.46922 * 109.00585 * 305.58665 * 15 14 13 17 17 C 1.34777 * 120.63023 * 233.57752 * 16 15 14 18 18 O 1.21283 * 120.00118 * 158.68283 * 17 16 15 19 19 C 1.50704 * 120.00269 * 338.69082 * 17 16 15 20 20 S 1.80993 * 109.47261 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00257 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99583 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00551 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99630 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46868 * 90.00190 * 25 23 21 27 27 H 1.48502 * 109.46751 * 209.99933 * 25 23 21 28 28 H 1.48500 * 109.47054 * 329.99924 * 25 23 21 29 29 H 1.08996 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46842 * 300.00270 * 1 2 3 31 31 H 1.09000 * 109.46824 * 59.99964 * 1 2 3 32 32 H 1.08998 * 109.47304 * 239.99638 * 2 1 3 33 33 H 1.09000 * 109.46824 * 120.00036 * 2 1 3 34 34 H 1.09002 * 109.47480 * 60.00415 * 3 2 1 35 35 H 1.09000 * 109.47336 * 299.99722 * 3 2 1 36 36 H 1.09001 * 110.37287 * 265.18779 * 5 4 3 37 37 H 1.08996 * 110.37677 * 27.42322 * 5 4 3 38 38 H 1.08998 * 110.99117 * 81.01843 * 6 5 4 39 39 H 1.09006 * 110.98781 * 204.83866 * 6 5 4 40 40 H 1.08998 * 110.70638 * 277.27134 * 7 6 5 41 41 H 1.09003 * 110.70325 * 154.04057 * 7 6 5 42 42 H 1.09002 * 109.49548 * 294.44404 * 12 10 8 43 43 H 1.09000 * 109.49753 * 54.50654 * 12 10 8 44 44 H 1.08993 * 109.46221 * 58.65647 * 13 12 10 45 45 H 1.09003 * 109.45819 * 178.62943 * 13 12 10 46 46 H 1.09000 * 109.49830 * 181.32104 * 14 13 12 47 47 H 1.09001 * 109.50006 * 301.38617 * 14 13 12 48 48 H 1.09003 * 109.50827 * 185.70195 * 15 14 13 49 49 H 1.09002 * 109.42876 * 65.42305 * 15 14 13 50 50 H 1.08995 * 109.46950 * 59.99353 * 19 17 16 51 51 H 1.08999 * 109.46586 * 299.99237 * 19 17 16 52 52 H 0.96997 * 120.00062 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0391 0.1807 -0.5587 6 6 5.3453 0.5879 -1.2850 7 6 4.9566 1.9674 -1.8788 8 6 4.0378 2.5666 -0.7935 9 1 4.6074 3.2386 -0.1514 10 6 2.8844 3.3279 -1.4501 11 1 2.3290 2.6561 -2.1046 12 6 1.9498 3.8817 -0.3701 13 6 0.8785 4.7551 -1.0271 14 6 1.5454 5.9340 -1.7394 15 6 2.4757 5.4066 -2.8303 16 7 3.4181 4.4500 -2.2343 17 6 4.7471 4.6018 -2.3991 18 8 5.5182 4.0768 -1.6241 19 6 5.2750 5.4242 -3.5464 20 16 7.0842 5.4384 -3.4962 21 6 7.4216 6.4397 -4.9062 22 1 6.6072 6.8325 -5.4969 23 6 8.7339 6.7237 -5.2579 24 7 9.7265 6.2446 -4.5382 25 14 9.0916 7.7847 -6.7532 26 1 9.1542 9.2110 -6.3445 27 1 10.3922 7.3820 -7.3461 28 1 8.0127 7.6043 -7.7575 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.2547 -0.5278 0.2411 37 1 3.3286 -0.2496 -1.2645 38 1 6.1704 0.6849 -0.5795 39 1 5.5904 -0.1222 -2.0750 40 1 4.4156 1.8446 -2.8170 41 1 5.8409 2.5886 -2.0211 42 1 1.4727 3.0552 0.1568 43 1 2.5248 4.4801 0.3367 44 1 0.3202 4.1619 -1.7512 45 1 0.1976 5.1307 -0.2632 46 1 0.7804 6.5684 -2.1872 47 1 2.1236 6.5139 -1.0200 48 1 3.0275 6.2371 -3.2709 49 1 1.8862 4.9079 -3.5997 50 1 4.9015 6.4448 -3.4638 51 1 4.9408 4.9900 -4.4886 52 1 9.5408 5.6933 -3.7620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731551342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = 24.565120 kcal Electronic energy + Delta-G solvation = -29783.029488 eV Core-core repulsion = 26103.885324 eV Total energy + Delta-G solvation = -3679.144164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.57628 -40.01457 -38.46514 -35.43517 -34.75805 -34.22376 -33.38800 -31.62012 -30.44089 -28.97866 -27.10650 -26.63998 -25.81768 -24.55712 -23.15611 -22.29020 -21.34083 -20.82805 -20.56753 -19.86867 -17.96331 -17.76164 -17.23266 -16.91651 -16.64321 -16.07620 -16.06882 -15.74209 -15.59963 -15.15000 -15.02785 -14.59525 -14.44763 -14.36921 -14.19853 -14.04456 -13.85631 -13.79716 -13.56087 -13.23971 -13.04889 -12.81436 -12.76996 -12.46873 -12.33811 -12.16047 -11.97315 -11.95509 -11.89392 -11.75807 -11.56510 -11.52995 -11.44530 -11.14100 -11.00519 -10.67823 -10.41173 -10.32398 -9.37775 -9.08338 -8.93350 -8.85749 -6.27616 1.18741 1.42486 1.49993 1.59480 1.77692 2.00082 2.32561 3.01212 3.04388 3.11455 3.40179 3.66398 3.74927 3.80767 3.84547 3.95797 3.99836 4.03586 4.06071 4.13371 4.17774 4.22374 4.26801 4.34251 4.44024 4.46963 4.51663 4.60085 4.65892 4.70356 4.80151 4.81144 4.91223 4.94745 4.98742 5.01088 5.03234 5.07173 5.16251 5.18699 5.21118 5.22837 5.33945 5.42605 5.43670 5.58311 5.62945 5.70692 6.00768 6.14533 6.20177 6.31191 7.05061 7.12796 8.50280 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.003162 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.913926 B = 8851.662770 C =10058.843616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.019 3.981 4 N -0.534 5.534 5 C 0.042 3.958 6 C -0.134 4.134 7 C -0.154 4.154 8 C 0.090 3.910 9 H 0.074 0.926 10 C 0.143 3.857 11 H 0.081 0.919 12 C -0.173 4.173 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.610 5.610 17 C 0.513 3.487 18 O -0.509 6.509 19 C -0.104 4.104 20 S -0.186 6.186 21 C -0.613 4.613 22 H 0.071 0.929 23 C -0.018 4.018 24 N -0.913 5.913 25 Si 1.137 2.863 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.098 0.902 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.339 -9.143 6.385 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.108 4.108 4 N -0.259 5.259 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.192 4.192 8 C -0.018 4.018 9 H 0.092 0.908 10 C 0.040 3.960 11 H 0.099 0.901 12 C -0.210 4.210 13 C -0.149 4.149 14 C -0.170 4.170 15 C -0.018 4.018 16 N -0.346 5.346 17 C 0.302 3.698 18 O -0.386 6.386 19 C -0.256 4.256 20 S 0.041 5.959 21 C -0.761 4.761 22 H 0.089 0.911 23 C -0.222 4.222 24 N -0.549 5.549 25 Si 0.955 3.045 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.188 1.188 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.152 0.848 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.118 0.882 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.119 0.881 51 H 0.116 0.884 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.857 -9.211 7.186 25.669 hybrid contribution -1.580 0.036 -0.770 1.758 sum -24.436 -9.175 6.416 26.879 Atomic orbital electron populations 1.21712 0.94187 1.02288 1.02345 1.21995 0.97097 0.96253 1.02419 1.23488 0.87382 0.97699 1.02185 1.64105 1.08471 1.02311 1.51020 1.23256 0.94805 0.92351 0.98122 1.22743 0.98191 0.96525 0.99700 1.23721 1.01809 0.96747 0.96874 1.22604 0.93477 0.92135 0.93567 0.90842 1.21774 0.94675 0.86720 0.92854 0.90134 1.23264 0.97477 1.02778 0.97484 1.21500 0.97067 0.96102 1.00279 1.21854 0.98829 0.98638 0.97716 1.21867 0.91545 0.91946 0.96431 1.47840 1.04101 1.28614 1.54050 1.19800 0.82720 0.81368 0.85908 1.90536 1.58204 1.45543 1.44282 1.23264 0.98469 1.03333 1.00504 1.84899 1.01908 1.68889 1.40229 1.24039 0.98265 1.38951 1.14812 0.91085 1.27790 0.91048 0.98385 1.04938 1.70891 1.34353 1.32226 1.17388 0.82707 0.76521 0.74430 0.70839 1.19275 1.20394 1.18794 0.92117 0.92051 0.92309 0.91449 0.91689 0.89163 0.90824 0.89737 0.91373 0.92385 0.90477 0.93434 0.88622 0.84769 0.93684 0.90391 0.90069 0.88234 0.93183 0.90210 0.89582 0.88092 0.88415 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.14 -1.90 4.91 30.59 0.15 -1.75 16 3 C 0.02 0.31 3.65 86.30 0.31 0.63 16 4 N -0.53 -12.75 5.44 -904.97 -4.92 -17.67 16 5 C 0.04 0.92 5.55 86.77 0.48 1.40 16 6 C -0.13 -3.69 7.08 31.98 0.23 -3.46 16 7 C -0.15 -5.03 4.72 31.77 0.15 -4.88 16 8 C 0.09 2.63 2.41 45.26 0.11 2.74 16 9 H 0.07 2.77 6.51 -2.39 -0.02 2.76 16 10 C 0.14 3.37 1.74 44.97 0.08 3.45 16 11 H 0.08 1.72 6.72 -2.39 -0.02 1.71 16 12 C -0.17 -3.21 4.43 30.67 0.14 -3.08 16 13 C -0.11 -1.52 5.89 30.62 0.18 -1.34 16 14 C -0.13 -2.10 6.06 30.53 0.19 -1.92 16 15 C 0.10 2.09 6.20 86.22 0.53 2.62 16 16 N -0.61 -16.56 2.98 -795.85 -2.37 -18.93 16 17 C 0.51 18.86 6.49 87.66 0.57 19.43 16 18 O -0.51 -21.81 8.97 -3.04 -0.03 -21.84 16 19 C -0.10 -4.22 5.11 71.24 0.36 -3.86 16 20 S -0.19 -10.18 19.60 -56.49 -1.11 -11.29 16 21 C -0.61 -35.53 9.50 67.95 0.65 -34.88 16 22 H 0.07 3.90 7.80 -2.91 -0.02 3.88 16 23 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 24 N -0.91 -58.17 13.67 21.65 0.30 -57.88 16 25 Si 1.14 49.67 29.92 68.60 2.05 51.73 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.95 5.70 -2.39 -0.01 0.93 16 33 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 34 H 0.09 1.43 6.43 -2.39 -0.02 1.41 16 35 H 0.07 1.18 3.61 -2.39 -0.01 1.17 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.29 5.41 -2.39 -0.01 1.28 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.05 1.51 7.84 -2.39 -0.02 1.49 16 41 H 0.10 4.05 4.93 -84.71 -0.42 3.63 16 42 H 0.14 2.03 3.09 -18.29 -0.06 1.98 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.71 6.06 -2.39 -0.01 1.70 16 49 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.10 3.81 6.95 -2.40 -0.02 3.80 16 51 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 52 H 0.26 17.27 7.12 -92.71 -0.66 16.61 16 Total: -1.00 -73.09 383.17 -0.21 -73.30 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.56 Total: 28.82 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.30 Total: -26.24 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -6.99 Total: -94.48 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.03 Total: -21.84 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.73 kcal Atomic # 16 Polarization: -10.18 SS G_CDS: -1.11 Total: -11.29 kcal Total: -73.09 -0.21 -73.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731551342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.867 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds