Wall clock time and date at job start Sat Apr 11 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46699 * 2 1 4 4 N 1.46901 * 109.47256 * 119.99733 * 2 1 3 5 5 C 1.48562 * 111.00134 * 181.19002 * 4 2 1 6 6 C 1.55017 * 103.27315 * 200.48277 * 5 4 2 7 7 C 1.54216 * 102.86077 * 37.11703 * 6 5 4 8 8 C 1.47984 * 110.99824 * 63.78708 * 4 2 1 9 9 C 1.50722 * 110.88858 * 217.97704 * 7 6 5 10 10 C 1.52811 * 109.27632 * 330.19964 * 9 7 6 11 11 C 1.47069 * 114.30771 * 275.70177 * 10 9 7 12 12 C 1.54231 * 110.50895 * 62.83155 * 11 10 9 13 13 N 1.44565 * 109.89030 * 288.37605 * 12 11 10 14 14 C 1.34782 * 118.71220 * 270.78976 * 13 12 11 15 15 O 1.21279 * 119.99832 * 179.73137 * 14 13 12 16 16 C 1.50694 * 119.99881 * 359.73766 * 14 13 12 17 17 S 1.81002 * 109.47105 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00089 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00499 * 0.27426 * 18 17 16 20 20 C 1.38803 * 119.99882 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99987 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99937 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47058 * 89.99891 * 22 20 18 24 24 H 1.48504 * 109.46824 * 209.99521 * 22 20 18 25 25 H 1.48500 * 109.46937 * 329.99550 * 22 20 18 26 26 C 1.47613 * 122.57352 * 90.51427 * 13 12 11 27 27 H 1.08996 * 109.47228 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.47307 * 60.00469 * 1 2 3 29 29 H 1.09009 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47137 * 239.99880 * 2 1 3 31 31 H 1.09001 * 109.47074 * 185.77805 * 3 2 1 32 32 H 1.08992 * 109.47087 * 305.77280 * 3 2 1 33 33 H 1.08999 * 109.47666 * 65.78180 * 3 2 1 34 34 H 1.08997 * 110.65742 * 318.93449 * 5 4 2 35 35 H 1.09001 * 110.65448 * 81.87108 * 5 4 2 36 36 H 1.09006 * 110.73543 * 278.77393 * 6 5 4 37 37 H 1.09005 * 110.73704 * 155.46514 * 6 5 4 38 38 H 1.08998 * 109.96886 * 26.42493 * 8 4 2 39 39 H 1.09001 * 109.97070 * 265.16774 * 8 4 2 40 40 H 1.09004 * 109.50126 * 90.13649 * 9 7 6 41 41 H 1.08998 * 109.50555 * 210.26117 * 9 7 6 42 42 H 1.09007 * 108.51973 * 36.95244 * 10 9 7 43 43 H 1.08997 * 108.51432 * 154.44948 * 10 9 7 44 44 H 1.09005 * 109.26354 * 183.16848 * 11 10 9 45 45 H 1.09003 * 109.26426 * 302.65802 * 11 10 9 46 46 H 1.09003 * 109.20595 * 168.31295 * 12 11 10 47 47 H 1.08994 * 109.40900 * 48.56653 * 12 11 10 48 48 H 1.08997 * 109.47845 * 59.99544 * 16 14 13 49 49 H 1.08998 * 109.47564 * 299.99220 * 16 14 13 50 50 H 0.97004 * 119.99723 * 180.02562 * 21 20 18 51 51 H 1.09007 * 108.97153 * 78.90433 * 26 13 12 52 52 H 1.09000 * 108.97310 * 197.58397 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.5045 -0.6874 1.2483 6 6 3.8330 -1.8569 2.2112 7 6 2.7596 -2.9057 1.8561 8 6 1.6211 -2.1176 1.1889 9 6 2.2733 -3.6170 3.0928 10 6 3.4004 -3.6645 4.1235 11 6 4.3404 -4.7808 3.9416 12 6 5.0699 -4.6578 2.5883 13 7 4.1549 -4.9506 1.5080 14 6 4.0313 -6.2266 1.0919 15 8 3.2668 -6.4992 0.1907 16 6 4.8429 -7.3145 1.7466 17 16 4.4560 -8.9044 0.9729 18 6 5.5135 -9.9629 1.9034 19 1 6.1364 -9.5529 2.6846 20 6 5.5423 -11.3246 1.6358 21 7 4.7792 -11.8252 0.6873 22 14 6.6640 -12.4467 2.6219 23 1 5.9369 -12.9488 3.8154 24 1 7.0820 -13.5947 1.7776 25 1 7.8648 -11.6886 3.0563 26 6 3.3462 -3.9076 0.8468 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1250 1.4444 -0.1035 32 1 1.5946 1.9853 -0.8337 33 1 1.7636 1.9257 0.9372 34 1 3.9224 -0.8746 0.2592 35 1 3.8729 0.2577 1.6474 36 1 3.7350 -1.5408 3.2498 37 1 4.8324 -2.2468 2.0181 38 1 1.4841 -2.4582 0.1627 39 1 0.6971 -2.2499 1.7518 40 1 1.4211 -3.0802 3.5098 41 1 1.9734 -4.6325 2.8343 42 1 3.9585 -2.7296 4.0697 43 1 2.9581 -3.7426 5.1167 44 1 5.0730 -4.7691 4.7487 45 1 3.7909 -5.7217 3.9684 46 1 5.8995 -5.3644 2.5626 47 1 5.4534 -3.6440 2.4743 48 1 4.6012 -7.3592 2.8085 49 1 5.9044 -7.0995 1.6244 50 1 4.7991 -12.7769 0.5006 51 1 3.9743 -3.3689 0.1372 52 1 2.5293 -4.3833 0.3042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733390127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:33 Heat of formation + Delta-G solvation = -25.515360 kcal Electronic energy + Delta-G solvation = -28926.655226 eV Core-core repulsion = 25245.339409 eV Total energy + Delta-G solvation = -3681.315817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.12707 -39.13127 -37.29255 -34.83529 -33.54550 -32.42285 -31.69412 -29.77644 -29.18620 -27.72844 -26.91311 -25.74997 -25.33866 -23.98921 -22.82814 -21.16855 -20.27303 -19.04279 -18.68626 -17.63180 -16.81397 -16.61551 -16.34511 -15.66294 -15.42082 -14.83230 -14.79906 -14.40788 -14.29260 -14.03956 -13.83436 -13.78167 -13.47682 -13.12715 -12.92954 -12.77640 -12.56792 -12.54497 -12.40673 -12.37807 -12.10529 -11.80810 -11.64528 -11.46080 -11.32718 -11.10312 -11.07459 -11.06200 -11.01858 -10.78019 -10.67484 -10.58623 -10.45272 -10.19367 -9.79269 -9.31065 -9.06099 -8.69569 -8.45608 -8.21012 -6.49302 -6.21162 -3.91532 2.94054 3.07927 3.22244 3.26303 3.30371 3.60735 3.65863 4.19323 4.21035 4.37087 4.45387 4.67252 4.69310 4.74836 4.82977 4.94364 4.98218 5.02581 5.04515 5.09686 5.13857 5.19554 5.33525 5.35312 5.38164 5.42427 5.47952 5.49803 5.53431 5.55021 5.59825 5.62214 5.63310 5.70355 5.79097 5.85837 5.88029 5.94675 5.97433 5.99840 6.01833 6.04420 6.10417 6.12968 6.22452 6.35638 6.62335 6.74702 6.82359 7.57878 7.60372 8.35645 8.58580 9.24107 10.86240 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.714871 B =11526.233599 C =12092.969789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.144 4.144 4 N -0.510 5.510 5 C 0.033 3.967 6 C -0.124 4.124 7 C -0.075 4.075 8 C 0.049 3.951 9 C -0.099 4.099 10 C -0.130 4.130 11 C -0.140 4.140 12 C 0.106 3.894 13 N -0.610 5.610 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.149 4.149 17 S -0.064 6.064 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.126 3.874 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.268 0.732 51 H 0.056 0.944 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 26.621 4.378 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 N -0.235 5.235 5 C -0.094 4.094 6 C -0.161 4.161 7 C -0.076 4.076 8 C -0.079 4.079 9 C -0.137 4.137 10 C -0.167 4.167 11 C -0.179 4.179 12 C -0.018 4.018 13 N -0.345 5.345 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.300 4.300 17 S 0.163 5.837 18 C -0.682 4.682 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C 0.003 3.997 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.622 26.357 3.359 26.969 hybrid contribution 1.947 -0.867 0.965 2.339 sum -2.675 25.490 4.324 25.992 Atomic orbital electron populations 1.21835 0.94175 1.02151 1.02041 1.21827 0.96022 0.95287 0.91165 1.21842 1.00787 0.95247 1.02295 1.64905 1.09029 1.12180 1.37394 1.23272 0.88328 0.99325 0.98515 1.23056 0.98366 0.94444 1.00248 1.21311 0.95203 0.94905 0.96209 1.22976 0.97969 0.87174 0.99830 1.21105 0.97825 1.00896 0.93879 1.20722 0.97193 0.99904 0.98860 1.21192 0.99293 0.99939 0.97438 1.21583 0.92064 1.02176 0.86021 1.47627 1.43138 1.07138 1.36560 1.20421 0.82406 0.82623 0.82779 1.90679 1.37411 1.81718 1.29504 1.23582 1.01960 1.00463 1.03949 1.85397 1.57189 0.92894 1.48212 1.22849 1.28236 0.94590 1.22509 0.90978 1.24994 0.95981 0.97206 0.95426 1.70023 1.37343 1.13559 1.29364 0.86179 0.80232 0.79641 0.79517 1.20275 1.20759 1.19694 1.21883 0.95683 0.88576 0.93524 0.91816 0.92360 0.92572 0.94071 0.92824 0.92288 0.91737 0.93898 0.90117 0.89324 0.90388 0.93302 0.89841 0.91500 0.91388 0.90669 0.92538 0.90894 0.91385 0.90096 0.90291 0.89218 0.89367 0.92211 0.92584 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.16 37.16 0.34 -0.72 16 2 C 0.07 0.52 2.37 -67.71 -0.16 0.36 16 3 C -0.14 -0.96 8.87 37.16 0.33 -0.63 16 4 N -0.51 -4.41 5.11 -222.54 -1.14 -5.55 16 5 C 0.03 0.26 5.40 -1.84 -0.01 0.25 16 6 C -0.12 -0.99 4.23 -25.03 -0.11 -1.09 16 7 C -0.07 -0.72 0.62 -154.22 -0.10 -0.81 16 8 C 0.05 0.46 4.74 -2.86 -0.01 0.44 16 9 C -0.10 -1.01 4.88 -27.97 -0.14 -1.14 16 10 C -0.13 -1.17 4.95 -29.67 -0.15 -1.32 16 11 C -0.14 -1.43 5.59 -28.93 -0.16 -1.59 16 12 C 0.11 1.15 5.06 -4.43 -0.02 1.13 16 13 N -0.61 -8.53 2.29 -173.02 -0.40 -8.92 16 14 C 0.53 10.08 7.64 -10.99 -0.08 9.99 16 15 O -0.52 -11.89 15.15 5.56 0.08 -11.81 16 16 C -0.15 -3.04 4.65 36.00 0.17 -2.87 16 17 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 18 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.13 1.56 4.66 -3.00 -0.01 1.55 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 7.29 -51.92 -0.38 0.06 16 30 H 0.04 0.36 7.98 -51.93 -0.41 -0.06 16 31 H 0.05 0.35 7.23 -51.93 -0.38 -0.03 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.36 8.01 -51.93 -0.42 -0.06 16 35 H 0.08 0.58 7.79 -51.93 -0.40 0.17 16 36 H 0.09 0.68 5.85 -51.93 -0.30 0.37 16 37 H 0.08 0.61 5.21 -51.93 -0.27 0.34 16 38 H 0.05 0.49 6.98 -51.93 -0.36 0.13 16 39 H 0.08 0.79 7.33 -51.93 -0.38 0.41 16 40 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 41 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 42 H 0.08 0.59 4.54 -51.92 -0.24 0.35 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.85 7.29 -51.93 -0.38 0.47 16 46 H 0.08 0.92 6.26 -51.93 -0.33 0.59 16 47 H 0.08 0.70 5.15 -51.93 -0.27 0.43 16 48 H 0.09 1.71 7.10 -51.92 -0.37 1.34 16 49 H 0.09 1.68 7.32 -51.92 -0.38 1.30 16 50 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.06 0.66 7.95 -51.92 -0.41 0.25 16 52 H 0.09 1.32 6.64 -51.93 -0.34 0.97 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -33.01 390.87 -10.85 -43.86 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.88 Total: -1.05 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.80 Total: -39.98 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.01 -10.85 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733390127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.344 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds