Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 S 1.81401 * 109.46977 * 119.99882 * 2 1 3 5 5 C 1.81400 * 102.99708 * 174.99881 * 4 2 1 6 6 C 1.50689 * 109.47181 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00343 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00617 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.62464 * 353.80015 * 8 6 5 10 10 C 1.53197 * 108.77421 * 126.41386 * 9 8 6 11 11 C 1.53043 * 109.30965 * 54.63431 * 10 9 8 12 12 C 1.53033 * 109.54178 * 298.63542 * 11 10 9 13 13 C 1.46920 * 120.63668 * 173.82817 * 8 6 5 14 14 H 1.08994 * 109.59174 * 113.79877 * 13 8 6 15 15 C 1.53003 * 109.58590 * 353.37094 * 13 8 6 16 16 H 1.08996 * 110.64052 * 57.12234 * 15 13 8 17 17 C 1.55155 * 110.71951 * 180.45855 * 15 13 8 18 18 C 1.54912 * 101.58203 * 153.86796 * 17 15 13 19 19 N 1.47425 * 104.82832 * 322.98999 * 18 17 15 20 20 C 1.36937 * 125.64543 * 204.09305 * 19 18 17 21 21 H 1.08000 * 119.99826 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00346 * 0.03916 * 20 19 18 23 23 N 1.31619 * 119.99739 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00151 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46997 * 60.00356 * 24 22 20 26 26 H 1.48501 * 109.46924 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47375 * 300.00223 * 24 22 20 28 28 C 1.47019 * 108.70496 * 24.12646 * 19 18 17 29 29 H 1.09005 * 109.46795 * 300.00376 * 1 2 3 30 30 H 1.08996 * 109.47110 * 59.99695 * 1 2 3 31 31 H 1.08994 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46627 * 240.00074 * 2 1 3 33 33 H 1.09000 * 109.47327 * 59.99692 * 3 2 1 34 34 H 1.08997 * 109.47206 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46918 * 300.00207 * 3 2 1 36 36 H 1.09000 * 109.47283 * 59.99847 * 5 4 2 37 37 H 1.09005 * 109.47029 * 299.99927 * 5 4 2 38 38 H 1.09004 * 109.59024 * 6.63187 * 9 8 6 39 39 H 1.08993 * 109.70946 * 246.27350 * 9 8 6 40 40 H 1.09002 * 109.49944 * 294.69040 * 10 9 8 41 41 H 1.08998 * 109.50010 * 174.58899 * 10 9 8 42 42 H 1.09000 * 109.45907 * 178.61508 * 11 10 9 43 43 H 1.08995 * 109.45781 * 58.66198 * 11 10 9 44 44 H 1.08992 * 109.50163 * 181.31585 * 12 11 10 45 45 H 1.09005 * 109.49682 * 301.41581 * 12 11 10 46 46 H 1.09001 * 111.00250 * 271.94031 * 17 15 13 47 47 H 1.09001 * 111.00807 * 35.79192 * 17 15 13 48 48 H 1.08998 * 110.36631 * 204.15537 * 18 17 15 49 49 H 1.08996 * 110.46219 * 81.87199 * 18 17 15 50 50 H 0.96994 * 119.99819 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.88459 * 239.52097 * 28 19 18 52 52 H 1.09009 * 110.00694 * 118.43303 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9308 -0.8874 1.2290 6 6 4.5894 -1.5784 2.3950 7 8 3.9138 -2.0065 3.3067 8 7 5.9294 -1.7199 2.4253 9 6 6.7497 -1.3288 1.2708 10 6 7.8389 -0.3614 1.7449 11 6 8.6275 -1.0074 2.8863 12 6 7.6886 -1.2907 4.0611 13 6 6.5976 -2.2686 3.6132 14 1 7.0475 -3.2305 3.3677 15 6 5.5768 -2.4487 4.7386 16 1 4.7585 -3.0923 4.4157 17 6 6.2578 -3.0170 6.0116 18 6 5.3198 -2.4918 7.1269 19 7 4.9148 -1.1475 6.6773 20 6 4.4902 -0.1290 7.4882 21 1 4.2142 0.8231 7.0597 22 6 4.4149 -0.3202 8.8610 23 7 4.7520 -1.4803 9.3834 24 14 3.8364 1.0694 9.9673 25 1 2.4575 1.4658 9.5841 26 1 3.8463 0.6138 11.3806 27 1 4.7460 2.2335 9.8166 28 6 5.0414 -1.0817 5.2140 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.3054 0.1333 1.1522 37 1 4.1590 -1.4282 0.3105 38 1 6.1228 -0.8369 0.5269 39 1 7.2120 -2.2129 0.8320 40 1 7.3777 0.5610 2.0979 41 1 8.5127 -0.1385 0.9176 42 1 9.4190 -0.3310 3.2091 43 1 9.0680 -1.9422 2.5398 44 1 8.2553 -1.7293 4.8823 45 1 7.2288 -0.3595 4.3921 46 1 6.2717 -4.1068 5.9938 47 1 7.2651 -2.6169 6.1276 48 1 5.8548 -2.4297 8.0745 49 1 4.4472 -3.1374 7.2263 50 1 4.6998 -1.6138 10.3426 51 1 5.7411 -0.2929 4.9375 52 1 4.0678 -0.8879 4.7638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754538019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = 14.460778 kcal Electronic energy + Delta-G solvation = -29555.445816 eV Core-core repulsion = 25875.863495 eV Total energy + Delta-G solvation = -3679.582321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.71119 -37.45066 -36.76174 -34.95798 -33.26400 -32.76959 -31.05976 -29.76060 -28.85739 -27.44934 -26.91266 -25.12017 -24.21189 -22.95644 -22.11126 -21.03106 -20.15492 -19.68782 -18.40260 -16.99355 -16.59366 -16.35872 -15.82311 -15.54307 -15.09498 -14.90875 -14.54260 -14.48714 -14.37136 -13.98356 -13.83467 -13.64740 -13.30988 -13.20396 -12.92435 -12.80280 -12.49624 -12.17905 -11.72728 -11.68280 -11.61714 -11.56075 -11.49945 -11.36305 -11.19408 -11.03482 -10.78226 -10.73904 -10.64267 -10.40991 -9.98779 -9.90428 -9.82196 -9.74053 -9.50712 -9.33291 -8.68136 -8.42142 -8.29412 -7.64313 -6.53704 -5.45671 -2.84342 1.41298 2.46645 2.72788 3.07636 3.51015 3.54705 3.56514 4.40114 4.53105 4.60979 4.64187 4.66012 4.76285 4.87034 4.90574 4.98167 5.04104 5.11925 5.26858 5.28202 5.32391 5.42331 5.44515 5.50421 5.54487 5.57022 5.67089 5.67728 5.83678 5.86815 5.89373 5.90319 5.91584 5.94188 6.08265 6.14131 6.26186 6.44117 6.49372 6.59070 6.74765 6.91897 7.01762 7.19829 7.46832 7.50945 7.75756 7.83486 8.06205 8.38718 8.58148 9.43448 10.05746 10.73771 11.58191 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.004151 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.346813 B = 6743.772947 C = 8735.918635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.148 4.148 4 S -0.171 6.171 5 C -0.127 4.127 6 C 0.517 3.483 7 O -0.478 6.478 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.136 4.136 11 C -0.118 4.118 12 C -0.140 4.140 13 C 0.164 3.836 14 H 0.068 0.932 15 C -0.100 4.100 16 H 0.108 0.892 17 C -0.149 4.149 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.211 4.211 21 H 0.072 0.928 22 C -0.016 4.016 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.143 3.857 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.102 0.898 49 H 0.007 0.993 50 H 0.249 0.751 51 H 0.012 0.988 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 1.085 -24.438 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.213 4.213 3 C -0.207 4.207 4 S 0.055 5.945 5 C -0.278 4.278 6 C 0.303 3.697 7 O -0.351 6.351 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.156 4.156 12 C -0.178 4.178 13 C 0.062 3.938 14 H 0.086 0.914 15 C -0.119 4.119 16 H 0.126 0.874 17 C -0.188 4.188 18 C 0.032 3.968 19 N -0.329 5.329 20 C -0.340 4.340 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.575 5.575 24 Si 0.741 3.259 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.018 3.982 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.119 0.881 49 H 0.025 0.975 50 H 0.060 0.940 51 H 0.030 0.970 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.559 0.486 -22.867 23.015 hybrid contribution 0.617 1.304 -0.647 1.581 sum 3.176 1.790 -23.514 23.795 Atomic orbital electron populations 1.21558 0.91697 1.03014 1.02713 1.23242 1.00131 0.98868 0.99083 1.22101 1.00901 0.94726 1.02974 1.87788 1.01255 1.76211 1.29267 1.23599 0.97630 1.04759 1.01802 1.19541 0.82303 0.81004 0.86860 1.90813 1.63043 1.46179 1.35078 1.47976 1.05195 1.64515 1.16592 1.21696 0.93360 0.98408 0.87981 1.21926 0.97544 0.98996 0.98913 1.21523 0.97954 1.00515 0.95618 1.22176 0.96506 1.01464 0.97623 1.21279 0.93209 0.95162 0.84196 0.91443 1.22756 0.96694 1.00164 0.92306 0.87420 1.23221 0.99700 0.98502 0.97373 1.21823 0.94288 0.84583 0.96090 1.44514 1.77391 1.10725 1.00295 1.19024 1.35489 0.91529 0.87924 0.90978 1.24732 1.02608 0.97123 0.96572 1.69804 1.55064 1.22050 1.10560 0.86208 0.78524 0.81243 0.79909 1.21371 1.21689 1.21424 1.21779 0.97756 0.93089 0.85620 0.91476 0.91338 0.91626 0.89901 0.91073 0.92774 0.92017 0.87781 0.88051 0.90374 0.91389 0.91365 0.91072 0.91807 0.92147 0.90272 0.89966 0.92950 0.92428 0.88061 0.97470 0.93994 0.97010 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.08 -0.77 3.38 -26.73 -0.09 -0.86 16 3 C -0.15 -1.20 9.10 37.16 0.34 -0.86 16 4 S -0.17 -2.30 20.29 -107.50 -2.18 -4.48 16 5 C -0.13 -1.44 4.48 36.00 0.16 -1.27 16 6 C 0.52 7.78 6.98 -10.99 -0.08 7.70 16 7 O -0.48 -9.38 9.27 5.55 0.05 -9.33 16 8 N -0.61 -7.91 2.95 -165.22 -0.49 -8.39 16 9 C 0.11 0.95 6.35 -3.71 -0.02 0.93 16 10 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16 11 C -0.12 -1.21 5.88 -26.69 -0.16 -1.37 16 12 C -0.14 -1.97 4.77 -26.61 -0.13 -2.09 16 13 C 0.16 2.45 2.79 -67.60 -0.19 2.26 16 14 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.10 -1.97 2.09 -88.79 -0.19 -2.16 16 16 H 0.11 2.33 5.87 -52.35 -0.31 2.03 16 17 C -0.15 -3.07 6.43 -24.58 -0.16 -3.23 16 18 C 0.16 4.18 5.89 -2.53 -0.01 4.16 16 19 N -0.60 -16.90 3.39 -170.07 -0.58 -17.48 16 20 C -0.21 -6.34 10.27 -15.06 -0.15 -6.49 16 21 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.02 -0.47 5.49 -17.43 -0.10 -0.57 16 23 N -0.93 -28.56 10.09 55.49 0.56 -28.00 16 24 Si 0.91 23.36 29.55 -169.99 -5.02 18.34 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C 0.14 3.35 5.46 -3.07 -0.02 3.33 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.41 6.92 -51.93 -0.36 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 1.02 6.94 -51.92 -0.36 0.66 16 37 H 0.10 0.87 7.69 -51.92 -0.40 0.47 16 38 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.16 6.44 -51.93 -0.33 0.83 16 45 H 0.08 1.39 5.65 -51.93 -0.29 1.09 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.13 6.04 -51.93 -0.31 0.81 16 48 H 0.10 2.96 5.87 -51.93 -0.30 2.65 16 49 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.01 0.28 5.33 -51.93 -0.28 0.01 16 52 H 0.04 1.13 5.74 -51.92 -0.30 0.83 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -34.62 390.04 -11.41 -46.03 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -9.02 Total: 0.05 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.61 Total: -2.61 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.50 Total: -53.87 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.05 Total: -9.33 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.18 Total: -4.48 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.62 -11.41 -46.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754538019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.489 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds